Experiment set9IT033 for Pseudomonas putida KT2440

Compare to:

LB 0.1x with 55.5 mM D-Glucose; pH 4.6

200 most important genes:

  gene name fitness t score description  
PP_2645 -3.7 -14.1 magnesium transporter, ATP-dependent compare
PP_0368 -3.5 -14.2 putative Acyl-CoA dehydrogenase compare
PP_4700 -3.1 -2.1 pantothenate synthetase compare
PP_4994 -3.0 -4.5 conserved protein of unknown function compare
PP_0951 -2.9 -8.6 Ribosome hibernation promoting factor compare
PP_3519 -2.7 -1.2 putative Lipoprotein compare
PP_4909 -2.7 -6.7 phosphoserine phosphatase compare
PP_1198 -2.6 -3.8 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4779 -2.5 -14.5 AMP nucleosidase compare
PP_5095 -2.4 -2.2 pyrroline-5-carboxylate reductase compare
PP_5502 -2.4 -6.0 ribosome modulation factor compare
PP_0691 -2.4 -1.6 Glutamate 5-kinase compare
PP_0145 -2.2 -8.2 Na+/Pi-cotransporter compare
PP_0293 -2.1 -4.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4937 -2.1 -3.8 toluene tolerance protein compare
PP_2136 -2.1 -5.1 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_5508 -2.0 -1.8 conserved protein of unknown function compare
PP_0007 -2.0 -2.4 conserved hypothetical protein compare
PP_5090 -1.9 -1.7 putative cell division protein compare
PP_0164 -1.9 -7.1 conserved protein of unknown function compare
PP_4696 -1.8 -2.6 Nitrogen regulation protein NR(I) compare
PP_2217 -1.8 -3.8 enoyl-CoA hydratase compare
PP_4058 -1.8 -2.6 1,4-alpha-glucan branching enzyme compare
PP_0339 -1.7 -4.3 Pyruvate dehydrogenase E1 component compare
PP_4593 -1.7 -1.5 conserved protein of unknown function compare
PP_1623 -1.7 -8.6 RNA polymerase, sigma S (sigma 38) factor compare
PP_5145 -1.7 -14.3 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0345 -1.6 -4.7 putative Heptose kinase WapP compare
PP_0127 -1.6 -2.3 Thiol:disulfide interchange protein compare
PP_5140 -1.6 -3.1 Transcriptional regulator, MerR family compare
PP_3924 -1.6 -4.0 conserved protein of unknown function compare
PP_0902 -1.6 -8.7 integral membrane sensor signal transduction histidine kinase compare
PP_2646 -1.6 -1.9 conserved protein of unknown function compare
PP_4517 -1.5 -1.6 conserved protein of unknown function compare
PP_4902 -1.5 -1.4 Oligoribonuclease compare
PP_4724 -1.5 -1.0 Carbamoyl-phosphate synthase small chain compare
PP_0292 -1.5 -3.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2087 -1.5 -2.0 CmpX protein compare
PP_5182 -1.5 -7.4 polyamine:pyruvate transaminase compare
PP_0290 -1.5 -6.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5139 -1.5 -4.4 cadmium translocating P-type ATPase compare
PP_0901 -1.4 -5.4 DNA-binding response regulator compare
PP_5155 -1.4 -4.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1906 -1.4 -3.6 ribosomal large subunit pseudouridine synthase C compare
PP_2137 -1.4 -2.5 beta-ketoadipyl CoA thiolase, beta component compare
PP_1752 -1.4 -7.4 conserved protein of unknown function compare
PP_5350 -1.4 -2.3 Transcriptional regulator, RpiR family compare
PP_1912 -1.3 -4.6 Phosphate acyltransferase compare
PP_1553 -1.3 -2.3 conserved protein of unknown function compare
PP_5320 -1.3 -4.8 two-component system DNA-binding transcriptional dual response regulator PhoB conserved
PP_4264 -1.3 -6.2 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_1214 -1.3 -1.3 putative transcriptional regulatory protein compare
PP_5094 -1.3 -3.0 putative enzyme with PLP binding domain compare
PP_2088 -1.3 -3.1 RNA polymerase sigma factor SigX compare
PP_4569 -1.3 -3.6 conserved protein of unknown function compare
PP_2028 -1.2 -2.5 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_5007 -1.2 -2.9 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_5321 -1.2 -4.3 two-component system sensory histidine kinase compare
PP_4379 -1.1 -5.2 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4642 -1.1 -1.1 Cyclic diguanosine monophosphate-binding protein compare
PP_2660 -1.1 -6.3 conserved protein of unknown function compare
PP_0063 -1.1 -1.6 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1513 -1.1 -2.1 Ribosomal RNA small subunit methyltransferase J compare
PP_5453 -1.1 -0.9 conserved protein of unknown function compare
PP_1216 -1.1 -0.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2144 -1.1 -3.1 Transcriptional regulator, TetR family compare
PP_0566 -1.1 -1.4 translation-related factor compare
PP_1054 -1.1 -2.4 Type II secretion pathway protein XcpZ compare
PP_5183 -1.1 -5.7 glutamylpolyamine synthetase compare
PP_2348 -1.0 -3.5 Sensor histidine kinase compare
PP_3286 -1.0 -3.9 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_0913 -1.0 -4.6 conserved exported protein of unknown function compare
PP_4204 -1.0 -3.5 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1664 -1.0 -1.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_2080 -1.0 -7.8 NAD-specific glutamate dehydrogenase compare
PP_3102 -1.0 -2.3 conserved protein of unknown function compare
PP_4910 -1.0 -0.6 conserved protein of unknown function compare
PP_5313 -1.0 -2.6 DNA-binding protein HU-alpha compare
PP_4342 -1.0 -2.2 flagellar synthesis regulator, putative ATPase compare
PP_1663 -1.0 -4.9 conserved exported protein of unknown function compare
PP_3999 -1.0 -4.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5084 -1.0 -3.3 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_4109 -1.0 -2.1 conserved protein of unknown function compare
PP_2060 -1.0 -1.8 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_2459 -1.0 -3.0 ribose pyranase compare
PP_4364 -1.0 -3.5 putative Anti-sigma F factor antagonist compare
PP_1185 -0.9 -3.2 Outer membrane protein H1 compare
PP_1654 -0.9 -1.6 cysteine synthase B compare
PP_4214 -0.9 -2.5 pyoverdine biosynthesis related protein compare
PP_1293 -0.9 -1.9 molybdopterin synthase small subunit compare
PP_3064 -0.9 -1.9 Phage tail protein compare
PP_0362 -0.9 -6.2 Biotin synthase compare
PP_1187 -0.9 -2.8 sensor protein compare
PP_1589 -0.9 -4.8 uridylyltransferase compare
PP_4961 -0.9 -1.4 putative Lipoprotein compare
PP_5328 -0.9 -3.0 putative phosphate transport system permease protein compare
PP_4198 -0.9 -3.5 OmpA family protein compare
PP_1568 -0.9 -1.2 conserved protein of unknown function compare
PP_1678 -0.9 -2.2 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_5439 -0.9 -2.9 conserved protein of unknown function compare
PP_4785 -0.9 -4.8 conserved exported protein of unknown function compare
PP_5748 -0.8 -1.1 cytochrome c heme lyase subunit compare
PP_4942 -0.8 -1.6 conserved protein of unknown function compare
PP_0401 -0.8 -1.8 Ribosomal RNA small subunit methyltransferase A compare
PP_4009 -0.8 -2.2 ATP-dependent Clp protease adapter protein ClpS compare
PP_5191 -0.8 -2.1 conserved exported protein of unknown function compare
PP_5014 -0.8 -2.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_3244 -0.8 -3.1 Magnesium transporter, MgtC family compare
PP_4215 -0.8 -2.0 pyoverdine biosynthesis related protein compare
PP_2360 -0.8 -3.3 putative type 1 pili subunit CsuA/B protein compare
PP_1190 -0.8 -2.2 conserved protein of unknown function compare
PP_0874 -0.8 -1.4 conserved protein of unknown function compare
PP_5184 -0.8 -3.5 glutamylpolyamine synthetase compare
PP_0643 -0.8 -1.2 protein of unknown function compare
PP_0909 -0.8 -4.0 conserved exported protein of unknown function compare
PP_2958 -0.8 -1.8 Glutaredoxin compare
PP_2932 -0.8 -4.5 Amidase family protein compare
PP_0855 -0.8 -1.5 conserved protein of unknown function compare
PP_5346 -0.8 -3.8 pyruvate carboxylase subunit B compare
PP_1673 -0.8 -2.9 cobyrinate a,c-diamide synthase compare
PP_4213 -0.8 -2.0 putative dipeptidase compare
PP_0753 -0.8 -4.6 putative Lipoprotein compare
PP_2414 -0.8 -1.2 conserved exported protein of unknown function compare
PP_0003 -0.8 -1.7 16S RNA methyltransferase compare
PP_0274 -0.8 -1.7 putative transcriptional regulator containing HTH domain compare
PP_2304 -0.8 -3.5 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_3453 -0.8 -5.4 putative Sensor protein RstB compare
PP_5025 -0.8 -5.1 Glucans biosynthesis glucosyltransferase H compare
PP_0872 -0.8 -3.0 Peptide chain release factor 3 compare
PP_3693 -0.7 -1.8 putative Transcriptional regulator MvaT, P16 subunit compare
PP_3105 -0.7 -1.5 conserved membrane protein of unknown function compare
PP_4399 -0.7 -4.5 putative Glutamine synthetase compare
PP_3043 -0.7 -1.9 conserved protein of unknown function compare
PP_1068 -0.7 -1.7 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_2378 -0.7 -1.3 Fe/S biogenesis protein NfuA compare
PP_3808 -0.7 -1.2 Antibiotic synthesis protein MbtH compare
PP_2889 -0.7 -3.6 putative Transmembrane regulator PrtR compare
PP_5487 -0.7 -2.4 conserved protein of unknown function compare
PP_t10 -0.7 -1.1 tRNA-Pro compare
PP_0923 -0.7 -2.5 Acyltransferase compare
PP_2169 -0.7 -3.5 tRNA-dihydrouridine synthase A compare
PP_0967 -0.7 -3.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1038 -0.7 -1.2 conserved protein of unknown function compare
PP_1824 -0.7 -1.3 Smr domain protein compare
PP_1224 -0.7 -2.3 periplasmic subunit of the TolQRA transport system compare
PP_0900 -0.7 -2.3 PAP2 family protein compare
PP_0758 -0.7 -2.9 conserved protein of unknown function compare
PP_4561 -0.7 -0.7 stress response protein compare
PP_4993 -0.7 -1.7 Glutathione synthetase compare
PP_1898 -0.7 -0.8 MotA/TolQ/ExbB proton channel family protein compare
PP_3332 -0.7 -1.5 putative cytochrome c-type protein compare
PP_4722 -0.7 -2.0 Transcription elongation factor GreA compare
PP_4726 -0.7 -1.7 Chaperone protein DnaJ compare
PP_5077 -0.7 -4.0 conserved protein of unknown function compare
PP_0910 -0.7 -3.0 conserved exported protein of unknown function compare
PP_1034 -0.7 -4.4 multicopper oxidase compare
PP_3365 -0.7 -0.8 Acetolactate synthase compare
PP_4208 -0.7 -3.8 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_1322 -0.7 -0.8 putative Lipoprotein compare
PP_4819 -0.7 -3.5 conserved protein of unknown function compare
PP_4362 -0.7 -1.5 conserved protein of unknown function compare
PP_3625 -0.7 -2.5 Transporter, LysE family compare
PP_0961 -0.7 -2.9 toluene tolerance protein compare
PP_2328 -0.7 -2.5 Phosphoadenosine phosphosulfate reductase compare
PP_4828 -0.7 -1.2 Precorrin-8X methylmutase compare
PP_2525 -0.7 -2.4 conserved protein of unknown function compare
PP_3474 -0.7 -2.2 putative Curli fiber protein CsgE compare
PP_0185 -0.7 -4.1 Positive alginate biosynthesis regulatory protein compare
PP_0697 -0.7 -3.6 ribosomal-protein-S18-alanine N-acetyltransferase compare
PP_4528 -0.7 -1.4 conserved protein of unknown function compare
PP_0184 -0.7 -2.5 Argininosuccinate lyase compare
PP_4286 -0.7 -3.5 allantoinase compare
PP_1304 -0.7 -4.3 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4180 -0.7 -2.1 conserved protein of unknown function compare
PP_0980 -0.7 -3.2 Probable cytosol aminopeptidase compare
PP_4609 -0.7 -2.5 conserved membrane protein of unknown function compare
PP_1083 -0.7 -2.6 (2Fe-2S)-binding protein compare
PP_3835 -0.7 -3.6 Sensory box histidine kinase compare
PP_4573 -0.7 -3.4 ATPase, AAA family compare
PP_5035 -0.7 -2.4 Histidine utilization repressor compare
PP_3034 -0.7 -1.8 putative Regulator protein compare
PP_4478 -0.7 -3.9 N-succinylglutamate 5-semialdehyde dehydrogenase compare
PP_4793 -0.7 -1.5 conserved protein of unknown function compare
PP_2740 -0.7 -1.5 Transcriptional regulator, MerR family compare
PP_4984 -0.6 -3.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4409 -0.6 -2.8 Site-specific recombinase, phage integrase family compare
PP_1201 -0.6 -2.6 conserved exported protein of unknown function compare
PP_5216 -0.6 -1.1 exopolyphosphatase compare
PP_5745 -0.6 -3.4 paraquat-inducible protein A compare
PP_0674 -0.6 -4.5 ADP/ATP ratio sensor and inhibitor of translation compare
PP_5100 -0.6 -1.8 dITP/XTP pyrophosphatase compare
PP_1309 -0.6 -3.6 conserved exported protein of unknown function compare
PP_0564 -0.6 -4.0 conserved protein of unknown function compare
PP_0236 -0.6 -1.2 NAD(P)H-dependent FMN reductase subunit compare
PP_5533 -0.6 -1.0 conserved protein of unknown function compare
PP_1702 -0.6 -1.5 Recombination-associated protein RdgC compare
PP_1460 -0.6 -4.4 putative Membrane protein compare
PP_5654 -0.6 -1.5 putative phosphotriesterase compare
PP_4610 -0.6 -4.0 conserved protein of unknown function containing PepSY-associated TM helix domain compare
PP_1672 -0.6 -1.7 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare


Specific Phenotypes

For 7 genes in this experiment

For pH D-Glucose in Pseudomonas putida KT2440

For pH D-Glucose across organisms