Experiment set9IT072 for Pseudomonas syringae pv. syringae B728a ΔmexB

Compare to:

KB with Anabasine Hydrochloride 10 mM

200 most important genes:

  gene name fitness t score description  
Psyr_3008 -3.5 -7.5 Undecaprenyl-diphosphatase compare
Psyr_1613 -3.3 -3.2 septum site-determining protein MinC compare
Psyr_0918 -3.2 -13.6 ABC transporter compare
Psyr_1544 -2.9 -4.8 SirA-like protein compare
Psyr_4684 -2.9 -5.1 biotin synthesis protein BioC compare
Psyr_3883 -2.7 -4.2 dCTP deaminase compare
Psyr_0281 -2.7 -3.9 ABC transporter compare
Psyr_0849 -2.6 -8.2 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_4687 -2.5 -9.3 biotin synthase compare
Psyr_0487 -2.5 -2.9 glutathione synthase compare
Psyr_4341 -2.4 -6.0 thiamine-phosphate diphosphorylase compare
Psyr_4686 -2.3 -7.2 8-amino-7-oxononanoate synthase compare
Psyr_0014 -2.3 -5.9 lipid A biosynthesis acyltransferase compare
Psyr_2347 -2.2 -2.6 hypothetical protein compare
Psyr_4340 -2.2 -10.9 phosphomethylpyrimidine kinase, putative compare
Psyr_0303 -2.1 -2.4 Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein compare
Psyr_0917 -2.1 -8.7 ABC-2 compare
Psyr_2980 -2.1 -3.0 UDP-glucose pyrophosphorylase compare
Psyr_4091 -2.0 -4.9 8-oxo-dGTPase compare
Psyr_4580 -2.0 -3.7 anthranilate phosphoribosyltransferase compare
Psyr_4740 -1.9 -7.9 thiazole-phosphate synthase compare
Psyr_0475 -1.9 -3.9 Protein of unknown function YGGT compare
Psyr_1378 -1.9 -3.2 RecA protein compare
Psyr_4627 -1.9 -2.8 dimethyladenosine transferase compare
Psyr_2227 -1.9 -1.9 conserved hypothetical protein compare
Psyr_0454 -1.9 -5.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_0951 -1.9 -2.8 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_2115 -1.9 -2.0 Response regulator receiver compare
Psyr_1036 -1.8 -3.2 conserved hypothetical protein compare
Psyr_2285 -1.7 -3.8 Twin-arginine translocation pathway signal compare
Psyr_1909 -1.7 -2.8 conserved hypothetical protein compare
Psyr_0574 -1.7 -3.7 protease FtsH subunit HflK compare
Psyr_4991 -1.7 -2.1 hypothetical protein compare
Psyr_1663 -1.7 -3.0 phosphoribosylanthranilate isomerase compare
Psyr_2855 -1.6 -5.0 methionine synthase (B12-independent) compare
Psyr_4683 -1.6 -4.7 dethiobiotin synthase compare
Psyr_3446 -1.6 -2.7 Surface presentation of antigens (SPOA) protein compare
Psyr_0034 -1.5 -1.5 tryptophan synthase, beta chain compare
Psyr_2555 -1.5 -2.4 (dCTP deaminase), deoxycytidine triphosphate deaminase compare
Psyr_1612 -1.5 -2.9 septum site-determining protein MinD compare
Psyr_0565 -1.5 -5.4 Protein of unknown function UPF0126 compare
Psyr_3179 -1.5 -2.6 DNA translocase FtsK compare
Psyr_2346 -1.5 -4.7 conserved hypothetical protein compare
Psyr_1268 -1.5 -3.9 extracellular solute-binding protein, family 3:SLT compare
Psyr_0575 -1.5 -2.8 protease FtsH subunit HflC compare
Psyr_3808 -1.4 -2.2 hypothetical protein compare
Psyr_2642 -1.4 -3.4 hypothetical protein compare
Psyr_3807 -1.4 -5.4 hypothetical protein compare
Psyr_0033 -1.3 -1.2 tryptophan synthase, alpha chain compare
Psyr_0382 -1.2 -2.2 Sec-independent periplasmic protein translocase compare
Psyr_1250 -1.2 -2.5 conserved hypothetical protein compare
Psyr_4884 -1.2 -4.7 Rhodanese-like protein compare
Psyr_2444 -1.2 -2.1 Response regulator receiver compare
Psyr_5132 -1.2 -1.7 Glucose-inhibited division protein A subfamily compare
Psyr_2071 -1.2 -2.1 outer membrane lipoprotein OprI compare
Psyr_0378 -1.2 -5.3 Glycosyl transferase, family 2 compare
Psyr_5133 -1.2 -3.3 tRNA modification GTPase trmE compare
Psyr_2854 -1.2 -4.6 conserved hypothetical protein compare
Psyr_4791 -1.1 -1.6 D-erythrose-4-phosphate dehydrogenase compare
Psyr_0919 -1.1 -7.2 Chromosome segregation ATPase-like protein compare
Psyr_1371 -1.1 -5.2 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_0316 -1.1 -2.7 conserved hypothetical protein compare
Psyr_1554 -1.1 -2.9 hypothetical protein compare
Psyr_3581 -1.1 -2.8 ribosomal large subunit pseudouridine synthase B compare
Psyr_1556 -1.1 -2.3 hypothetical protein compare
Psyr_2664 -1.1 -4.5 hypothetical protein compare
Psyr_4089 -1.1 -3.5 PAS compare
Psyr_4115 -1.1 -1.5 phosphoheptose isomerase compare
Psyr_0212 -1.1 -2.6 Conserved hypothetical protein 255 compare
Psyr_0215 -1.1 -5.5 Exodeoxyribonuclease III xth compare
Psyr_1410 -1.1 -2.9 Holliday junction DNA helicase RuvB compare
Psyr_1547 -1.0 -1.7 glycine cleavage system transcriptional repressor compare
Psyr_2852 -1.0 -1.6 conserved hypothetical protein compare
Psyr_0788 -1.0 -2.5 Response regulator receiver compare
Psyr_4512 -1.0 -4.2 putative phage-related protein compare
Psyr_4118 -1.0 -3.9 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_1929 -1.0 -4.4 hypothetical protein compare
Psyr_3547 -1.0 -3.2 transcriptional regulator, TetR family compare
Psyr_2719 -1.0 -1.5 transcriptional regulator, TetR family compare
Psyr_2396 -1.0 -1.6 Tartrate dehydrogenase compare
Psyr_2023 -1.0 -2.1 conserved hypothetical protein compare
Psyr_1930 -1.0 -1.2 hypothetical protein compare
Psyr_4804 -1.0 -1.5 conserved hypothetical protein compare
Psyr_2797 -1.0 -3.6 hypothetical protein compare
Psyr_0517 -1.0 -1.1 Dihydrolipoamide acetyltransferase compare
Psyr_1747 -1.0 -3.0 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_0920 -1.0 -7.5 Glycosyl transferase, group 1 compare
Psyr_2345 -0.9 -3.1 ea59 protein compare
Psyr_1419 -0.9 -1.9 preQ(0) biosynthesis protein QueC compare
Psyr_1751 -0.9 -4.1 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_0377 -0.9 -3.9 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_1748 -0.9 -4.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_2182 -0.9 -2.4 hypothetical protein compare
Psyr_2898 -0.9 -3.1 Helix-turn-helix motif protein compare
Psyr_1404 -0.9 -5.5 Ferritin and Dps compare
Psyr_RNA61 -0.9 -2.4 tRNA-Gly compare
Psyr_2321 -0.9 -3.9 YD repeat protein compare
Psyr_3450 -0.9 -2.8 Hpt compare
Psyr_1389 -0.9 -2.6 Protein of unknown function DUF1456 compare
Psyr_RNA11 -0.9 -1.7 tRNA-Lys compare
Psyr_3861 -0.9 -1.9 Protein of unknown function DUF1145 compare
Psyr_2242 -0.9 -2.0 conserved hypothetical protein compare
Psyr_4996 -0.9 -3.5 hypothetical protein compare
Psyr_4112 -0.9 -4.5 Protein of unknown function UPF0011 compare
Psyr_0736 -0.9 -2.0 umuC protein compare
Psyr_2474 -0.9 -2.2 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region compare
Psyr_4306 -0.9 -3.0 conserved hypothetical protein compare
Psyr_1667 -0.8 -2.8 Colicin V production protein compare
Psyr_3342 -0.8 -1.2 conserved hypothetical protein compare
Psyr_2769 -0.8 -2.3 conserved hypothetical protein compare
Psyr_0826 -0.8 -4.5 glucose-6-phosphate isomerase compare
Psyr_2977 -0.8 -1.8 cointegrate resolution protein T compare
Psyr_1223 -0.8 -1.1 CDS compare
Psyr_2604 -0.8 -2.4 conserved hypothetical protein; putative membrane protein compare
Psyr_4519 -0.8 -3.3 General substrate transporter:Major facilitator superfamily compare
Psyr_2578 -0.8 -1.8 regulatory protein, LuxR compare
Psyr_2380 -0.8 -2.1 hypothetical protein compare
Psyr_2897 -0.8 -2.4 regulatory protein, LuxR:Response regulator receiver compare
Psyr_0385 -0.8 -2.0 phosphoribosyl-ATP pyrophosphatase compare
Psyr_3146 -0.8 -2.7 general secretion pathway protein J, putative compare
Psyr_0187 -0.8 -1.3 conserved hypothetical protein compare
Psyr_3954 -0.8 -3.4 GTP-binding protein LepA compare
Psyr_3258 -0.8 -2.5 conserved hypothetical protein compare
Psyr_1462 -0.8 -2.4 GCN5-related N-acetyltransferase compare
Psyr_0214 -0.8 -1.6 conserved hypothetical protein compare
Psyr_2462 -0.8 -3.6 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_0282 -0.8 -3.5 Binding-protein-dependent transport systems inner membrane component compare
Psyr_3193 -0.8 -2.3 Transcription factor jumonji, jmjC compare
Psyr_2826 -0.8 -2.9 hypothetical protein compare
Psyr_1540 -0.8 -1.9 hypothetical protein compare
Psyr_0169 -0.8 -2.1 Hsp33 protein compare
Psyr_1954 -0.8 -0.9 conserved hypothetical protein compare
Psyr_5135 -0.8 -1.8 Protein of unknown function DUF37 compare
Psyr_3054 -0.8 -3.2 Choline/ethanolamine kinase:Aminoglycoside phosphotransferase compare
Psyr_3137 -0.8 -4.2 ATPase compare
Psyr_2853 -0.8 -2.4 CDS compare
Psyr_0319 -0.7 -1.9 conserved hypothetical protein compare
Psyr_2747 -0.7 -1.6 amino acid/amide ABC transporter substrate-binding protein, HAAT family compare
Psyr_1408 -0.7 -1.6 Holliday junction endonuclease RuvC compare
Psyr_1616 -0.7 -1.1 Rieske [2Fe-2S] region compare
Psyr_2768 -0.7 -2.3 tail fiber assembly domain protein compare
Psyr_2770 -0.7 -3.5 tail fiber domain protein compare
Psyr_0941 -0.7 -3.8 Conserved hypothetical protein 92 compare
Psyr_1698 -0.7 -2.4 Glutathionylspermidine synthase compare
Psyr_3958 -0.7 -4.3 RNA polymerase, sigma-24 subunit, RpoE compare
Psyr_2249 -0.7 -2.0 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4821 -0.7 -2.8 PAS/PAC sensor signal transduction histidine kinase compare
Psyr_1919 -0.7 -3.5 hypothetical protein compare
Psyr_3089 -0.7 -5.8 Hemolysin-type calcium-binding region:hemolysin-type calcium binding related protein compare
Psyr_2482 -0.7 -1.1 Secretion protein HlyD compare
Psyr_RNA78 -0.7 -1.9 5S ribosomal RNA compare
Psyr_1594 -0.7 -2.1 FKBP-type peptidyl-prolyl isomerase, N-terminal:Peptidylprolyl isomerase, FKBP-type compare
Psyr_5130 -0.7 -3.9 chromosome segregation ATPase compare
Psyr_1864 -0.7 -2.5 spermidine synthase compare
Psyr_2256 -0.7 -1.6 ABC transporter compare
Psyr_0369 -0.7 -2.1 lipoprotein, putative compare
Psyr_3213 -0.7 -1.6 Propeptide, PepSY amd peptidase M4 compare
Psyr_3743 -0.7 -2.0 ABC transporter compare
Psyr_4310 -0.7 -3.7 hypothetical protein compare
Psyr_1097 -0.7 -1.5 glycine cleavage system H protein compare
Psyr_4203 -0.7 -1.5 SsrA-binding protein compare
Psyr_2348 -0.7 -1.3 hypothetical protein compare
Psyr_4161 -0.7 -1.4 Rod shape-determining protein MreD compare
Psyr_2018 -0.7 -2.6 Dienelactone hydrolase compare
Psyr_0490 -0.7 -3.0 CheW-like protein compare
Psyr_1968 -0.7 -1.2 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_1733 -0.7 -1.4 Peptidyl-prolyl cis-trans isomerase, cyclophilin type compare
Psyr_4093 -0.7 -2.5 glutamate N-acetyltransferase compare
Psyr_4408 -0.6 -3.5 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_3601 -0.6 -2.2 conserved hypothetical protein compare
Psyr_2607 -0.6 -2.4 regulatory protein, LuxR compare
Psyr_2848 -0.6 -2.7 hypothetical protein compare
Psyr_0236 -0.6 -1.3 Endoribonuclease L-PSP compare
Psyr_1947 -0.6 -2.7 MbtH-like protein compare
Psyr_0202 -0.6 -2.8 transcriptional regulator, LysR family compare
Psyr_1439 -0.6 -3.1 Beta-lactamase compare
Psyr_2601 -0.6 -3.9 regulatory protein, LuxR compare
Psyr_0928 -0.6 -4.2 hypothetical protein compare
Psyr_4951 -0.6 -2.2 hypothetical protein compare
Psyr_2629 -0.6 -3.0 von Willebrand factor, type A compare
Psyr_4797 -0.6 -1.0 Protein of unknown function DUF1090 compare
Psyr_0858 -0.6 -1.3 conserved hypothetical protein compare
Psyr_3334 -0.6 -1.5 Protein of unknown function DUF336 compare
Psyr_2275 -0.6 -2.1 glutamate synthase (NADPH) GltB3 subunit compare
Psyr_1555 -0.6 -1.8 Cobyrinic acid a,c-diamide synthase compare
Psyr_1588 -0.6 -1.6 Putative exonuclease, RdgC compare
Psyr_0185 -0.6 -2.3 tyrosine recombinase XerC subunit compare
Psyr_4745 -0.6 -0.9 hypothetical protein compare
Psyr_3637 -0.6 -4.6 Glycosyl transferase, family 4 compare
Psyr_3127 -0.6 -2.0 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_2695 -0.6 -1.4 conserved hypothetical protein compare
Psyr_4100 -0.6 -3.2 D-alanine--D-alanine ligase compare
Psyr_0936 -0.6 -4.1 Glycosyl transferase, group 1 compare
Psyr_1935 -0.6 -2.4 Protein of unknown function DUF796 compare
Psyr_4388 -0.6 -1.6 Response regulator receiver compare
Psyr_4727 -0.6 -1.5 glutathione S-transferase, putative compare
Psyr_2643 -0.6 -3.0 hypothetical protein compare
Psyr_1167 -0.6 -1.3 nucleoside ABC transporter membrane protein compare
Psyr_0830 -0.6 -2.6 Poly(A) polymerase compare
Psyr_1056 -0.6 -2.0 Poly(beta-D-mannuronate) lyase compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a ΔmexB in stress experiments

For stress Anabasine Hydrochloride across organisms