Experiment set9IT025 for Pseudomonas putida KT2440

Compare to:

72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay

200 most important genes:

  gene name fitness t score description  
PP_1269 -2.5 -2.2 Universal stress protein family compare
PP_5145 -1.9 -18.0 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0630 -1.9 -1.0 DNA gyrase inhibitor YacG compare
PP_3880 -1.7 -1.8 conserved exported protein of unknown function compare
PP_3098 -1.7 -1.7 conserved protein of unknown function compare
PP_3926 -1.7 -1.5 short-chain dehydrogenase compare
PP_1568 -1.6 -1.6 conserved protein of unknown function compare
PP_1678 -1.5 -2.2 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4813 -1.5 -6.1 PAP2 family protein/DedA family protein compare
PP_0025 -1.5 -1.6 hypothetical protein compare
PP_3035 -1.5 -1.6 conserved protein of unknown function compare
PP_5295 -1.4 -1.9 conserved protein of unknown function compare
PP_5225 -1.4 -1.2 frataxin compare
PP_0250 -1.4 -2.2 heat shock protein Hsp15 involved in ribosome recycling compare
PP_5348 -1.3 -3.1 Transcriptional regulator, LysR family compare
PP_4593 -1.3 -0.9 conserved protein of unknown function compare
PP_1110 -1.3 -1.2 serine acetyltransferase compare
PP_1813 -1.3 -2.4 ComEA-related protein compare
PP_5017 -1.3 -0.6 Sec-independent protein translocase protein TatB compare
PP_2307 -1.2 -1.9 conserved protein of unknown function compare
PP_0195 -1.2 -1.6 conserved protein of unknown function compare
PP_t10 -1.2 -1.1 tRNA-Pro compare
PP_5232 -1.2 -2.4 conserved protein of unknown function compare
PP_4642 -1.1 -0.6 Cyclic diguanosine monophosphate-binding protein compare
PP_4581 -1.1 -1.9 putative amidotransferase compare
PP_1536 -1.1 -1.4 conserved protein of unknown function compare
PP_1109 -1.1 -4.6 Transcriptional regulator, GntR family compare
PP_5483 -1.0 -1.0 conserved protein of unknown function compare
PP_3505 -1.0 -1.1 conserved protein of unknown function compare
PP_1096 -1.0 -1.5 putative electron transport complex protein compare
PP_4837 -1.0 -1.8 conserved protein of unknown function compare
PP_3121 -1.0 -1.8 transcriptional regulator, LysR family compare
PP_4133 -1.0 -1.9 Transcriptional regulator-related protein compare
PP_5083 -1.0 -2.4 putative Type IV pili biogenesis protein PilM compare
PP_5707 -1.0 -2.3 conserved protein of unknown function compare
PP_5274 -1.0 -1.2 conserved protein of unknown function compare
PP_4966 -1.0 -1.7 transcriptional regulator of methionine metabolism compare
PP_1051 -1.0 -2.5 Type II secretion pathway protein XcpV compare
PP_5100 -1.0 -1.9 dITP/XTP pyrophosphatase compare
PP_3318 -1.0 -1.5 conserved protein of unknown function compare
PP_3810 -1.0 -1.7 conserved protein of unknown function compare
PP_0361 -1.0 -2.4 putative Competence protein ComF compare
PP_0152 -0.9 -1.5 conserved exported protein of unknown function compare
PP_2580 -0.9 -1.7 conserved protein of unknown function compare
PP_5552 -0.9 -1.0 conserved protein of unknown function compare
PP_4273 -0.9 -1.2 Transcriptional regulator, MerR family compare
PP_1553 -0.9 -1.3 conserved protein of unknown function compare
PP_0117 -0.9 -2.6 Zn(2+) ABC transporter - permease subunit compare
PP_0260 -0.9 -3.2 ADP-sugar pyrophosphorylase compare
PP_5176 -0.9 -1.7 conserved protein of unknown function compare
PP_5156 -0.9 -2.5 conserved exported protein of unknown function compare
PP_5533 -0.9 -0.9 conserved protein of unknown function compare
PP_4094 -0.9 -1.7 conserved protein of unknown function compare
PP_0668 -0.9 -3.0 putative Transmembrane sensor compare
PP_0948 -0.9 -3.2 Phosphocarrier protein HPr compare
PP_3243 -0.9 -2.1 Acetyltransferase, GNAT family compare
PP_5608 -0.8 -2.4 putative exported protein compare
PP_3333 -0.8 -1.7 conserved protein of unknown function compare
PP_1309 -0.8 -3.2 conserved exported protein of unknown function compare
PP_5110 -0.8 -1.2 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_5579 -0.8 -2.7 conserved protein of unknown function compare
PP_3474 -0.8 -2.4 putative Curli fiber protein CsgE compare
PP_t49 -0.8 -2.8 tRNA-Met compare
PP_3787 -0.8 -3.5 conserved protein of unknown function compare
PP_2896 -0.8 -2.6 conserved protein of unknown function compare
PP_4850 -0.8 -2.4 conserved membrane protein of unknown function compare
PP_4010 -0.8 -2.4 DNA replication inhibitor compare
PP_0512 -0.8 -1.5 hypothetical protein compare
PP_2137 -0.8 -1.3 beta-ketoadipyl CoA thiolase, beta component compare
PP_5640 -0.8 -1.8 conserved protein of unknown function compare
PP_1430 -0.8 -2.7 putative periplasmic serine endoprotease DegP-like compare
PP_5600 -0.8 -1.4 conserved protein of unknown function compare
PP_3956 -0.7 -2.7 conserved protein of unknown function compare
PP_4829 -0.7 -1.0 putative precorrin-3B synthase compare
PP_3241 -0.7 -0.4 conserved exported protein of unknown function compare
PP_0945 -0.7 -1.9 conserved protein of unknown function compare
PP_1328 -0.7 -0.9 Protein MraZ compare
PP_5675 -0.7 -1.6 conserved protein of unknown function compare
PP_2878 -0.7 -1.1 conserved protein of unknown function compare
PP_2740 -0.7 -1.3 Transcriptional regulator, MerR family compare
PP_3506 -0.7 -1.4 Magnesium chelatase, subunit ChII compare
PP_3929 -0.7 -1.8 conserved protein of unknown function compare
PP_4930 -0.7 -2.0 putative small multidrug resistance protein compare
PP_3908 -0.7 -1.6 conserved protein of unknown function compare
PP_t64 -0.7 -1.8 tRNA-Gly compare
PP_5721 -0.7 -3.1 conserved protein of unknown function compare
PP_4336 -0.7 -2.3 flagellar motor rotation protein compare
PP_0585 -0.7 -1.5 putative metal-sensitive transcriptional regulator, MerR family compare
PP_1322 -0.7 -0.4 putative Lipoprotein compare
PP_0992 -0.7 -2.8 conserved protein of unknown function, UPF0276 family compare
PP_0919 -0.7 -1.5 conserved protein of unknown function compare
PP_2884 -0.7 -2.4 XRE family transcriptional regulator compare
PP_2054 -0.7 -1.5 putative DNA-binding transcriptional regulator compare
PP_4512 -0.7 -2.2 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_2474 -0.7 -1.4 Glutathione S-transferase family protein compare
PP_5465 -0.7 -2.7 conserved protein of unknown function compare
PP_5339 -0.7 -1.6 transcriptional regulator, ornithine utilization compare
PP_3748 -0.7 -1.6 conserved hypothetical protein compare
PP_1907 -0.7 -2.5 Hydrolase, haloacid dehalogenase-like family compare
PP_4069 -0.7 -1.5 conserved protein of unknown function compare
PP_1008 -0.7 -0.8 RNA polymerase subunit sigma-24 compare
PP_2125 -0.7 -2.3 lipid kinase compare
PP_1020 -0.7 -1.4 putative glucose-6-phosphate 1-epimerase compare
PP_2506 -0.7 -2.2 conserved membrane protein of unknown function compare
PP_3447 -0.7 -0.7 conserved membrane protein of unknown function compare
PP_5022 -0.7 -1.0 Glutamine transport ATP-binding protein GlnQ compare
PP_1824 -0.7 -0.6 Smr domain protein compare
PP_2903 -0.7 -0.7 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1605 -0.7 -1.4 Ribonuclease HII compare
PP_1836 -0.7 -1.1 putative metal transporter, ZIP family compare
PP_4355 -0.7 -1.0 flagellar export apparatus subunit compare
PP_0319 -0.7 -0.9 conserved protein of unknown function compare
PP_2749 -0.7 -1.9 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_1632 -0.7 -0.9 conserved protein of unknown function compare
PP_2480 -0.7 -2.8 putative Xanthine dehydrogenase accessory factor compare
PP_0303 -0.7 -1.3 dehydrocarnitine cleavage enzyme compare
PP_2403 -0.7 -1.0 Chemotaxis protein CheY compare
PP_5076 -0.6 -2.0 L-glutamate synthase(NADPH) alpha subunit compare
PP_4364 -0.6 -2.4 putative Anti-sigma F factor antagonist compare
PP_4541 -0.6 -2.0 peptidyl-prolyl cis-trans isomerase A (rotamase A) compare
PP_2429 -0.6 -0.4 putative Membrane protein compare
PP_4531 -0.6 -1.4 conserved exported protein of unknown function compare
PP_2764 -0.6 -1.7 FMN reductase (NADPH) compare
PP_0366 -0.6 -2.6 dethiobiotin synthetase compare
PP_2747 -0.6 -0.8 conserved protein of unknown function compare
PP_1834 -0.6 -1.5 conserved protein of unknown function compare
PP_3685 -0.6 -1.7 conserved protein of unknown function compare
PP_3197 -0.6 -1.4 Glyoxalase family protein compare
PP_0307 -0.6 -0.6 conserved exported protein of unknown function compare
PP_4308 -0.6 -1.5 Transcriptional regulator, AsnC family compare
PP_4394 -0.6 -2.1 flagella basal body P-ring formation protein compare
PP_4109 -0.6 -1.0 conserved protein of unknown function compare
PP_3471 -0.6 -1.4 conserved protein of unknown function compare
PP_2177 -0.6 -1.7 putative transcriptional regulator compare
PP_1562 -0.6 -1.1 putative Phage terminase, small subunit compare
PP_1374 -0.6 -1.5 conserved protein of unknown function compare
PP_5476 -0.6 -2.4 conserved protein of unknown function compare
PP_1138 -0.6 -1.3 branched chain amino acid transporter - ATP binding subunit compare
PP_4995 -0.6 -2.4 putative protein possibly involved in the control of exopolysaccharide production compare
PP_3738 -0.6 -1.2 putative Transcriptional regulator VanR compare
PP_5321 -0.6 -2.6 two-component system sensory histidine kinase compare
PP_4502 -0.6 -1.3 putative enzyme compare
PP_1063 -0.6 -2.5 DNA-binding transcriptional regulator, homocysteine-binding compare
PP_0790 -0.6 -2.6 Inner membrane protein AmpE compare
PP_4317 -0.6 -1.3 conserved protein of unknown function compare
PP_3487 -0.6 -1.3 conserved exported protein of unknown function compare
PP_0824 -0.6 -2.0 phosphonate transport system-binding protein compare
PP_0434 -0.6 -3.1 Anhydro-N-acetylmuramic acid kinase compare
PP_3094 -0.6 -1.6 conserved exported protein of unknown function compare
PP_5440 -0.6 -2.2 conserved protein of unknown function compare
PP_3238 -0.6 -1.7 putative Transcriptional regulator PyrR compare
PP_3198 -0.6 -1.1 Ferredoxin, 2Fe-2S compare
PP_3034 -0.6 -1.0 putative Regulator protein compare
PP_5265 -0.6 -2.0 Xanthine phosphoribosyltransferase compare
PP_1714 -0.6 -2.1 FKBP-type peptidyl-prolyl cis-trans isomerase compare
PP_1566 -0.6 -2.1 Peptidase U35 compare
PP_1074 -0.6 -1.1 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_1679 -0.6 -0.7 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_0185 -0.6 -3.3 Positive alginate biosynthesis regulatory protein compare
PP_0653 -0.6 -0.7 conserved protein of unknown function compare
PP_5645 -0.6 -2.2 conserved protein of unknown function compare
PP_1862 -0.6 -1.4 conserved membrane protein of unknown function compare
PP_4647 -0.6 -2.3 transcriptional regulator, LuxR family compare
PP_0760 -0.6 -1.6 conserved membrane protein of unknown function compare
PP_1372 -0.6 -2.0 conserved protein of unknown function compare
PP_2622 -0.5 -1.3 conserved protein of unknown function compare
PP_3341 -0.5 -1.3 nickel-responsive regulator compare
PP_3763 -0.5 -1.8 putative CobF protein compare
PP_3280 -0.5 -1.5 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase compare
PP_0566 -0.5 -0.8 translation-related factor compare
PP_1084 -0.5 -1.8 putative peroxiredoxin compare
PP_0236 -0.5 -0.7 NAD(P)H-dependent FMN reductase subunit compare
PP_4636 -0.5 -1.9 acetyl-CoA acetyltransferase compare
PP_0633 -0.5 -1.5 Type 4 fimbrial assembly protein PilC compare
PP_1303 -0.5 -1.3 Sulfate adenylyltransferase subunit 2 compare
PP_4013 -0.5 -1.5 MutT/nudix family protein compare
PP_5437 -0.5 -1.8 protein of unknown function compare
PP_5190 -0.5 -2.0 Type II secretion system protein compare
PP_4580 -0.5 -1.9 conserved protein of unknown function compare
PP_4504 -0.5 -0.8 conserved exported protein of unknown function compare
PP_1026 -0.5 -1.3 Peptidase, M23/M37 family compare
PP_3156 -0.5 -1.9 Universal stress protein family compare
PP_3941 -0.5 -1.7 maleamate amidohydrolase compare
PP_2014 -0.5 -2.1 conserved membrane protein of unknown function compare
PP_3374 -0.5 -1.5 conserved protein of unknown function compare
PP_1094 -0.5 -2.2 putative electron transport complex protein compare
PP_4386 -0.5 -1.6 flagellar basal-body rod protein FlgF compare
PP_0999 -0.5 -1.5 carbamate kinase compare
PP_2003 -0.5 -1.5 conserved protein of unknown function compare
PP_4922 -0.5 -1.0 Phosphomethylpyrimidine synthase compare
PP_0542 -0.5 -1.8 ethanolamine ammonia-lyase, beta-subunit compare
PP_1713 -0.5 -0.8 Transcriptional regulator PcaQ compare
PP_2326 -0.5 -2.0 Universal stress protein compare
PP_3668 -0.5 -2.6 Catalase-peroxidase compare
PP_0051 -0.5 -2.2 putative sigma-54 dependent transcriptional regulator compare
PP_2023 -0.5 -1.6 Glutathione S-transferase family protein compare
PP_2568 -0.5 -0.5 Ring-cleaving dioxygenase compare
PP_4997 -0.5 -0.9 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_1256 -0.5 -2.0 putative alpha-ketoglutarate semialdehyde dehydrogenase compare
PP_5701 -0.5 -0.9 conserved protein of unknown function compare


Specific Phenotypes

For 2 genes in this experiment