Experiment set9IT032 for Pseudomonas syringae pv. syringae B728a ΔmexB

Compare to:

KB with Gamma-Aminobutyric Acid Hydrochloride 10 mM

200 most detrimental genes:

  gene name fitness t score description  
Psyr_2867 +1.1 3.5 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_0430 +1.1 2.0 conserved hypothetical protein compare
Psyr_3590 +1.0 2.2 conserved hypothetical protein compare
Psyr_3779 +1.0 2.8 GCN5-related N-acetyltransferase compare
Psyr_0432 +1.0 2.2 conserved hypothetical protein compare
Psyr_3299 +0.9 2.1 two component transcriptional regulator, LuxR family compare
Psyr_2388 +0.8 2.3 Twin-arginine translocation pathway signal compare
Psyr_1576 +0.8 2.5 Glutamine amidotransferase, class-II compare
Psyr_1876 +0.8 1.9 conserved hypothetical protein compare
Psyr_4011 +0.8 1.9 Thiolase compare
Psyr_2811 +0.8 2.0 hypothetical protein compare
Psyr_1796 +0.8 1.5 GCN5-related N-acetyltransferase compare
Psyr_1587 +0.8 2.4 Bile acid:sodium symporter compare
Psyr_3284 +0.8 2.2 SOS cell division inhibitor SulA compare
Psyr_2250 +0.8 2.8 transcriptional regulator, GntR family compare
Psyr_2411 +0.7 2.6 Short-chain dehydrogenase/reductase SDR compare
Psyr_1123 +0.7 1.9 conserved hypothetical protein compare
Psyr_2676 +0.7 2.7 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_0898 +0.7 3.1 TRAP dicarboxylate transporter, DctM subunit compare
Psyr_3635 +0.7 1.9 Competence protein ComEA helix-hairpin-helix region compare
Psyr_3611 +0.7 1.2 Protein of unknown function DUF815 compare
Psyr_2443 +0.7 2.4 conserved domain protein compare
Psyr_2901 +0.7 1.3 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_3118 +0.7 2.2 transcriptional regulator, GntR family compare
Psyr_3579 +0.7 1.7 Class I peptide chain release factor compare
Psyr_3795 +0.7 1.7 hypothetical protein compare
Psyr_2569 +0.7 1.3 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
Psyr_5027 +0.7 1.2 bacterial nucleoid protein HU alpha subunit compare
Psyr_2149 +0.7 1.6 conserved hypothetical protein compare
Psyr_2057 +0.7 1.3 acyl-CoA thioesterase II, putative compare
Psyr_2829 +0.7 1.2 conserved hypothetical protein compare
Psyr_2202 +0.7 0.8 ABC transporter compare
Psyr_3710 +0.7 1.7 conserved hypothetical protein compare
Psyr_3783 +0.7 1.8 conserved hypothetical protein compare
Psyr_2482 +0.6 1.5 Secretion protein HlyD compare
Psyr_2930 +0.6 2.2 Glyoxalase/bleomycin resistance protein/dioxygenase compare
Psyr_4830 +0.6 1.0 Binding-protein-dependent transport systems inner membrane component compare
Psyr_2506 +0.6 1.4 amino acid ABC transporter ATP-binding protein, PAAT family compare
Psyr_2497 +0.6 1.7 lipoprotein, putative compare
Psyr_0179 +0.6 1.1 Protein of unknown function DUF1289 compare
Psyr_0085 +0.6 2.5 conserved hypothetical protein compare
Psyr_1883 +0.6 1.8 Hypothetical protein compare
Psyr_2279 +0.6 3.1 conserved hypothetical protein compare
Psyr_2573 +0.6 1.5 transcriptional regulator, DeoR family compare
Psyr_3623 +0.6 1.0 Protein of unknown function DUF1127 compare
Psyr_2294 +0.6 1.3 conserved hypothetical protein compare
Psyr_4726 +0.6 1.8 hypothetical protein compare
Psyr_4455 +0.6 1.4 conserved hypothetical protein compare
Psyr_3703 +0.6 1.7 Flavodoxin/nitric oxide synthase compare
Psyr_2075 +0.6 1.9 5-nucleotidase compare
Psyr_1800 +0.6 1.6 transcriptional regulator, LysR family compare
Psyr_3772 +0.6 1.4 conserved hypothetical protein compare
Psyr_2522 +0.6 2.3 conserved hypothetical protein compare
Psyr_4143 +0.6 1.4 HAD-superfamily hydrolase, subfamily IIIA:Phosphatase YrbI compare
Psyr_3932 +0.6 1.1 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_1430 +0.6 2.1 Protein of unknown function DUF1525 compare
Psyr_3426 +0.6 2.0 adenine phosphoribosyltransferase compare
Psyr_0907 +0.6 1.9 conserved hypothetical protein compare
Psyr_3156 +0.6 1.7 transcriptional regulator, LysR family compare
Psyr_2985 +0.6 2.5 DNA-N1-methyladenine dioxygenase compare
Psyr_4942 +0.6 1.8 HAD-superfamily hydrolase, subfamily IA, variant 3 compare
Psyr_2850 +0.5 2.0 hypothetical protein compare
Psyr_3209 +0.5 1.3 NADH dehydrogenase subunit N compare
Psyr_4634 +0.5 0.8 Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein compare
Psyr_4810 +0.5 2.8 sodium/proton antiporter, CPA1 family compare
Psyr_1541 +0.5 2.7 DedA compare
Psyr_0772 +0.5 1.3 Protein of unknown function DUF1355 compare
Psyr_3154 +0.5 1.6 transcriptional regulator, TetR family compare
Psyr_2414 +0.5 2.6 murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 compare
Psyr_2716 +0.5 2.7 Mandelate racemase/muconate lactonizing enzyme:Mandelate racemase/muconate lactonizing enzyme compare
Psyr_4474 +0.5 1.1 hypothetical protein compare
Psyr_2551 +0.5 2.1 acetylornithine aminotransferase apoenzyme compare
Psyr_1984 +0.5 2.0 3-isopropylmalate dehydratase, small subunit compare
Psyr_1458 +0.5 0.9 hypothetical protein compare
Psyr_0125 +0.5 2.1 conserved hypothetical protein compare
Psyr_4355 +0.5 1.7 hypothetical protein compare
Psyr_3548 +0.5 1.6 Glutathione S-transferase, N-terminal compare
Psyr_3181 +0.5 2.3 Arginyltransferase compare
Psyr_1138 +0.5 1.2 GCN5-related N-acetyltransferase compare
Psyr_0726 +0.5 2.2 ribosomal large subunit pseudouridine synthase D compare
Psyr_1882 +0.5 1.4 auxin-binding protein, putative compare
Psyr_1844 +0.5 1.8 conserved hypothetical protein compare
Psyr_2177 +0.5 2.5 probable sulfopyruvate decarboxylase compare
Psyr_0436 +0.5 1.6 Phosphopantetheine-binding protein compare
Psyr_4920 +0.5 1.2 conserved hypothetical bacteriophage protein compare
Psyr_4598 +0.5 1.2 lipoprotein, putative compare
Psyr_2256 +0.5 1.5 ABC transporter compare
Psyr_1810 +0.5 1.1 Transthyretin compare
Psyr_3604 +0.5 1.8 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region compare
Psyr_0633 +0.5 1.7 conserved hypothetical protein compare
Psyr_1236 +0.5 2.5 transcriptional regulator, BadM/Rrf2 family compare
Psyr_4490 +0.5 1.6 transcriptional regulator, DeoR family compare
Psyr_1783 +0.5 1.4 CDS compare
Psyr_3350 +0.5 1.0 Allergen V5/Tpx-1 related protein compare
Psyr_4856 +0.5 1.5 conserved hypothetical protein compare
Psyr_1868 +0.5 1.3 hypothetical protein compare
Psyr_3337 +0.5 1.1 gluconate kinase, SKI family compare
Psyr_0844 +0.5 0.9 Protein of unknown function DUF446 compare
Psyr_1689 +0.5 1.8 conserved hypothetical protein compare
Psyr_5072 +0.5 0.8 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_2199 +0.5 0.7 Urease accessory protein UreF compare
Psyr_0256 +0.5 2.0 Phenylacetic acid degradation-related protein compare
Psyr_1018 +0.5 1.6 Protein of unknown function DUF1244 compare
Psyr_1549 +0.5 2.7 lipoprotein, putative compare
Psyr_2717 +0.5 2.4 Antibiotic biosynthesis monooxygenase compare
Psyr_3727 +0.5 1.4 conserved hypothetical protein compare
Psyr_3397 +0.5 1.8 transcriptional regulator, LysR family compare
Psyr_1872 +0.5 1.8 conserved hypothetical protein compare
Psyr_2069 +0.5 1.3 conserved hypothetical protein compare
Psyr_3131 +0.5 2.0 Secretion protein HlyD compare
Psyr_3481 +0.5 2.0 Flagellar basal-body rod protein FlgB compare
Psyr_3050 +0.5 2.0 Aldo/keto reductase compare
Psyr_1273 +0.5 1.6 NUDIX hydrolase compare
Psyr_2543 +0.4 1.5 conserved hypothetical protein compare
Psyr_0051 +0.4 1.2 conserved hypothetical protein compare
Psyr_3138 +0.4 1.4 Major facilitator superfamily compare
Psyr_1295 +0.4 1.5 conserved domain protein compare
Psyr_4181 +0.4 1.2 Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication compare
Psyr_1722 +0.4 1.6 Amidohydrolase 2 compare
Psyr_2541 +0.4 2.1 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_1357 +0.4 0.7 RNase HII compare
Psyr_1511 +0.4 2.1 type II secretion system protein E compare
Psyr_3541 +0.4 2.2 Short-chain dehydrogenase/reductase SDR compare
Psyr_0895 +0.4 1.5 SpoVT/AbrB-like protein compare
Psyr_4596 +0.4 2.3 conserved hypothetical protein compare
Psyr_2268 +0.4 1.9 transcriptional regulator, LysR family compare
Psyr_2470 +0.4 2.4 isovaleryl-CoA dehydrogenase compare
Psyr_3051 +0.4 1.6 transcriptional regulator, LysR family compare
Psyr_2373 +0.4 2.1 L-arabinose ABC transporter membrane protein compare
Psyr_1103 +0.4 2.7 Protein of unknown function DUF454 compare
Psyr_3748 +0.4 2.7 GCN5-related N-acetyltransferase compare
Psyr_0248 +0.4 1.4 conserved hypothetical protein compare
Psyr_2132 +0.4 1.3 shikimate dehydrogenase compare
Psyr_4270 +0.4 1.3 serine hydroxymethyltransferase compare
Psyr_3058 +0.4 1.6 Amidase compare
Psyr_3315 +0.4 0.9 conserved hypothetical protein compare
Psyr_2318 +0.4 1.0 CDS compare
Psyr_3162 +0.4 1.0 Metalloprotease inhibitor/calysin compare
Psyr_2531 +0.4 1.2 transcriptional regulator, LysR family compare
Psyr_2550 +0.4 1.7 hypothetical protein compare
Psyr_1655 +0.4 2.9 TatD-related deoxyribonuclease compare
Psyr_4799 +0.4 2.2 Heavy metal sensor kinase compare
Psyr_2581 +0.4 1.4 FecR protein compare
Psyr_3830 +0.4 1.6 3-oxoacyl-[acyl-carrier protein] synthase compare
Psyr_2314 +0.4 2.0 pyruvate dehydrogenase (cytochrome) compare
Psyr_0825 +0.4 2.2 conserved hypothetical protein compare
Psyr_2032 +0.4 1.3 two component transcriptional regulator, winged helix family compare
Psyr_2553 +0.4 1.4 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases-related enzyme compare
Psyr_5029 +0.4 1.3 Rubredoxin-type Fe(Cys)4 protein compare
Psyr_1725 +0.4 1.6 Protein of unknown function DUF204 compare
Psyr_3250 +0.4 1.9 Helix-turn-helix motif protein compare
Psyr_3854 +0.4 1.1 OmpA/MotB compare
Psyr_2692 +0.4 2.0 Polysaccharide deacetylase compare
Psyr_4577 +0.4 1.9 Cyclic nucleotide-binding:Bacterial regulatory protein, Crp compare
Psyr_3394 +0.4 1.6 conserved hypothetical protein compare
Psyr_2487 +0.4 2.2 Short-chain dehydrogenase/reductase SDR compare
Psyr_4125 +0.4 1.1 Protein of unknown function DUF1043 compare
Psyr_1528 +0.4 0.8 Arc-like DNA binding protein compare
Psyr_0267 +0.4 1.6 Endonuclease/exonuclease/phosphatase compare
Psyr_3117 +0.4 1.7 lipoprotein, putative compare
Psyr_1598 +0.4 2.2 diguanylate cyclase/phosphodiesterase compare
Psyr_2619 +0.4 1.3 diaminobutyrate aminotransferase apoenzyme compare
Psyr_3040 +0.4 1.2 conserved hypothetical protein compare
Psyr_2193 +0.4 2.2 Secretion protein HlyD compare
Psyr_0373 +0.4 1.2 CDS compare
Psyr_2056 +0.4 1.2 CHAD compare
Psyr_2709 +0.4 2.5 Ferredoxin:Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region compare
Psyr_1106 +0.4 1.5 FecR protein compare
Psyr_0609 +0.4 2.1 Glutathione S-transferase, C-terminal compare
Psyr_2429 +0.4 1.5 conserved hypothetical protein compare
Psyr_4029 +0.4 1.9 pyruvate kinase compare
Psyr_0618 +0.4 2.4 conserved hypothetical protein compare
Psyr_2894 +0.4 0.9 conserved hypothetical protein compare
Psyr_0974 +0.4 2.4 amino acid ABC transporter substrate-binding protein, PAAT family compare
Psyr_3367 +0.4 1.2 Iron permease FTR1 compare
Psyr_1610 +0.4 1.7 ribosomal large subunit pseudouridine synthase A compare
Psyr_1707 +0.4 1.9 transcriptional regulator, GntR family compare
Psyr_3257 +0.4 1.5 multisubunit potassium/proton antiporter, PhaG subunit compare
Psyr_2121 +0.4 1.8 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_3338 +0.4 1.4 gluconate permease GntT compare
Psyr_2523 +0.4 2.4 DNA polymerase III, alpha subunit compare
Psyr_1786 +0.4 0.9 membrane protein, putative compare
Psyr_0782 +0.4 1.9 CheD compare
Psyr_2975 +0.4 1.6 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen compare
Psyr_1247 +0.4 1.2 conserved hypothetical protein compare
Psyr_3000 +0.4 0.5 methyltransferase, putative compare
Psyr_2782 +0.4 2.0 hypothetical protein compare
Psyr_4739 +0.4 2.0 tRNA (guanine-N(7)-)-methyltransferase compare
Psyr_3536 +0.4 1.4 hypothetical protein compare
Psyr_2357 +0.4 1.4 transcriptional regulator, LysR family compare
Psyr_3600 +0.4 0.8 transcriptional regulator, LysR family compare
Psyr_0036 +0.4 1.7 protein of unknown function DUF883 compare
Psyr_3946 +0.4 1.1 Proteobacterial methyltransferase compare
Psyr_4291 +0.4 1.6 hypothetical protein compare
Psyr_3540 +0.4 1.4 Zinc-containing alcohol dehydrogenase superfamily compare
Psyr_1566 +0.4 1.6 Nitroreductase compare
Psyr_0892 +0.4 1.9 Sigma-70 region 2:Sigma-70 region 4 compare
Psyr_4660 +0.4 1.1 Formate/nitrite transporter compare
Psyr_3374 +0.4 0.7 Heavy metal response regulator compare
Psyr_1097 +0.4 1.4 glycine cleavage system H protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a ΔmexB in stress experiments

For stress Gamma-Aminobutyric Acid Hydrochloride across organisms