Experiment set9IT037 for Escherichia coli BW25113
LB Anaerobic with Trimethoprim 0.00000125 mM
Group: stressMedia: LB + Trimethoprim (1.25E-03 mM)
Culturing: Keio_ML9a, 96 deep-well microplate; Multitron, Anaerobic, at 37 (C), shaken=0 rpm
By: Hans_Hualan on 7/20/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 4 genes in this experiment
For stress Trimethoprim in Escherichia coli BW25113
For stress Trimethoprim across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Capsular heptose biosynthesis | 1 |
| Deoxyribose and Deoxynucleoside Catabolism | 1 |
| LOS core oligosaccharide biosynthesis | 1 |
| Trehalose Uptake and Utilization | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Pentose phosphate pathway
- Pentose and glucuronate interconversions
- Galactose metabolism
- Purine metabolism
- Inositol phosphate metabolism
- Biosynthesis of ansamycins
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| 2-deoxy-α-D-ribose 1-phosphate degradation | 3 | 3 | 1 |
| GDP-D-glycero-α-D-manno-heptose biosynthesis | 4 | 1 | 1 |
| ADP-L-glycero-β-D-manno-heptose biosynthesis | 5 | 5 | 1 |
| superpathway of pyrimidine deoxyribonucleosides degradation | 6 | 6 | 1 |
| purine ribonucleosides degradation | 6 | 6 | 1 |
| superpathway of purine deoxyribonucleosides degradation | 7 | 7 | 1 |