Experiment set9IT069 for Escherichia coli BW25113

LB Anaerobic with Furaltadone hydrochloride 0.000015625 mM

Group: stress
Media: LB + Furaltadone hydrochloride (1.56E-02 mM)
Culturing: Keio_ML9a, 96 deep-well microplate; Multitron, Anaerobic, at 37 (C), shaken=0 rpm
By: Hans_Hualan on 7/20/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 20 genes in this experiment

For stress Furaltadone hydrochloride in Escherichia coli BW25113

For stress Furaltadone hydrochloride across organisms

SEED Subsystems

Subsystem	#Specific
DNA repair, UvrABC system	3
DNA repair, bacterial RecFOR pathway	3
Iron acquisition in Vibrio	2
Transport of Iron	2
Campylobacter Iron Metabolism	1
Cobalt-zinc-cadmium resistance	1
D-allose utilization	1
DNA-replication	1
Fermentations: Mixed acid	1
Glycerolipid and Glycerophospholipid Metabolism in Bacteria	1
Glycine Biosynthesis	1
Glycine and Serine Utilization	1
Pterin biosynthesis	1
Trehalose Uptake and Utilization	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Glycolysis / Gluconeogenesis
• Glycine, serine and threonine metabolism
• Nucleotide sugars metabolism
• Fructose and mannose metabolism
• Galactose metabolism
• Ascorbate and aldarate metabolism
• Fatty acid metabolism
• Puromycin biosynthesis
• Tyrosine metabolism
• Starch and sucrose metabolism
• Aminosugars metabolism
• alpha-Linolenic acid metabolism
• 1- and 2-Methylnaphthalene degradation
• Trinitrotoluene degradation
• 3-Chloroacrylic acid degradation
• Folate biosynthesis
• Retinol metabolism
• Porphyrin and chlorophyll metabolism
• Carotenoid biosynthesis - General
• Alkaloid biosynthesis I
• Metabolism of xenobiotics by cytochrome P450
• Insect hormone biosynthesis
• Drug metabolism - cytochrome P450

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
acetaldehyde biosynthesis I	1	1	1
tetrahydropteridine recycling	2	2	1
L-threonine degradation II	2	2	1
ethanol degradation I	2	2	1
pyruvate fermentation to ethanol II	2	1	1
pyruvate fermentation to ethanol I	3	3	1
ethanol degradation II	3	3	1
pyruvate fermentation to ethanol III	3	3	1
L-aspartate degradation III (anaerobic)	3	3	1
L-aspartate degradation II (aerobic)	3	3	1
L-leucine degradation III	3	2	1
L-valine degradation II	3	2	1
L-isoleucine degradation II	3	2	1
acrylate degradation II	3	2	1
L-methionine degradation III	3	1	1
L-phenylalanine degradation V	3	1	1
phytol degradation	4	3	1
L-phenylalanine degradation III	4	2	1
salidroside biosynthesis	4	2	1
L-tyrosine degradation III	4	2	1
cytidine-5'-diphosphate-glycerol biosynthesis	4	1	1
ethanolamine utilization	5	5	1
CMP-3-deoxy-D-manno-octulosonate biosynthesis	5	5	1
pyruvate fermentation to isobutanol (engineered)	5	4	1
acetylene degradation (anaerobic)	5	4	1
(S)-propane-1,2-diol degradation	5	3	1
phenylethanol biosynthesis	5	2	1
noradrenaline and adrenaline degradation	13	4	2
3-methylbutanol biosynthesis (engineered)	7	6	1
CMP-8-amino-3,8-dideoxy-D-manno-octulosonate biosynthesis	7	4	1
serotonin degradation	7	3	1
butanol and isobutanol biosynthesis (engineered)	8	2	1
superpathway of fermentation (Chlamydomonas reinhardtii)	9	8	1
3-hydroxypropanoate cycle	13	7	1
superpathway of Clostridium acetobutylicum solventogenic fermentation	13	7	1
glyoxylate assimilation	13	5	1
L-tryptophan degradation V (side chain pathway)	13	1	1
mixed acid fermentation	16	16	1
superpathway of (Kdo)2-lipid A biosynthesis	17	17	1
superpathway of Clostridium acetobutylicum acidogenic and solventogenic fermentation	17	9	1
superpathway of L-threonine metabolism	18	16	1
heterolactic fermentation	18	16	1
3-hydroxypropanoate/4-hydroxybutanate cycle	18	10	1
superpathway of the 3-hydroxypropanoate cycle	18	7	1
hexitol fermentation to lactate, formate, ethanol and acetate	19	19	1
superpathway of anaerobic sucrose degradation	19	17	1
superpathway of N-acetylneuraminate degradation	22	22	1
superpathway of Kdo2-lipid A biosynthesis	25	24	1