Experiment set9IT027 for Pseudomonas putida KT2440

Compare to:

LB 0.1x with 55.5 mM D-Glucose

200 most important genes:

  gene name fitness t score description  
PP_5145 -3.6 -25.8 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4779 -2.9 -15.0 AMP nucleosidase compare
PP_0809 -2.9 -8.3 disulfide bond formation protein B compare
PP_4700 -2.8 -2.7 pantothenate synthetase compare
PP_4909 -2.2 -6.2 phosphoserine phosphatase compare
PP_4937 -2.1 -4.4 toluene tolerance protein compare
PP_5320 -2.0 -7.4 two-component system DNA-binding transcriptional dual response regulator PhoB compare
PP_1623 -1.9 -9.2 RNA polymerase, sigma S (sigma 38) factor compare
PP_5095 -1.9 -2.0 pyrroline-5-carboxylate reductase compare
PP_0513 -1.7 -2.3 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_2087 -1.6 -2.0 CmpX protein compare
PP_0948 -1.6 -2.9 Phosphocarrier protein HPr compare
PP_2748 -1.6 -3.6 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_t29 -1.6 -1.8 tRNA-Ala compare
PP_5139 -1.6 -4.5 cadmium translocating P-type ATPase compare
PP_4532 -1.6 -2.1 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2306 -1.5 -1.7 conserved exported protein of unknown function compare
PP_5077 -1.5 -7.4 conserved protein of unknown function compare
PP_1055 -1.5 -1.6 Type II secretion pathway protein GspN compare
PP_4994 -1.5 -3.5 conserved protein of unknown function compare
PP_1214 -1.4 -1.5 putative transcriptional regulatory protein compare
PP_0949 -1.4 -5.1 putative ATP-binding protein UPF0042 compare
PP_5445 -1.4 -3.2 conserved protein of unknown function compare
PP_4593 -1.4 -1.5 conserved protein of unknown function compare
PP_2631 -1.4 -2.2 putative cellulose biosynthesis, BcsF/YhjT compare
PP_1128 -1.4 -3.6 OmpA family protein compare
PP_0959 -1.4 -2.4 phospholipid ABC transporter compare
PP_1568 -1.4 -1.6 conserved protein of unknown function compare
PP_1176 -1.3 -1.8 conserved protein of unknown function compare
PP_0599 -1.3 -9.1 paraquat-inducible protein B compare
PP_2899 -1.3 -2.1 conserved exported protein of unknown function compare
PP_4724 -1.3 -0.9 Carbamoyl-phosphate synthase small chain compare
PP_5600 -1.3 -3.1 conserved protein of unknown function compare
PP_1198 -1.3 -2.7 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0846 -1.3 -1.3 DnaK-like molecular chaperone specific for IscU compare
PP_4828 -1.3 -1.5 Precorrin-8X methylmutase compare
PP_0978 -1.2 -2.1 conserved protein of unknown function compare
PP_5008 -1.2 -1.5 Poly granule-associated protein compare
PP_1663 -1.2 -5.5 conserved exported protein of unknown function compare
PP_2163 -1.2 -5.0 VacJ lipoprotein compare
PP_0643 -1.2 -1.8 protein of unknown function compare
PP_0753 -1.1 -4.7 putative Lipoprotein compare
PP_3102 -1.1 -3.9 conserved protein of unknown function compare
PP_1979 -1.1 -2.7 putative Hydrolase compare
PP_0958 -1.1 -3.8 phospholipid ABC transporter ATP-binding subunit compare
PP_0598 -1.1 -7.1 paraquat-inducible protein A compare
PP_5745 -1.1 -5.1 paraquat-inducible protein A compare
PP_5748 -1.1 -2.3 cytochrome c heme lyase subunit compare
PP_4819 -1.1 -4.8 conserved protein of unknown function compare
PP_5321 -1.1 -4.0 two-component system sensory histidine kinase compare
PP_2090 -1.1 -2.6 Uroporphyrinogen-III C-methyltransferase compare
PP_4577 -1.1 -5.2 UPF0271 protein PP_4577 compare
PP_3505 -1.0 -1.7 conserved protein of unknown function compare
PP_3449 -1.0 -2.6 conserved exported protein of unknown function compare
PP_0127 -1.0 -1.6 Thiol:disulfide interchange protein compare
PP_0293 -1.0 -1.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2299 -1.0 -2.5 Trigger factor compare
PP_0377 -1.0 -0.9 coenzyme PQQ synthesis protein D compare
PP_2253 -1.0 -2.4 Transcriptional regulator, GntR family compare
PP_1322 -1.0 -1.0 putative Lipoprotein compare
PP_1553 -1.0 -1.3 conserved protein of unknown function compare
PP_1731 -1.0 -3.0 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_5140 -1.0 -2.2 Transcriptional regulator, MerR family compare
PP_2433 -0.9 -2.7 conserved protein of unknown function compare
PP_2307 -0.9 -2.8 conserved protein of unknown function compare
PP_4342 -0.9 -2.1 flagellar synthesis regulator, putative ATPase compare
PP_1860 -0.9 -4.4 Organic hydroperoxide resistance transcriptional regulator compare
PP_2668 -0.9 -2.4 ABC efflux transporter, ATP-binding protein compare
PP_1293 -0.9 -1.8 molybdopterin synthase small subunit compare
PP_5331 -0.9 -3.8 Long-chain acyl-CoA thioester hydrolase compare
PP_1677 -0.9 -3.0 Adenosyl-cobyric acid synthase compare
PP_1390 -0.9 -2.9 conserved exported protein of unknown function compare
PP_0961 -0.9 -3.5 toluene tolerance protein compare
PP_1201 -0.9 -4.2 conserved exported protein of unknown function compare
PP_2088 -0.9 -1.9 RNA polymerase sigma factor SigX compare
PP_4254 -0.9 -1.2 conserved protein of unknown function compare
PP_0872 -0.9 -3.4 Peptide chain release factor 3 compare
PP_2498 -0.9 -3.4 conserved protein of unknown function compare
PP_1224 -0.9 -3.2 periplasmic subunit of the TolQRA transport system compare
PP_0691 -0.9 -1.4 Glutamate 5-kinase compare
PP_2976 -0.9 -1.1 putative transposase compare
PP_2313 -0.8 -1.2 conserved membrane protein of unknown function compare
PP_5217 -0.8 -6.8 Polyphosphate kinase compare
PP_1999 -0.8 -1.9 membrane protein required for colicin V production compare
PP_0236 -0.8 -1.3 NAD(P)H-dependent FMN reductase subunit compare
PP_2341 -0.8 -1.4 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_1206 -0.8 -3.9 basic-amino-acid specific porin OprD compare
PP_0960 -0.8 -3.0 phospholipid ABC transporter binding protein compare
PP_1142 -0.8 -0.6 conserved protein of unknown function compare
PP_1985 -0.8 -2.9 3-isopropylmalate dehydratase large subunit compare
PP_3487 -0.8 -2.8 conserved exported protein of unknown function compare
PP_2740 -0.8 -1.1 Transcriptional regulator, MerR family compare
PP_4818 -0.8 -2.7 ribosomal protein L11 methyltransferase compare
PP_4211 -0.8 -3.7 outer membrane pyoverdine efflux protein compare
PP_4477 -0.8 -3.2 N-succinylarginine dihydrolase compare
PP_4329 -0.8 -2.4 FlhB domain protein compare
PP_0152 -0.8 -1.4 conserved exported protein of unknown function compare
PP_4058 -0.8 -2.6 1,4-alpha-glucan branching enzyme compare
PP_5253 -0.8 -2.3 Arylesterase compare
PP_4266 -0.8 -2.3 Adenine phosphoribosyltransferase compare
PP_5185 -0.8 -2.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_t10 -0.8 -1.2 tRNA-Pro compare
PP_4471 -0.7 -1.9 Magnesium transporter compare
PP_0719 -0.7 -0.5 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0775 -0.7 -1.0 conserved protein of unknown function compare
PP_3899 -0.7 -2.2 conserved protein of unknown function, hicB family compare
PP_5350 -0.7 -1.6 Transcriptional regulator, RpiR family compare
PP_5000 -0.7 -0.6 peptidase component of the ATP-dependent HslVU protease compare
PP_3880 -0.7 -0.8 conserved exported protein of unknown function compare
PP_0855 -0.7 -1.4 conserved protein of unknown function compare
PP_2345 -0.7 -2.1 conserved exported protein of unknown function compare
PP_4520 -0.7 -2.9 conserved protein of unknown function compare
PP_1239 -0.7 -2.4 Metallo-beta-lactamase family protein compare
PP_0184 -0.7 -2.5 Argininosuccinate lyase compare
PP_3398 -0.7 -1.3 putative Curli fiber surface-exposed nucleator CsgB compare
PP_5170 -0.7 -2.7 sulfate ABC transporter, inner membrane subunit CysT compare
PP_0962 -0.7 -1.1 toluene-tolerance protein compare
PP_3660 -0.7 -3.3 Transcriptional regulator, LysR family compare
PP_1620 -0.7 -4.1 5'(3')-nucleotidase and polyphosphatase compare
PP_5289 -0.7 -1.9 Acetylglutamate kinase compare
PP_0850 -0.7 -3.3 Dual-specificity RNA methyltransferase RlmN compare
PP_3738 -0.7 -1.7 putative Transcriptional regulator VanR compare
PP_1208 -0.7 -1.2 conserved protein of unknown function, SlyX family compare
PP_4108 -0.7 -3.0 2-aminoadipate transaminase (EC 2.6.1.39) (from data) compare
PP_0410 -0.7 -3.3 DNA-binding response regulator UhpA compare
PP_5717 -0.7 -1.6 conserved protein of unknown function compare
PP_4983 -0.7 -3.2 putative amine oxidase compare
PP_1738 -0.7 -4.3 conserved exported protein of unknown function compare
PP_4576 -0.7 -3.7 allophanate hydrolase subunit compare
PP_0276 -0.7 -0.8 Transcriptional regulator, Cro/CI family compare
PP_5359 -0.7 -1.3 CobW/P47K family protein compare
PP_0214 -0.7 -2.3 4-aminobutyrate aminotransferase compare
PP_1609 -0.7 -1.0 conserved protein of unknown function compare
PP_4679 -0.7 -2.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2404 -0.7 -2.0 conserved exported protein of unknown function compare
PP_1068 -0.7 -1.9 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_5354 -0.6 -3.7 conserved protein of unknown function compare
PP_4470 -0.6 -1.8 putative transcriptional regulator (Arc domain-containing) compare
PP_2931 -0.6 -1.7 conserved protein of unknown function compare
PP_1088 -0.6 -3.8 Argininosuccinate synthase compare
PP_2547 -0.6 -2.4 Transcriptional regulator, LysR family compare
PP_4769 -0.6 -1.4 conserved protein of unknown function compare
PP_2079 -0.6 -2.8 conserved protein of unknown function compare
PP_2475 -0.6 -2.0 Transcriptional regulator, TetR family compare
PP_5661 -0.6 -2.3 putative lipoprotein compare
PP_4699 -0.6 -1.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1692 -0.6 -1.9 conserved protein of unknown function compare
PP_3850 -0.6 -1.9 conserved protein of unknown function compare
PP_1836 -0.6 -1.6 putative metal transporter, ZIP family compare
PP_4308 -0.6 -2.1 Transcriptional regulator, AsnC family compare
PP_5121 -0.6 -2.2 conserved exported protein of unknown function compare
PP_0439 -0.6 -2.1 conserved protein of unknown function compare
PP_2159 -0.6 -1.7 Copper-binding protein, plastocyanin/azurin family compare
PP_4362 -0.6 -1.3 conserved protein of unknown function compare
PP_3043 -0.6 -1.7 conserved protein of unknown function compare
PP_0547 -0.6 -1.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4555 -0.6 -1.1 conserved protein of unknown function compare
PP_2260 -0.6 -2.0 putative glycerol-phosphate ABC transporter, ATP-binding protein compare
PP_3048 -0.6 -1.6 conserved protein of unknown function compare
PP_3753 -0.6 -3.2 Transcriptional regulator, AraC family compare
PP_3290 -0.6 -3.6 Universal stress protein family compare
PP_1935 -0.6 -1.1 Transcriptional regulator, Cro/CI family compare
PP_3098 -0.6 -1.0 conserved protein of unknown function compare
PP_5229 -0.6 -1.8 conserved protein of unknown function compare
PP_3563 -0.6 -1.6 conserved exported protein of unknown function compare
PP_1045 -0.6 -0.9 Type II secretion pathway protein XcpP compare
PP_2908 -0.6 -1.9 DNA-binding transcriptional repressor compare
PP_5274 -0.6 -1.1 conserved protein of unknown function compare
PP_4701 -0.6 -0.7 glucose-6-phosphate isomerase compare
PP_2044 -0.6 -0.8 conserved inner membrane protein of unknown function compare
PP_5155 -0.6 -2.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4826 -0.6 -2.4 Precorrin-3B C17-methyltransferase compare
PP_2511 -0.6 -1.1 conserved protein of unknown function compare
PP_0319 -0.6 -0.7 conserved protein of unknown function compare
PP_1854 -0.6 -3.4 conserved protein of unknown function compare
PP_4580 -0.6 -2.2 conserved protein of unknown function compare
PP_2219 -0.6 -2.0 conserved protein of unknown function compare
PP_2765 -0.6 -1.7 putative Sulfonate monooxygenase MsuD compare
PP_5687 -0.6 -2.0 putative permease of the major facilitator superfamily compare
PP_4069 -0.6 -1.5 conserved protein of unknown function compare
PP_5063 -0.6 -2.3 betaine aldehyde dehydrogenase, NAD-dependent compare
PP_4159 -0.6 -1.6 Potassium-transporting ATPase C chain compare
PP_2347 -0.6 -1.8 DNA-binding response regulator compare
PP_4785 -0.6 -3.2 conserved exported protein of unknown function compare
PP_5594 -0.6 -1.7 conserved protein of unknown function compare
PP_1054 -0.6 -1.1 Type II secretion pathway protein XcpZ compare
PP_5191 -0.6 -1.6 conserved exported protein of unknown function compare
PP_5638 -0.6 -1.9 conserved protein of unknown function compare
PP_4971 -0.6 -4.0 putative Outer membrane-bound lytic murein transglycolase A compare
PP_1185 -0.6 -1.7 Outer membrane protein H1 compare
PP_0951 -0.6 -2.4 Ribosome hibernation promoting factor compare
PP_3121 -0.6 -1.1 transcriptional regulator, LysR family compare
PP_1074 -0.6 -1.1 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_3802 -0.6 -2.1 putative Cation ABC transporter, ATP-binding protein compare
PP_2462 -0.6 -1.3 conserved protein of unknown function compare
PP_1022 -0.6 -1.5 glucose 6-phosphate-1-dehydrogenase compare
PP_5548 -0.6 -1.6 protein of unknown function compare
PP_3506 -0.5 -1.2 Magnesium chelatase, subunit ChII compare
PP_2334 -0.5 -2.1 2-methylisocitrate lyase compare
PP_5346 -0.5 -3.1 pyruvate carboxylase subunit B compare


Specific Phenotypes

For 7 genes in this experiment

For dilutelb D-Glucose in Pseudomonas putida KT2440

For dilutelb D-Glucose across organisms