| | gene | name | fitness | t score | description | |
|---|
| b3021 | ygiT | -3.7 | -2.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0462 | acrB | -3.5 | -17.1 | multidrug efflux system protein (NCBI) | compare |
| b1334 | fnr | -3.5 | -3.3 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b0463 | acrA | -3.3 | -11.6 | multidrug efflux system (NCBI) | compare |
| b1677 | lpp | -3.2 | -3.1 | murein lipoprotein (NCBI) | compare |
| b0737 | tolQ | -2.9 | -2.0 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b3035 | tolC | -2.9 | -8.0 | outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) | compare |
| b2188 | yejM | -2.9 | -10.4 | predicted hydrolase, inner membrane (NCBI) | compare |
| b0677 | nagA | -2.8 | -5.8 | N-acetylglucosamine-6-phosphate deacetylase (NCBI) | compare |
| b2346 | vacJ | -2.7 | -8.5 | predicted lipoprotein (NCBI) | compare |
| b1855 | lpxM | -2.7 | -6.3 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b3784 | rfe | -2.7 | -13.8 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b4025 | pgi | -2.6 | -8.5 | glucose-6-phosphate isomerase (NCBI) | compare |
| b3632 | rfaQ | -2.6 | -14.7 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b0053 | surA | -2.6 | -3.5 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b0741 | pal | -2.5 | -3.0 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b3192 | yrbC | -2.5 | -10.6 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b3194 | yrbE | -2.5 | -11.3 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b3193 | yrbD | -2.4 | -9.0 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b2168 | fruK | -2.4 | -1.5 | 1-phosphofructokinase (NCBI) | compare |
| b3465 | yhhF | -2.2 | -6.3 | predicted methyltransferase (NCBI) | compare |
| b1150 | ymfR | -2.2 | -1.7 | e14 prophage; predicted protein (NCBI) | compare |
| b3163 | nlpI | -2.2 | -4.8 | hypothetical protein (NCBI) | compare |
| b2620 | smpB | -2.2 | -1.4 | SsrA-binding protein (NCBI) | compare |
| b0740 | tolB | -2.1 | -3.5 | translocation protein TolB precursor (NCBI) | compare |
| b4505 | insX | -2.1 | -2.0 | predicted IS protein (RefSeq) | compare |
| b3195 | yrbF | -2.1 | -10.5 | predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b0739 | tolA | -2.1 | -1.4 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b0014 | dnaK | -2.1 | -2.3 | molecular chaperone DnaK (NCBI) | compare |
| b2512 | yfgL | -2.1 | -6.0 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b3052 | rfaE | -2.0 | -5.0 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b3842 | rfaH | -2.0 | -4.8 | transcriptional activator RfaH (NCBI) | compare |
| b3199 | yrbK | -2.0 | -2.6 | hypothetical protein (NCBI) | compare |
| b3619 | rfaD | -2.0 | -1.9 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b3649 | rpoZ | -1.9 | -3.1 | DNA-directed RNA polymerase subunit omega (NCBI) | compare |
| b0437 | clpP | -1.9 | -5.4 | ATP-dependent Clp protease proteolytic subunit (NCBI) | compare |
| b1830 | prc | -1.9 | -4.6 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b3631 | rfaG | -1.9 | -9.3 | glucosyltransferase I (NCBI) | compare |
| b1429 | tehA | -1.9 | -1.9 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b3191 | yrbB | -1.8 | -8.2 | orf, hypothetical protein (VIMSS) | compare |
| b3787 | rffD | -1.8 | -10.3 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) | compare |
| b1346 | ydaQ | -1.8 | -2.0 | orf, hypothetical protein (VIMSS) | compare |
| b3630 | rfaP | -1.8 | -5.5 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b0438 | clpX | -1.8 | -5.7 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b3082 | ygjM | -1.8 | -1.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3229 | sspA | -1.8 | -2.3 | stringent starvation protein A (NCBI) | compare |
| b2571 | rseB | -1.8 | -6.7 | periplasmic negative regulator of sigmaE (NCBI) | compare |
| b4695 | ykgT | -1.7 | -2.5 | no description | compare |
| b0688 | pgm | -1.7 | -3.0 | phosphoglucomutase (NCBI) | compare |
| b0222 | lpcA | -1.7 | -2.9 | phosphoheptose isomerase (NCBI) | compare |
| b4237 | nrdG | -1.7 | -7.8 | anaerobic ribonucleotide reductase activating protein (NCBI) | compare |
| b3443 | yrhA | -1.7 | -1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1936 | intG | -1.7 | -1.1 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b2017 | yefM | -1.7 | -1.0 | orf, hypothetical protein (VIMSS) | compare |
| b3627 | rfaI | -1.7 | -5.8 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b0178 | hlpA | -1.7 | -4.3 | periplasmic chaperone (NCBI) | compare |
| b0471 | ybaB | -1.7 | -3.6 | hypothetical protein (NCBI) | compare |
| b4503 | yafF | -1.6 | -1.1 | no description | compare |
| b3786 | rffE | -1.6 | -10.6 | UDP-N-acetyl glucosamine-2-epimerase (NCBI) | compare |
| b1758 | b1758 | -1.6 | -1.7 | putative cytochrome oxidase (VIMSS) | compare |
| b1882 | cheY | -1.6 | -0.8 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b2317 | dedA | -1.6 | -3.6 | conserved inner membrane protein (NCBI) | compare |
| b1103 | ycfF | -1.6 | -1.7 | orf, hypothetical protein (VIMSS) | compare |
| b2174 | b2174 | -1.6 | -7.1 | orf, hypothetical protein (VIMSS) | compare |
| b4509 | ylcG | -1.5 | -2.4 | DLP12 prophage; predicted protein (NCBI) | compare |
| b0605 | ahpC | -1.5 | -3.8 | alkyl hydroperoxide reductase, C22 subunit (NCBI) | compare |
| b4238 | nrdD | -1.5 | -10.7 | anaerobic ribonucleoside triphosphate reductase (NCBI) | compare |
| b3839 | tatC | -1.5 | -5.4 | TatABCE protein translocation system subunit (NCBI) | compare |
| b0730 | mngR | -1.5 | -1.0 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b3621 | rfaC | -1.5 | -3.5 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b1438 | ydcQ | -1.5 | -3.7 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b3628 | rfaB | -1.4 | -5.8 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase (RefSeq) | compare |
| b3026 | qseC | -1.4 | -1.4 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b1236 | galU | -1.4 | -3.0 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b3794 | rffM | -1.4 | -6.4 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b0957 | ompA | -1.4 | -2.7 | outer membrane protein A (3a;II*;G;d) (NCBI) | compare |
| b0683 | fur | -1.4 | -1.4 | ferric uptake regulator (NCBI) | compare |
| b3930 | menA | -1.4 | -10.0 | 1,4-dihydroxy-2-naphthoate octaprenyltransferase (NCBI) | compare |
| b3600 | mtlD | -1.4 | -7.5 | mannitol-1-phosphate 5-dehydrogenase (NCBI) | compare |
| b3609 | secB | -1.3 | -3.8 | export protein SecB (NCBI) | compare |
| b0877 | ybjX | -1.3 | -6.1 | hypothetical protein (NCBI) | compare |
| b0819 | ybiS | -1.3 | -6.6 | hypothetical protein (NCBI) | compare |
| b0145 | dksA | -1.3 | -2.4 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b4529 | ydbJ | -1.3 | -1.3 | hypothetical protein (NCBI) | compare |
| b3620 | rfaF | -1.3 | -3.6 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b4458 | oxyS | -1.3 | -1.2 | global regulatory RNA (NCBI) | compare |
| b2572 | rseA | -1.3 | -5.1 | anti-sigma factor (NCBI) | compare |
| b1506 | yneL | -1.3 | -1.2 | predicted transcriptional regulator (NCBI) | compare |
| b4402 | yjjY | -1.3 | -1.1 | hypothetical protein (NCBI) | compare |
| b2064 | asmA | -1.2 | -4.0 | predicted assembly protein (NCBI) | compare |
| b0080 | fruR | -1.2 | -4.9 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1192 | ldcA | -1.2 | -4.1 | L,D-carboxypeptidase A (NCBI) | compare |
| b4480 | hdfR | -1.2 | -4.2 | transcriptional regulator HdfR (NCBI) | compare |
| b4608 | ryfC | -1.2 | -3.2 | Novel sRNA, function unknown (RefSeq) | compare |
| b1413 | hrpA | -1.2 | -6.7 | ATP-dependent helicase (RefSeq) | conserved |
| b1823 | cspC | -1.2 | -1.7 | stress protein, member of the CspA-family (NCBI) | compare |
| b4383 | deoB | -1.2 | -6.2 | phosphopentomutase (NCBI) | compare |
| b2859 | ygeO | -1.2 | -1.5 | hypothetical protein (RefSeq) | compare |
| b1765 | ydjA | -1.2 | -1.2 | predicted oxidoreductase (NCBI) | compare |
| b1104 | ycfL | -1.2 | -2.0 | hypothetical protein (NCBI) | compare |
| b3838 | tatB | -1.2 | -5.7 | sec-independent translocase (NCBI) | compare |
| b4410 | ecnA | -1.1 | -1.2 | entericidin A membrane lipoprotein, antidote entericidin B (NCBI) | compare |
| b1831 | proQ | -1.1 | -3.0 | putative solute/DNA competence effector (NCBI) | compare |
| b3206 | npr | -1.1 | -3.3 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b3387 | dam | -1.1 | -6.4 | DNA adenine methylase (NCBI) | compare |
| b1348 | lar | -1.1 | -1.4 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b0049 | apaH | -1.1 | -2.1 | diadenosinetetraphosphatase (NCBI) | compare |
| b2363 | yfdT | -1.1 | -1.4 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |
| b1818 | manY | -1.0 | -2.0 | mannose-specific enzyme IIC component of PTS (NCBI) | compare |
| b2494 | yfgC | -1.0 | -4.9 | predicted peptidase (NCBI) | compare |
| b0998 | torD | -1.0 | -1.2 | chaperone protein TorD (NCBI) | compare |
| b3164 | pnp | -1.0 | -1.9 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b4535 | yniD | -1.0 | -1.2 | predicted protein (RefSeq) | compare |
| b2288 | nuoA | -1.0 | -2.5 | NADH dehydrogenase I chain A (VIMSS) | compare |
| b1493 | gadB | -1.0 | -0.7 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b4201 | priB | -1.0 | -2.1 | primosomal replication protein N (NCBI) | compare |
| b0764 | modB | -1.0 | -3.4 | molybdate ABC transporter permease protein (NCBI) | compare |
| b2393 | nupC | -1.0 | -4.5 | nucleoside (except guanosine) transporter (NCBI) | compare |
| b0826 | moeB | -1.0 | -4.7 | molybdopterin biosynthesis protein MoeB (NCBI) | compare |
| b2659 | b2659 | -1.0 | -0.8 | orf, hypothetical protein (VIMSS) | compare |
| b1123 | potD | -1.0 | -3.6 | spermidine/putrescine ABC transporter periplasmic substrate-binding protein (NCBI) | compare |
| b0239 | frsA | -1.0 | -5.4 | fermentation/respiration switch protein (NCBI) | compare |
| b0763 | modA | -1.0 | -3.8 | molybdate transporter subunit (NCBI) | compare |
| b0781 | moaA | -1.0 | -5.2 | molybdenum cofactor biosynthesis protein A (NCBI) | compare |
| b0783 | moaC | -1.0 | -3.9 | molybdenum cofactor biosynthesis protein C (NCBI) | compare |
| b2318 | truA | -1.0 | -2.2 | tRNA pseudouridine synthase A (NCBI) | compare |
| b3034 | nudF | -1.0 | -4.0 | ADP-ribose pyrophosphatase (NCBI) | compare |
| b4519 | icdC | -1.0 | -2.8 | no description | compare |
| b3237 | argR | -1.0 | -2.6 | arginine repressor (NCBI) | compare |
| b1819 | manZ | -0.9 | -3.0 | mannose-specific enzyme IID component of PTS (NCBI) | compare |
| b1591 | b1591 | -0.9 | -1.5 | putative oxidoreductase component (VIMSS) | compare |
| b0902 | pflA | -0.9 | -4.5 | pyruvate formate lyase activating enzyme 1 (NCBI) | compare |
| b0965 | b0965 | -0.9 | -2.2 | orf, hypothetical protein (VIMSS) | compare |
| b0950 | pqiA | -0.9 | -4.5 | paraquat-inducible membrane protein A (NCBI) | compare |
| b2258 | b2258 | -0.9 | -1.2 | putative transport/receptor protein (VIMSS) | compare |
| b0388 | aroL | -0.9 | -3.0 | shikimate kinase II (NCBI) | compare |
| b3616 | tdh | -0.9 | -3.6 | L-threonine 3-dehydrogenase (NCBI) | compare |
| b1175 | minD | -0.9 | -2.5 | membrane ATPase of the MinC-MinD-MinE system (NCBI) | compare |
| b2830 | nudH | -0.9 | -0.9 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b4550 | yhdL | -0.9 | -3.7 | hypothetical protein (NCBI) | compare |
| b1520 | b1520 | -0.9 | -2.3 | orf, hypothetical protein (VIMSS) | compare |
| b3183 | obgE | -0.9 | -0.8 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b0009 | mog | -0.9 | -4.5 | molybdenum cofactor biosynthesis protein (NCBI) | compare |
| b3790 | rffC | -0.9 | -3.4 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b2617 | smpA | -0.9 | -2.0 | small membrane protein A (VIMSS) | compare |
| b2329 | aroC | -0.9 | -3.0 | chorismate synthase (NCBI) | compare |
| b2479 | gcvR | -0.9 | -3.1 | transcriptional regulation of gcv operon (VIMSS) | compare |
| b1241 | adhE | -0.9 | -5.3 | fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase (NCBI) | compare |
| b3341 | rpsG | -0.9 | -1.1 | 30S ribosomal protein S7 (NCBI) | compare |
| b0951 | pqiB | -0.9 | -4.6 | paraquat-inducible protein B (NCBI) | compare |
| b3228 | sspB | -0.8 | -2.5 | ClpXP protease specificity-enhancing factor (NCBI) | compare |
| b0247 | ykfG | -0.8 | -1.1 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b0436 | tig | -0.8 | -4.1 | trigger factor (NCBI) | compare |
| b2330 | yfcB | -0.8 | -0.7 | putative adenine-specific methylase (VIMSS) | compare |
| b0827 | moeA | -0.8 | -2.5 | molybdopterin biosynthesis protein (NCBI) | compare |
| b3349 | slyD | -0.8 | -3.8 | FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) (NCBI) | compare |
| b2498 | upp | -0.8 | -1.9 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b0226 | dinJ | -0.8 | -2.5 | predicted antitoxin of YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b0759 | galE | -0.8 | -3.7 | UDP-galactose-4-epimerase (VIMSS) | compare |
| b1730 | ydjO | -0.8 | -0.5 | predicted protein (RefSeq) | compare |
| b0738 | tolR | -0.8 | -1.0 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b3493 | pitA | -0.8 | -3.4 | phosphate transporter, low-affinity (NCBI) | compare |
| b0232 | yafN | -0.8 | -0.5 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b0082 | mraW | -0.8 | -2.0 | S-adenosyl-methyltransferase (NCBI) | compare |
| b1025 | ycdT | -0.8 | -0.7 | predicted diguanylate cyclase (NCBI) | compare |
| b0460 | hha | -0.8 | -2.3 | modulator of gene expression, with H-NS (NCBI) | compare |
| b1595 | ynfL | -0.8 | -1.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1569 | dicC | -0.8 | -2.1 | Qin prophage; DNA-binding transcriptional regulator for DicB (NCBI) | compare |
| b2085 | b2085 | -0.8 | -1.8 | orf, hypothetical protein (VIMSS) | compare |
| b3479 | nikD | -0.8 | -4.3 | nickel transporter subunit (NCBI) | compare |
| b0784 | moaD | -0.8 | -1.5 | molybdopterin synthase, small subunit (NCBI) | compare |
| b3644 | yicC | -0.7 | -3.0 | hypothetical protein (NCBI) | compare |
| b2198 | ccmD | -0.7 | -1.7 | cytochrome c biogenesis protein (NCBI) | compare |
| b2426 | ucpA | -0.7 | -1.5 | putative oxidoreductase (VIMSS) | compare |
| b4481 | rffT | -0.7 | -3.5 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b2727 | hypB | -0.7 | -2.8 | GTP hydrolase involved in nickel liganding into hydrogenases (NCBI) | compare |
| b2897 | ygfY | -0.7 | -2.2 | hypothetical protein (NCBI) | compare |
| b2814 | metZ | -0.7 | -1.0 | tRNA-Met (NCBI) | compare |
| b2712 | hypF | -0.7 | -4.7 | carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases (NCBI) | compare |
| b3477 | nikB | -0.7 | -4.7 | nickel transporter subunit (NCBI) | compare |
| b1960 | vsr | -0.7 | -2.1 | DNA mismatch endonuclease of very short patch repair (NCBI) | compare |
| b2783 | chpR | -0.7 | -1.6 | antitoxin of the ChpA-ChpR toxin-antitoxin system (NCBI) | compare |
| b3785 | wzzE | -0.7 | -5.5 | putative transport protein (VIMSS) | compare |
| b0765 | modC | -0.7 | -2.9 | molybdate transporter subunit (NCBI) | compare |
| b1160 | elbA | -0.7 | -0.4 | hypothetical protein (NCBI) | compare |
| b1951 | rcsA | -0.7 | -0.5 | DNA-binding transcriptional activator, co-regulator with RcsB (NCBI) | compare |
| b1291 | sapD | -0.7 | -0.9 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b0888 | trxB | -0.7 | -1.7 | thioredoxin reductase, FAD/NAD(P)-binding (NCBI) | compare |
| b0908 | aroA | -0.7 | -3.9 | 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) | compare |
| b2375 | yfdX | -0.7 | -1.4 | hypothetical protein (NCBI) | compare |
| b2362 | yfdS | -0.7 | -2.1 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |
| b2698 | recX | -0.7 | -1.6 | RecA regulator RecX (NCBI) | compare |
| b3764 | yifE | -0.7 | -2.5 | hypothetical protein (NCBI) | compare |
| b0761 | modE | -0.7 | -3.0 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b4702 | mgtL | -0.7 | -1.0 | regulatory leader peptide for mgtA (NCBI) | compare |
| b3563 | yiaB | -0.7 | -1.7 | orf, hypothetical protein (VIMSS) | compare |
| b3500 | gor | -0.7 | -0.9 | glutathione reductase (NCBI) | compare |
| b2274 | yfbO | -0.7 | -2.0 | predicted protein (RefSeq) | compare |
| b1088 | yceD | -0.7 | -2.3 | hypothetical protein (NCBI) | compare |
| b1762 | b1762 | -0.7 | -0.6 | orf, hypothetical protein (VIMSS) | compare |