Experiment set9IT027 for Escherichia coli BW25113
LB Anaerobic with Cefoxitin sodium salt 0.000003125 mM
Group: stressMedia: LB + Cefoxitin sodium salt (3.13E-03 mM)
Culturing: Keio_ML9a, 96 deep-well microplate; Multitron, Anaerobic, at 37 (C), shaken=0 rpm
By: Hans_Hualan on 7/20/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 10 genes in this experiment
For stress Cefoxitin sodium salt in Escherichia coli BW25113
For stress Cefoxitin sodium salt across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| D-Tagatose and Galactitol Utilization | 2 |
| Peptidyl-prolyl cis-trans isomerase | 1 |
| Potassium homeostasis | 1 |
| Predicted carbohydrate hydrolases | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Galactose metabolism
- Ascorbate and aldarate metabolism
- Nucleotide sugars metabolism
- Glycolysis / Gluconeogenesis
- Fructose and mannose metabolism
- Ubiquinone and menaquinone biosynthesis
- Starch and sucrose metabolism
- Aminosugars metabolism
- Glycosaminoglycan degradation
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| galactitol degradation | 5 | 5 | 3 |
| D-galactosamine and N-acetyl-D-galactosamine degradation | 4 | 4 | 2 |
| N-acetyl-D-galactosamine degradation | 5 | 4 | 2 |
| lactose degradation I | 5 | 2 | 2 |
| D-tagatose degradation | 3 | 1 | 1 |
| peptidoglycan recycling II | 10 | 7 | 2 |
| superpathway of hexitol degradation (bacteria) | 18 | 18 | 3 |
| peptidoglycan recycling I | 14 | 14 | 2 |
| peptidoglycan maturation (meso-diaminopimelate containing) | 12 | 6 | 1 |