Experiment set9IT075 for Escherichia coli BW25113

LB Anaerobic with Cefoxitin sodium salt 0.000003125 mM

Group: stress
Media: LB + Cefoxitin sodium salt (3.13E-03 mM)
Culturing: Keio_ML9a, 96 deep-well microplate; Multitron, Anaerobic, at 37 (C), shaken=0 rpm
By: Hans_Hualan on 7/20/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 13 genes in this experiment

For stress Cefoxitin sodium salt in Escherichia coli BW25113

For stress Cefoxitin sodium salt across organisms

SEED Subsystems

Subsystem	#Specific
D-Tagatose and Galactitol Utilization	3
CBSS-562.2.peg.5158 SK3 including	1
DNA repair, bacterial	1
Peptidyl-prolyl cis-trans isomerase	1
Potassium homeostasis	1
Predicted carbohydrate hydrolases	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Galactose metabolism
• Ascorbate and aldarate metabolism
• Nucleotide sugars metabolism
• Glycolysis / Gluconeogenesis
• Fructose and mannose metabolism
• Ubiquinone and menaquinone biosynthesis
• Starch and sucrose metabolism
• Aminosugars metabolism
• Glycosaminoglycan degradation

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
galactitol degradation	5	5	3
D-galactosamine and N-acetyl-D-galactosamine degradation	4	4	2
N-acetyl-D-galactosamine degradation	5	4	2
lactose degradation I	5	2	2
D-tagatose degradation	3	1	1
peptidoglycan recycling II	10	7	2
superpathway of hexitol degradation (bacteria)	18	18	3
peptidoglycan recycling I	14	14	2
peptidoglycan maturation (meso-diaminopimelate containing)	12	6	1