Experiment set9IT077 for Pseudomonas simiae WCS417

Compare to:

Growth on radish seeds for 24 hours

200 most important genes:

  gene name fitness t score description  
PS417_24710 -5.3 -6.3 lipoprotein compare
PS417_18600 -4.1 -3.0 isopropylmalate isomerase compare
PS417_18595 -4.1 -3.9 3-isopropylmalate dehydratase compare
PS417_23545 -3.1 -2.9 gamma-glutamyl kinase compare
PS417_18585 -3.1 -4.2 3-isopropylmalate dehydrogenase compare
PS417_14065 -3.1 -8.0 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_05100 -3.0 -2.8 RNA polymerase sigma factor compare
PS417_27795 -3.0 -1.3 orotate phosphoribosyltransferase compare
PS417_06865 -2.9 -1.9 transporter compare
PS417_00185 -2.8 -2.7 tryptophan synthase subunit beta compare
PS417_16490 -2.8 -2.4 cell division protein FtsK compare
PS417_02415 -2.7 -3.6 phosphoserine phosphatase compare
PS417_16005 -2.7 -3.0 ATPase compare
PS417_24745 -2.6 -3.1 gamma-glutamyl phosphate reductase compare
PS417_15325 -2.5 -1.5 type VI secretion protein compare
PS417_05975 -2.5 -1.1 chemotaxis protein CheW compare
PS417_14590 -2.5 -2.1 LysR family transcriptional regulator compare
PS417_23995 -2.4 -1.0 preprotein translocase subunit SecG compare
PS417_22520 -2.3 -2.2 histidine kinase compare
PS417_23810 -2.3 -9.2 acetolactate synthase 3 catalytic subunit compare
PS417_19425 -2.3 -1.0 allantoicase compare
PS417_08155 -2.3 -1.5 integration host factor subunit beta compare
PS417_18590 -2.3 -4.1 SAM-dependent methyltransferase compare
PS417_02000 -2.3 -7.6 glutamate synthase compare
PS417_25710 -2.2 -1.3 indole-3-glycerol-phosphate synthase compare
PS417_21630 -2.2 -1.5 magnesium transporter compare
PS417_09420 -2.2 -2.0 LysR family transcriptional regulator compare
PS417_08545 -2.2 -2.0 aromatic ring-opening dioxygenase LigB compare
PS417_01640 -2.2 -4.4 histidine kinase compare
PS417_06375 -2.2 -0.9 deoxycytidine triphosphate deaminase compare
PS417_02280 -2.2 -2.5 GlcNAc-PI de-N-acetylase compare
PS417_28040 -2.2 -4.0 histidine kinase compare
PS417_16555 -2.1 -1.4 cupin compare
PS417_11810 -2.1 -2.7 oxidoreductase compare
PS417_26740 -2.1 -6.7 homoserine acetyltransferase compare
PS417_13855 -2.1 -1.2 acetyl-CoA acetyltransferase compare
PS417_13510 -2.1 -1.2 polyketide cyclase compare
PS417_22565 -2.1 -1.3 formyltetrahydrofolate deformylase compare
PS417_23775 -2.0 -1.3 exodeoxyribonuclease V subunit beta compare
PS417_08125 -2.0 -1.2 prephenate dehydratase compare
PS417_01575 -1.9 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_23915 -1.9 -3.8 pantoate--beta-alanine ligase compare
PS417_02005 -1.9 -7.0 glutamate synthase compare
PS417_23805 -1.9 -3.4 acetolactate synthase 3 regulatory subunit compare
PS417_01635 -1.9 -6.5 nitrogen regulation protein NR(I) compare
PS417_27245 -1.9 -2.2 aminotransferase DegT compare
PS417_04420 -1.9 -6.8 histidinol dehydrogenase compare
PS417_06200 -1.8 -5.1 protein-PII uridylyltransferase compare
PS417_00195 -1.8 -1.7 hypothetical protein compare
PS417_01580 -1.8 -1.5 imidazole glycerol phosphate synthase compare
PS417_26730 -1.8 -1.1 pyrroline-5-carboxylate reductase compare
PS417_19415 -1.8 -2.8 allantoinase compare
PS417_05595 -1.8 -8.1 ornithine carbamoyltransferase compare
PS417_08410 -1.8 -2.4 hypothetical protein compare
PS417_26745 -1.8 -4.8 methionine biosynthesis protein MetW compare
PS417_21655 -1.8 -1.0 aspartate kinase compare
PS417_01560 -1.8 -2.0 imidazoleglycerol-phosphate dehydratase compare
PS417_01855 -1.8 -2.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_22535 -1.7 -4.9 ornithine acetyltransferase compare
PS417_11175 -1.7 -2.1 AraC family transcriptional regulator compare
PS417_27040 -1.7 -2.2 3-phosphoglycerate dehydrogenase compare
PS417_27870 -1.7 -2.3 ATP-dependent DNA helicase RecG compare
PS417_19190 -1.7 -2.6 BolA family transcriptional regulator compare
PS417_02560 -1.7 -1.9 23S rRNA methyltransferase compare
PS417_23800 -1.7 -7.5 ketol-acid reductoisomerase compare
PS417_20985 -1.7 -1.1 porin compare
PS417_18560 -1.7 -5.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_21125 -1.7 -5.3 phosphoadenosine phosphosulfate reductase compare
PS417_01850 -1.7 -4.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_14425 -1.7 -2.7 alkylhydroperoxidase compare
PS417_24615 -1.7 -0.9 hypothetical protein compare
PS417_04385 -1.6 -3.5 organic solvent ABC transporter substrate-binding protein compare
PS417_03260 -1.6 -1.7 5S ribosomal RNA compare
PS417_09605 -1.6 -2.3 glycosyl transferase compare
PS417_04965 -1.6 -2.5 hypothetical protein compare
PS417_23370 -1.6 -2.8 protoheme IX farnesyltransferase compare
PS417_24500 -1.6 -1.9 DEAD/DEAH box helicase compare
PS417_11070 -1.6 -2.7 rhizopine-binding protein compare
PS417_28035 -1.6 -4.4 transcriptional regulator PhoB compare
PS417_25725 -1.5 -8.1 anthranilate synthase component I compare
PS417_08135 -1.5 -4.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_19275 -1.5 -1.2 hypothetical protein compare
PS417_27195 -1.5 -0.8 N-acetylglutamate synthase compare
PS417_01095 -1.5 -1.4 amino acid ABC transporter ATP-binding protein compare
PS417_02510 -1.5 -4.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_04410 -1.5 -1.7 hypothetical protein compare
PS417_22450 -1.5 -1.0 ATP-dependent DNA helicase RuvA compare
PS417_18540 -1.5 -3.1 colicin V production CvpA compare
PS417_27475 -1.5 -1.8 membrane protein compare
PS417_00705 -1.5 -1.3 MarR family transcriptional regulator compare
PS417_05535 -1.5 -1.3 Fis family transcriptional regulator compare
PS417_24885 -1.4 -2.7 transcriptional regulator compare
PS417_17215 -1.4 -2.2 peptidylprolyl isomerase compare
PS417_26145 -1.4 -1.6 hypothetical protein compare
PS417_24835 -1.4 -2.6 hypothetical protein compare
PS417_25645 -1.4 -3.7 peptidase M23 compare
PS417_23110 -1.4 -5.0 2-isopropylmalate synthase compare
PS417_25720 -1.4 -5.0 anthranilate synthase component II compare
PS417_00660 -1.4 -1.8 DSBA oxidoreductase compare
PS417_21680 -1.4 -3.9 succinylglutamate desuccinylase compare
PS417_26985 -1.4 -3.3 phosphoenolpyruvate-protein phosphotransferase compare
PS417_13640 -1.4 -2.0 ribose ABC transporter permease compare
PS417_11950 -1.4 -1.2 hypothetical protein compare
PS417_15365 -1.3 -2.3 diaminopimelate epimerase compare
PS417_26890 -1.3 -3.9 dihydroxy-acid dehydratase compare
PS417_19420 -1.3 -3.9 OHCU decarboxylase compare
PS417_27425 -1.3 -6.0 exopolyphosphatase compare
PS417_05445 -1.3 -1.2 DNA mismatch repair protein MutT compare
PS417_18530 -1.3 -3.9 O-succinylhomoserine sulfhydrylase compare
PS417_21035 -1.3 -6.0 multidrug transporter compare
PS417_01570 -1.3 -1.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_27815 -1.3 -1.2 hypothetical protein compare
PS417_09010 -1.3 -1.6 phosphohistidine phosphatase compare
PS417_12110 -1.3 -1.8 ATP-binding protein compare
PS417_26345 -1.3 -3.8 choline dehydrogenase compare
PS417_01590 -1.3 -1.6 polysaccharide deacetylase compare
PS417_18435 -1.3 -2.4 hypothetical protein compare
PS417_21990 -1.3 -1.5 LacI family transcriptional regulator compare
PS417_10675 -1.3 -0.9 TetR family transcriptional regulator compare
PS417_01630 -1.3 -1.3 hypothetical protein compare
PS417_07620 -1.3 -1.4 beta-hexosaminidase compare
PS417_15865 -1.3 -2.6 hypothetical protein compare
PS417_24675 -1.3 -1.1 lipoyl synthase compare
PS417_17610 -1.3 -1.3 AsnC family transcriptional regulator compare
PS417_01995 -1.3 -1.5 hypothetical protein compare
PS417_08025 -1.2 -1.5 acetylornithine aminotransferase compare
PS417_10390 -1.2 -1.7 RNA polymerase subunit sigma24 compare
PS417_01605 -1.2 -1.1 phosphoglycerate mutase compare
PS417_17125 -1.2 -2.3 transcriptional regulator compare
PS417_09140 -1.2 -2.1 biopolymer transporter ExbB compare
PS417_15105 -1.2 -3.9 membrane protein compare
PS417_13755 -1.2 -1.9 oxidoreductase compare
PS417_15095 -1.2 -2.5 hypothetical protein compare
PS417_02255 -1.2 -1.7 lipopolysaccharide kinase compare
PS417_17450 -1.2 -2.6 amino acid ABC transporter substrate-binding protein compare
PS417_00065 -1.2 -1.0 3-methyladenine DNA glycosylase compare
PS417_01795 -1.2 -6.1 glucosyltransferase MdoH compare
PS417_00355 -1.2 -1.8 metal ABC transporter permease compare
PS417_16185 -1.2 -2.7 hypothetical protein compare
PS417_04390 -1.2 -3.9 toluene tolerance protein compare
PS417_10400 -1.2 -2.3 membrane protein compare
PS417_17240 -1.2 -1.8 trigger factor compare
PS417_03525 -1.2 -1.2 hypothetical protein compare
PS417_13305 -1.2 -0.8 hypothetical protein compare
PS417_22060 -1.2 -1.1 hypothetical protein compare
PS417_00650 -1.1 -0.7 LysR family transcriptional regulator compare
PS417_17425 -1.1 -2.8 hypothetical protein compare
PS417_03815 -1.1 -1.7 DNA transporter compare
PS417_25815 -1.1 -2.6 magnesium transporter ApaG compare
PS417_05815 -1.1 -2.2 recombinase RecA compare
PS417_14155 -1.1 -3.4 branched-chain amino acid ABC transporter permease compare
PS417_27490 -1.1 -1.8 hypothetical protein compare
PS417_23360 -1.1 -0.8 hypothetical protein compare
PS417_08045 -1.1 -1.6 uracil permease compare
PS417_22840 -1.1 -1.4 tRNA-Met compare
PS417_23770 -1.1 -0.8 exodeoxyribonuclease V subunit alpha compare
PS417_03155 -1.1 -1.8 transcriptional regulator compare
PS417_06330 -1.1 -2.1 S-(hydroxymethyl)glutathione dehydrogenase compare
PS417_23375 -1.1 -1.3 cytochrome C oxidase compare
PS417_27800 -1.1 -3.1 exodeoxyribonuclease III compare
PS417_21855 -1.1 -1.3 hypothetical protein compare
PS417_04015 -1.1 -2.6 choline ABC transporter permease compare
PS417_08535 -1.1 -2.9 enoyl-CoA hydratase compare
PS417_23715 -1.1 -1.7 cupin compare
PS417_07565 -1.1 -1.6 hypothetical protein compare
PS417_04650 -1.1 -0.5 D-alanine--D-alanine ligase compare
PS417_10445 -1.1 -1.4 LysR family transcriptional regulator compare
PS417_23390 -1.1 -3.4 ubiquinol oxidase subunit II compare
PS417_16990 -1.1 -2.5 acyl-CoA dehydrogenase compare
PS417_23330 -1.1 -1.7 hypothetical protein compare
PS417_13140 -1.1 -0.9 oxidoreductase compare
PS417_02555 -1.1 -6.4 exoribonuclease R compare
PS417_28080 -1.0 -5.9 phosphate ABC transporter permease compare
PS417_26335 -1.0 -1.5 BetI family transcriptional regulator compare
PS417_25985 -1.0 -1.2 dethiobiotin synthetase compare
PS417_26755 -1.0 -1.8 nucleoside-triphosphate diphosphatase compare
PS417_13145 -1.0 -1.5 50S ribosomal protein L21 compare
PS417_04025 -1.0 -3.2 glycine/betaine ABC transporter permease compare
PS417_03080 -1.0 -1.7 hypothetical protein compare
PS417_21705 -1.0 -2.5 arginine N-succinyltransferase compare
PS417_19675 -1.0 -3.3 chemotaxis protein CheY compare
PS417_01045 -1.0 -1.6 RND transporter compare
PS417_12400 -1.0 -1.6 oxidoreductase compare
PS417_26260 -1.0 -1.0 hypothetical protein compare
PS417_04290 -1.0 -2.3 hypothetical protein compare
PS417_00160 -1.0 -2.5 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_07710 -1.0 -3.6 membrane protein compare
PS417_00550 -1.0 -0.6 hypothetical protein compare
PS417_11830 -1.0 -1.3 membrane protein compare
PS417_06075 -1.0 -1.2 hypothetical protein compare
PS417_27865 -1.0 -1.6 LysR family transcriptional regulator compare
PS417_24230 -1.0 -4.0 ATP-dependent protease compare
PS417_09995 -1.0 -1.8 regulatory protein compare
PS417_15465 -1.0 -1.7 carboxynorspermidine decarboxylase compare
PS417_17440 -1.0 -1.3 beta-lactamase compare
PS417_15780 -1.0 -1.3 membrane protein compare
PS417_04275 -1.0 -5.4 hypothetical protein compare
PS417_16495 -1.0 -1.9 leucyl/phenylalanyl-tRNA--protein transferase compare
PS417_19240 -1.0 -2.2 peptidase M42 compare
PS417_04220 -1.0 -0.8 4-carboxymuconolactone decarboxylase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in seeds experiments