Experiment set9IT040 for Escherichia coli BW25113

Compare to:

LB Anaerobic with Cephalothin sodium salt 0.0000078125 mM

Genes with specific phenotypes:

  gene name fitness t score description  
b0433 ampG -4.5 -14.0 muropeptide transporter (NCBI) conserved
b4150 ampC -4.0 -9.6 beta-lactamase/D-alanine carboxypeptidase (NCBI) conserved
b4392 slt -3.8 -15.2 soluble lytic murein transglycosylase (VIMSS) conserved
b0381 ddlA -3.2 -8.0 D-alanylalanine synthetase (NCBI) compare
b0110 ampD -3.1 -8.9 N-acetyl-anhydromuranmyl-L-alanine amidase (NCBI) conserved
b0434 yajG -2.6 -6.8 putative polymerase/proteinase (VIMSS) conserved
b0211 mltD -2.4 -8.9 predicted membrane-bound lytic murein transglycosylase D (NCBI) conserved
b0633 rlpA -2.3 -8.5 minor lipoprotein (NCBI) compare
b0841 ybjG -2.3 -5.0 undecaprenyl pyrophosphate phosphatase (NCBI) compare
b3999 yjaG -2.2 -5.6 hypothetical protein (NCBI) compare
b3617 kbl -2.1 -6.5 2-amino-3-ketobutyrate coenzyme A ligase (NCBI) compare
b2896 ygfX -2.0 -5.4 hypothetical protein (NCBI) compare
b2174 b2174 -2.0 -8.0 orf, hypothetical protein (VIMSS) compare
b3150 yraP -2.0 -6.5 hypothetical protein (NCBI) compare
b3610 grxC -2.0 -7.7 glutaredoxin 3 (NCBI) compare
b2813 mltA -1.9 -9.6 membrane-bound lytic murein transglycosylase A (NCBI) compare
b2701 mltB -1.9 -6.6 membrane-bound lytic murein transglycosylase B (NCBI) compare
b3869 glnL -1.8 -7.1 sensory histidine kinase in two-component regulatory system with GlnG (NCBI) compare
b0820 ybiT -1.8 -6.6 fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) compare
b3166 truB -1.6 -6.4 tRNA pseudouridine synthase B (NCBI) compare
b0081 mraZ -1.6 -5.3 hypothetical protein (NCBI) compare
b0742 ybgF -1.6 -5.8 hypothetical protein (NCBI) compare
b2156 lysP -1.6 -8.2 lysine transporter (NCBI) compare
b4206 ytfB -1.6 -5.3 orf, hypothetical protein (VIMSS) compare
b3349 slyD -1.6 -5.3 FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) (NCBI) compare
b4324 uxuR -1.5 -7.6 DNA-binding transcriptional repressor (NCBI) compare
b4220 ytfM -1.5 -7.0 predicted outer membrane protein and surface antigen (NCBI) compare
b0877 ybjX -1.4 -6.0 hypothetical protein (NCBI) compare
b3406 greB -1.4 -5.3 transcription elongation factor GreB (NCBI) compare
b2730 hypE -1.4 -6.0 carbamoyl phosphate phosphatase, hydrogenase 3 maturation protein (RefSeq) compare
b4221 ytfN -1.4 -9.3 hypothetical protein (NCBI) compare
b3207 yrbL -1.4 -5.6 hypothetical protein (NCBI) compare
b4233 mpl -1.3 -7.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (NCBI) conserved
b4124 dcuR -1.3 -6.3 DNA-binding response regulator in two-component regulatory system with DcuS (NCBI) compare
b4125 dcuS -1.2 -5.5 sensory histidine kinase in two-component regulatory system with DcuR, regulator of anaerobic fumarate respiration (NCBI) compare
b2558 mltF -1.2 -6.9 predicted periplasmic binding protein/transglycosylase (RefSeq) conserved
b0411 tsx -1.1 -5.6 nucleoside channel, receptor of phage T6 and colicin K (NCBI) compare
b3655 yicH -1.1 -6.6 hypothetical protein (NCBI) compare
b2240 glpT -1.0 -5.5 sn-glycerol-3-phosphate transporter (NCBI) compare
b4359 mdoB +1.0 7.8 phosphoglycerol transferase I (VIMSS) compare
b3391 hofQ +1.3 8.3 predicted fimbrial transporter (NCBI) compare
b3515 gadW +1.3 6.3 DNA-binding transcriptional activator (NCBI) compare
b3749 rbsA +1.4 6.4 fused D-ribose transporter subunits of ABC superfamily: ATP-binding components (NCBI) compare
b3248 yhdE +1.4 5.4 Maf-like protein (NCBI) compare
b2204 napH +1.4 5.2 quinol dehydrogenase membrane component (NCBI) compare
b2092 gatC +1.4 5.3 galactitol-specific enzyme IIC component of PTS (NCBI) compare
b3146 yraL +1.5 6.3 predicted methyltransferase (NCBI) compare
b3646 yicG +1.6 9.8 orf, hypothetical protein (VIMSS) compare
b3283 yrdD +1.6 8.7 predicted DNA topoisomerase (NCBI) compare
b1238 tdk +1.6 6.7 thymidine kinase (NCBI) compare
b2186 yejK +1.7 10.3 nucleoid-associated protein NdpA (NCBI) compare
b2749 ygbE +1.8 7.8 conserved inner membrane protein (NCBI) conserved
b3751 rbsB +1.9 5.6 D-ribose transporter subunit (NCBI) compare
b0146 sfsA +1.9 5.3 sugar fermentation stimulation protein A (NCBI) compare
b3347 fkpA +2.0 12.4 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) (NCBI) compare
b3673 emrD +2.0 15.2 2-module integral membrane pump; multidrug resistance (VIMSS) compare
b3963 fabR +2.2 11.2 DNA-binding transcriptional repressor (RefSeq) compare
b0418 pgpA +2.4 11.8 phosphatidylglycerophosphatase A (NCBI) compare
b3009 yghB +2.5 10.7 conserved inner membrane protein (NCBI) conserved
b3780 rhlB +2.6 15.9 ATP-dependent RNA helicase (NCBI) compare
b0148 hrpB +2.7 8.8 helicase, ATP-dependent (VIMSS) compare
b0393 rdgC +2.9 22.0 recombination associated protein (NCBI) compare
b0122 yacC +3.4 8.6 orf, hypothetical protein (VIMSS) compare
b0147 yadP +3.9 14.7 orf, hypothetical protein (VIMSS) compare


Specific phenotypes for stress Cephalothin sodium salt across organisms