Experiment set9IT028 for Pseudomonas putida KT2440
LB 0.1x with 55.5 mM D-Glucose
Group: dilutelbMedia: LB (0.1x) + D-Glucose (55.5 mM)
Culturing: Putida_ML5_JBEI, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=250 rpm
By: Robin Herbert on 7/11/18
Media components: 1 g/L Tryptone, 0.5 g/L Yeast Extract, 0.5 g/L Sodium Chloride (final concentrations)
Specific Phenotypes
For 14 genes in this experiment
For dilutelb D-Glucose in Pseudomonas putida KT2440
For dilutelb D-Glucose across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Oxidative stress | 3 |
| High affinity phosphate transporter and control of PHO regulon | 2 |
| Phosphate metabolism | 2 |
| ABC transporter alkylphosphonate (TC 3.A.1.9.1) | 1 |
| Purine conversions | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Fructose and mannose metabolism
- Purine metabolism
- N-Glycan biosynthesis
- O-Glycan biosynthesis
- High-mannose type N-glycan biosynthesis
- O-Mannosyl glycan biosynthesis
- Keratan sulfate biosynthesis
- Lipopolysaccharide biosynthesis
- Peptidoglycan biosynthesis
- Glycerolipid metabolism
- Glycosylphosphatidylinositol(GPI)-anchor biosynthesis
- Sphingolipid metabolism
- Glycosphingolipid biosynthesis - lacto and neolacto series
- Glycosphingolipid biosynthesis - globo series
- Glycosphingolipid biosynthesis - ganglio series
- Carotenoid biosynthesis - General
- Zeatin biosynthesis
- Flavonoid biosynthesis
- Anthocyanin biosynthesis
- Flavone and flavonol biosynthesis
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| adenosine nucleotides degradation III | 1 | 1 | 1 |