Experiment set9IT082 for Pseudomonas syringae pv. syringae B728a ΔmexB

Compare to:

KB with Oxonitine 10 mM

200 most detrimental genes:

  gene name fitness t score description  
Psyr_0430 +1.3 2.5 conserved hypothetical protein compare
Psyr_2202 +1.2 2.6 ABC transporter compare
Psyr_3703 +1.1 2.8 Flavodoxin/nitric oxide synthase compare
Psyr_4754 +1.1 2.7 16S rRNA m(2)G-966 methyltransferase compare
Psyr_3623 +1.1 2.1 Protein of unknown function DUF1127 compare
Psyr_0498 +1.0 2.4 Protein of unknown function DUF1445 compare
Psyr_2867 +1.0 2.7 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_0187 +0.9 1.2 conserved hypothetical protein compare
Psyr_3590 +0.8 2.4 conserved hypothetical protein compare
Psyr_1689 +0.8 3.2 conserved hypothetical protein compare
Psyr_4175 +0.8 3.2 Transport-associated protein compare
Psyr_3284 +0.8 2.3 SOS cell division inhibitor SulA compare
Psyr_2553 +0.8 2.7 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases-related enzyme compare
Psyr_2057 +0.8 1.8 acyl-CoA thioesterase II, putative compare
Psyr_4366 +0.8 1.8 Protein of unknown function DUF163 compare
Psyr_0432 +0.7 1.3 conserved hypothetical protein compare
Psyr_3783 +0.7 2.4 conserved hypothetical protein compare
Psyr_2847 +0.7 1.4 hypothetical protein compare
Psyr_1629 +0.7 2.0 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_1546 +0.7 2.3 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen compare
Psyr_1587 +0.7 2.3 Bile acid:sodium symporter compare
Psyr_3359 +0.7 1.9 Phenazine biosynthesis PhzC/PhzF protein compare
Psyr_2710 +0.7 1.0 transcriptional regulator, GntR family compare
Psyr_1633 +0.7 2.1 MotA/TolQ/ExbB proton channel compare
Psyr_1883 +0.7 2.2 Hypothetical protein compare
Psyr_0959 +0.7 3.0 Short-chain dehydrogenase/reductase SDR compare
Psyr_2092 +0.7 1.5 Protein of unknown function 1935 compare
Psyr_0844 +0.7 1.8 Protein of unknown function DUF446 compare
Psyr_2668 +0.7 3.3 Helix-turn-helix, Fis-type compare
Psyr_3779 +0.7 1.9 GCN5-related N-acetyltransferase compare
Psyr_3929 +0.7 3.2 conserved hypothetical protein compare
Psyr_3138 +0.7 3.0 Major facilitator superfamily compare
Psyr_3665 +0.6 1.8 conserved hypothetical protein compare
Psyr_3000 +0.6 1.2 methyltransferase, putative compare
Psyr_1713 +0.6 1.7 hypothetical protein compare
Psyr_1872 +0.6 2.5 conserved hypothetical protein compare
Psyr_3055 +0.6 2.2 Aminoglycoside phosphotransferase compare
Psyr_2115 +0.6 1.3 Response regulator receiver compare
Psyr_2807 +0.6 1.5 NinB compare
Psyr_1388 +0.6 1.1 Protein of unknown function UPF0066 compare
Psyr_0362 +0.6 3.1 Sigma-70 region 2 compare
Psyr_2177 +0.6 2.6 probable sulfopyruvate decarboxylase compare
Psyr_2468 +0.6 1.8 Enoyl-CoA hydratase/isomerase compare
Psyr_0873 +0.6 2.5 GCN5-related N-acetyltransferase compare
Psyr_1192 +0.6 0.9 type III helper protein HrpA2 compare
Psyr_4634 +0.6 1.2 Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein compare
Psyr_0180 +0.6 2.1 Frataxin-like protein compare
Psyr_2752 +0.6 1.3 conserved hypothetical protein compare
Psyr_3266 +0.6 2.0 Oxidoreductase, N-terminal:Oxidoreductase, C-terminal compare
Psyr_1800 +0.6 1.3 transcriptional regulator, LysR family compare
Psyr_3083 +0.5 2.0 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_3462 +0.5 1.8 conserved hypothetical protein compare
Psyr_1871 +0.5 2.1 Transglutaminase-like protein compare
Psyr_2339 +0.5 2.0 hypothetical protein compare
Psyr_2717 +0.5 2.3 Antibiotic biosynthesis monooxygenase compare
Psyr_1202 +0.5 2.0 negative regulator of hrp expression HrpV compare
Psyr_3299 +0.5 1.1 two component transcriptional regulator, LuxR family compare
Psyr_2573 +0.5 1.6 transcriptional regulator, DeoR family compare
Psyr_4482 +0.5 1.4 outer membrane transport energization protein ExbD compare
Psyr_4660 +0.5 1.7 Formate/nitrite transporter compare
Psyr_2692 +0.5 2.1 Polysaccharide deacetylase compare
Psyr_0666 +0.5 2.1 transport system permease protein compare
Psyr_4086 +0.5 1.9 MscS Mechanosensitive ion channel compare
Psyr_0772 +0.5 1.0 Protein of unknown function DUF1355 compare
Psyr_0050 +0.5 2.7 Lysine exporter protein (LYSE/YGGA) compare
Psyr_2563 +0.5 0.8 HAD-superfamily hydrolase, subfamily IIA compare
Psyr_0247 +0.5 2.2 glycine cleavage system H protein compare
Psyr_0436 +0.5 2.0 Phosphopantetheine-binding protein compare
Psyr_2581 +0.5 2.1 FecR protein compare
Psyr_2493 +0.5 2.0 Major facilitator superfamily compare
Psyr_4597 +0.5 2.5 conserved hypothetical protein compare
Psyr_1954 +0.5 1.0 conserved hypothetical protein compare
Psyr_4496 +0.5 3.1 outer membrane transport energization protein TonB compare
Psyr_2388 +0.5 1.3 Twin-arginine translocation pathway signal compare
Psyr_2640 +0.5 2.4 NUDIX hydrolase compare
Psyr_1430 +0.5 1.9 Protein of unknown function DUF1525 compare
Psyr_2674 +0.5 1.0 conserved hypothetical protein compare
Psyr_4011 +0.5 1.1 Thiolase compare
Psyr_3879 +0.5 1.7 hypothetical protein compare
Psyr_2566 +0.5 2.0 dihydroxyacetone kinase DhaK subunit compare
Psyr_0690 +0.5 1.6 3-hydroxyisobutyrate dehydrogenase compare
Psyr_3772 +0.5 1.3 conserved hypothetical protein compare
Psyr_2904 +0.5 2.3 Binding-protein-dependent transport systems inner membrane component compare
Psyr_3367 +0.5 1.2 Iron permease FTR1 compare
Psyr_3256 +0.5 2.1 multisubunit potassium/proton antiporter, PhaF subunit compare
Psyr_2833 +0.5 0.8 CDS compare
Psyr_1123 +0.5 1.2 conserved hypothetical protein compare
Psyr_0179 +0.5 0.8 Protein of unknown function DUF1289 compare
Psyr_3050 +0.5 2.2 Aldo/keto reductase compare
Psyr_4270 +0.5 2.0 serine hydroxymethyltransferase compare
Psyr_2133 +0.5 1.9 Pseudouridine synthase compare
Psyr_1129 +0.5 2.3 Secretion protein HlyD compare
Psyr_4169 +0.5 1.4 4-carboxymuconolactone decarboxylase compare
Psyr_1765 +0.5 1.2 GCN5-related N-acetyltransferase compare
Psyr_3058 +0.5 1.7 Amidase compare
Psyr_0892 +0.5 2.3 Sigma-70 region 2:Sigma-70 region 4 compare
Psyr_3296 +0.5 1.2 MOSC:MOSC, N-terminal beta barrel compare
Psyr_2250 +0.5 0.7 transcriptional regulator, GntR family compare
Psyr_2676 +0.5 1.8 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_3660 +0.4 1.1 conserved hypothetical protein compare
Psyr_4466 +0.4 1.5 Thioredoxin compare
Psyr_3459 +0.4 0.8 Helix-turn-helix, Fis-type compare
Psyr_1576 +0.4 1.2 Glutamine amidotransferase, class-II compare
Psyr_3005 +0.4 1.0 3-oxoadipate enol-lactonase compare
Psyr_0453 +0.4 1.7 16S rRNA m(3)U-1498 methyltransferase compare
Psyr_1630 +0.4 1.0 ABC transporter compare
Psyr_2954 +0.4 1.7 Phospholipase/Carboxylesterase compare
Psyr_2056 +0.4 1.3 CHAD compare
Psyr_3559 +0.4 1.7 succinylglutamate desuccinylase compare
Psyr_2930 +0.4 1.2 Glyoxalase/bleomycin resistance protein/dioxygenase compare
Psyr_4716 +0.4 1.9 Sarcosine oxidase, gamma subunit, heterotetrameric compare
Psyr_2894 +0.4 0.9 conserved hypothetical protein compare
Psyr_2551 +0.4 1.9 acetylornithine aminotransferase apoenzyme compare
Psyr_2248 +0.4 2.1 Phosphonate-binding periplasmic protein compare
Psyr_2811 +0.4 1.1 hypothetical protein compare
Psyr_1505 +0.4 0.5 Protein of unknown function DUF156 compare
Psyr_2589 +0.4 1.7 IucA/IucC compare
Psyr_3426 +0.4 2.1 adenine phosphoribosyltransferase compare
Psyr_1862 +0.4 1.5 Zinc transporter ZIP compare
Psyr_2373 +0.4 2.3 L-arabinose ABC transporter membrane protein compare
Psyr_4505 +0.4 2.5 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
Psyr_4160 +0.4 1.7 Maf-like protein compare
Psyr_2443 +0.4 1.6 conserved domain protein compare
Psyr_1185 +0.4 1.2 type III chaperone protein ShcM compare
Psyr_0817 +0.4 1.8 N-acetylmuramoyl-L-alanine amidase, family 2 compare
Psyr_2533 +0.4 2.5 FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal compare
Psyr_3635 +0.4 0.9 Competence protein ComEA helix-hairpin-helix region compare
Psyr_4069 +0.4 2.4 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_0825 +0.4 2.0 conserved hypothetical protein compare
Psyr_4850 +0.4 1.8 Fumarylacetoacetate (FAA) hydrolase compare
Psyr_3771 +0.4 2.9 conserved hypothetical protein compare
Psyr_4277 +0.4 1.8 Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region compare
Psyr_5036 +0.4 0.7 Response regulator receiver compare
Psyr_2617 +0.4 1.3 Secretion protein HlyD compare
Psyr_2559 +0.4 1.0 hypothetical protein compare
Psyr_3776 +0.4 1.6 Cytosine deaminase compare
Psyr_4942 +0.4 1.3 HAD-superfamily hydrolase, subfamily IA, variant 3 compare
Psyr_4655 +0.4 1.6 hypothetical protein compare
Psyr_1381 +0.4 1.5 conserved hypothetical protein compare
Psyr_3350 +0.4 1.0 Allergen V5/Tpx-1 related protein compare
Psyr_2543 +0.4 1.5 conserved hypothetical protein compare
Psyr_2298 +0.4 2.5 Glycoside hydrolase, family 15 compare
Psyr_2126 +0.4 0.8 4-carboxymuconolactone decarboxylase compare
Psyr_2108 +0.4 2.3 23S rRNA m(2)G-2445 methyltransferase compare
Psyr_2963 +0.4 2.2 amino acid ABC transporter membrane protein 1, PAAT family compare
Psyr_2210 +0.4 1.2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein compare
Psyr_1048 +0.4 1.4 Secretion protein HlyD compare
Psyr_2985 +0.4 1.9 DNA-N1-methyladenine dioxygenase compare
Psyr_3982 +0.4 2.3 3-hydroxyacyl-CoA-acyl carrier protein transferase compare
Psyr_5082 +0.4 2.4 Band 7 protein compare
Psyr_2921 +0.4 0.7 ADP-ribosylglycohydrolase compare
Psyr_1895 +0.4 1.0 conserved hypothetical protein compare
Psyr_2375 +0.4 1.1 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_2753 +0.4 1.6 Zinc-containing alcohol dehydrogenase superfamily compare
Psyr_0428 +0.4 1.9 Monooxygenase, FAD-binding protein compare
Psyr_0341 +0.4 1.4 hypothetical protein compare
Psyr_4810 +0.4 1.9 sodium/proton antiporter, CPA1 family compare
Psyr_1434 +0.4 0.9 Antibiotic biosynthesis monooxygenase compare
Psyr_4808 +0.4 0.6 conserved hypothetical protein compare
Psyr_1876 +0.4 0.8 conserved hypothetical protein compare
Psyr_2199 +0.4 0.8 Urease accessory protein UreF compare
Psyr_2342 +0.4 1.3 CBS:Transporter-associated region:Integral membrane protein TerC compare
Psyr_2049 +0.4 1.1 K+ transporting ATPase, KdpC subunit compare
Psyr_4806 +0.4 1.7 hypothetical protein compare
Psyr_2173 +0.4 2.1 Electron transfer flavoprotein, alpha subunit compare
Psyr_1810 +0.4 1.0 Transthyretin compare
Psyr_2309 +0.4 1.4 conserved hypothetical protein compare
Psyr_0859 +0.4 2.4 Carbonate dehydratase compare
Psyr_2583 +0.4 1.7 diaminobutyrate aminotransferase apoenzyme compare
Psyr_0633 +0.4 1.0 conserved hypothetical protein compare
Psyr_1264 +0.4 1.4 hypothetical protein compare
Psyr_2022 +0.4 1.1 Glycerol-3-phosphate dehydrogenase (NAD(P)+) compare
Psyr_2293 +0.4 1.5 conserved hypothetical protein compare
Psyr_3357 +0.4 1.1 transcriptional regulator, LysR family compare
Psyr_2781 +0.4 0.9 hypothetical protein compare
Psyr_2484 +0.4 1.2 Acriflavin resistance protein compare
Psyr_1078 +0.4 1.4 Protein of unknown function DUF24 compare
Psyr_4842 +0.4 2.0 Phosphoenolpyruvate-protein phosphotransferase compare
Psyr_2740 +0.4 1.4 transcriptional regulator, AraC family with amidase-like domain protein compare
Psyr_2858 +0.4 2.0 2OG-Fe(II) oxygenase superfamily compare
Psyr_0316 +0.4 0.8 conserved hypothetical protein compare
Psyr_0371 +0.4 2.3 conserved hypothetical protein compare
Psyr_2406 +0.4 1.0 Flavin reductase-like protein compare
Psyr_2180 +0.4 1.3 transcriptional regulator, LysR family compare
Psyr_2998 +0.4 1.8 conserved hypothetical protein compare
Psyr_4213 +0.4 1.3 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_0270 +0.3 1.6 DNA polymerase I compare
Psyr_3085 +0.3 1.7 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_3529 +0.3 1.6 Asp/Glu racemase compare
Psyr_3516 +0.3 1.9 Protein of unknown function DUF1338 compare
Psyr_1154 +0.3 2.0 Copper/Zinc superoxide dismutase compare
Psyr_2429 +0.3 1.5 conserved hypothetical protein compare
Psyr_0036 +0.3 1.5 protein of unknown function DUF883 compare
Psyr_2734 +0.3 1.3 benzaldehyde dehydrogenase (NAD+) compare
Psyr_5083 +0.3 1.7 Band 7 protein compare
Psyr_3024 +0.3 1.7 Peptidase M14, carboxypeptidase A compare
Psyr_4916 +0.3 0.9 conserved hypothetical protein compare
Psyr_3887 +0.3 1.2 Electron transport complex, RnfABCDGE type, B subunit compare
Psyr_4804 +0.3 0.6 conserved hypothetical protein compare
Psyr_3919 +0.3 1.9 D-alanine--D-alanine ligase compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a ΔmexB in stress experiments

For stress Oxonitine across organisms