Experiment set9IT020 for Pseudomonas putida KT2440

Compare to:

24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay

200 most important genes:

  gene name fitness t score description  
PP_4701 -2.8 -1.5 glucose-6-phosphate isomerase compare
PP_5145 -2.4 -22.2 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_3880 -2.0 -2.2 conserved exported protein of unknown function compare
PP_5423 -2.0 -2.8 conserved membrane protein of unknown function compare
PP_0948 -1.9 -5.9 Phosphocarrier protein HPr compare
PP_1109 -1.8 -6.8 Transcriptional regulator, GntR family compare
PP_5267 -1.8 -1.2 putative cytochrome c5 compare
PP_3105 -1.8 -1.9 conserved membrane protein of unknown function compare
PP_4940 -1.7 -3.7 Putative glycosyltransferase compare
PP_5017 -1.7 -0.9 Sec-independent protein translocase protein TatB compare
PP_5348 -1.6 -4.4 Transcriptional regulator, LysR family compare
PP_4871 -1.6 -3.3 putative lysine decarboxylase family protein compare
PP_1142 -1.6 -0.8 conserved protein of unknown function compare
PP_5295 -1.6 -2.5 conserved protein of unknown function compare
PP_3052 -1.6 -1.8 conserved protein of unknown function compare
PP_0127 -1.5 -2.4 Thiol:disulfide interchange protein compare
PP_5076 -1.4 -4.1 L-glutamate synthase(NADPH) alpha subunit compare
PP_2390 -1.3 -2.3 Transcriptional regulator, LysR family compare
PP_5505 -1.3 -2.5 conserved transmembrane protein of unknown function compare
PP_5110 -1.3 -1.8 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_3926 -1.3 -1.6 short-chain dehydrogenase compare
PP_3730 -1.3 -1.8 Transcriptional regulatory protein AruR compare
PP_3241 -1.2 -0.6 conserved exported protein of unknown function compare
PP_3204 -1.2 -2.7 conserved protein of unknown function compare
PP_2668 -1.2 -1.6 ABC efflux transporter, ATP-binding protein compare
PP_5597 -1.2 -2.6 conserved protein of unknown function compare
PP_4470 -1.2 -2.5 putative transcriptional regulator (Arc domain-containing) compare
PP_4922 -1.2 -2.4 Phosphomethylpyrimidine synthase compare
PP_1309 -1.2 -5.2 conserved exported protein of unknown function compare
PP_4997 -1.2 -1.8 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_0232 -1.2 -1.2 ATP-binding taurine transporter subunit compare
PP_0685 -1.1 -1.4 conserved protein of unknown function compare
PP_5008 -1.1 -1.7 Poly granule-associated protein compare
PP_3245 -1.1 -1.7 conserved protein of unknown function compare
PP_1568 -1.1 -1.5 conserved protein of unknown function compare
PP_t10 -1.1 -1.2 tRNA-Pro compare
PP_4196 -1.1 -1.6 conserved exported protein of unknown function compare
PP_0362 -1.1 -4.3 Biotin synthase compare
PP_5465 -1.1 -4.2 conserved protein of unknown function compare
PP_2999 -1.0 -1.4 Glyoxalase family protein compare
PP_2764 -1.0 -2.1 FMN reductase (NADPH) compare
PP_5594 -1.0 -2.1 conserved protein of unknown function compare
PP_4813 -1.0 -5.4 PAP2 family protein/DedA family protein compare
PP_5701 -1.0 -1.1 conserved protein of unknown function compare
PP_1679 -1.0 -1.4 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1111 -1.0 -1.2 putative Synthetase compare
PP_2899 -1.0 -1.4 conserved exported protein of unknown function compare
PP_3258 -1.0 -1.8 conserved protein of unknown function compare
PP_4707 -1.0 -2.3 OsmY-related protein compare
PP_5225 -1.0 -1.1 frataxin compare
PP_4364 -1.0 -4.5 putative Anti-sigma F factor antagonist compare
PP_1110 -1.0 -1.3 serine acetyltransferase compare
PP_3320 -1.0 -2.4 conserved protein of unknown function compare
PP_4387 -1.0 -1.6 conserved exported protein of unknown function compare
PP_4837 -0.9 -1.7 conserved protein of unknown function compare
PP_1348 -0.9 -2.0 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_5598 -0.9 -2.3 conserved protein of unknown function compare
PP_3506 -0.9 -1.9 Magnesium chelatase, subunit ChII compare
PP_2121 -0.9 -1.0 putative Lipoprotein compare
PP_1176 -0.9 -0.9 conserved protein of unknown function compare
PP_0195 -0.9 -1.5 conserved protein of unknown function compare
PP_3094 -0.9 -2.2 conserved exported protein of unknown function compare
PP_3840 -0.9 -1.4 conserved protein of unknown function compare
PP_1912 -0.9 -2.4 Phosphate acyltransferase compare
PP_5568 -0.9 -2.8 conserved membrane protein of unknown function compare
PP_4069 -0.9 -2.0 conserved protein of unknown function compare
PP_4143 -0.9 -2.0 conserved protein of unknown function compare
PP_1326 -0.9 -1.3 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_0542 -0.9 -3.2 ethanolamine ammonia-lyase, beta-subunit compare
PP_3821 -0.9 -2.1 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5483 -0.9 -1.2 conserved protein of unknown function compare
PP_5090 -0.9 -0.7 putative cell division protein compare
PP_5176 -0.8 -1.8 conserved protein of unknown function compare
PP_0119 -0.8 -1.7 putative zinc uptake regulation protein ZUR compare
PP_0261 -0.8 -2.5 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_5303 -0.8 -1.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_3243 -0.8 -2.2 Acetyltransferase, GNAT family compare
PP_2137 -0.8 -1.5 beta-ketoadipyl CoA thiolase, beta component compare
PP_2429 -0.8 -1.0 putative Membrane protein compare
PP_5346 -0.8 -1.6 pyruvate carboxylase subunit B compare
PP_1048 -0.8 -1.0 putative protein secretion protein for export compare
PP_4045 -0.8 -1.5 conserved protein of unknown function compare
PP_3903 -0.8 -0.7 conserved protein of unknown function compare
PP_3643 -0.8 -2.1 putative Oxidoreductase compare
PP_1164 -0.8 -1.4 Transcriptional regulator, LysR family compare
PP_1788 -0.8 -1.2 conserved protein of unknown function compare
PP_2510 -0.8 -1.5 conserved protein of unknown function compare
PP_2950 -0.8 -2.2 conserved protein of unknown function compare
PP_5471 -0.8 -1.3 putative response regulator receiver protein compare
PP_5652 -0.8 -0.7 conserved protein of unknown function, phage origin compare
PP_4952 -0.8 -0.8 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_5240 -0.8 -1.5 Response regulator compare
PP_0117 -0.8 -2.1 Zn(2+) ABC transporter - permease subunit compare
PP_1062 -0.7 -1.6 MutT/nudix family protein compare
PP_2222 -0.7 -2.1 conserved protein of unknown function compare
PP_1535 -0.7 -2.3 putative Methyltransferase compare
PP_5475 -0.7 -0.8 conserved protein of unknown function compare
PP_4223 -0.7 -0.7 diaminobutyrate-2-oxoglutarate transaminase compare
PP_2580 -0.7 -1.6 conserved protein of unknown function compare
PP_0153 -0.7 -1.2 hypothetical protein compare
PP_5156 -0.7 -2.3 conserved exported protein of unknown function compare
PP_4660 -0.7 -1.7 Transcriptional regulator, LysR family compare
PP_0120 -0.7 -2.5 putative zinc ABC transporter compare
PP_5654 -0.7 -0.7 putative phosphotriesterase compare
PP_3013 -0.7 -1.9 conserved protein of unknown function compare
PP_4419 -0.7 -1.5 transposase compare
PP_3043 -0.7 -0.9 conserved protein of unknown function compare
PP_2947 -0.7 -2.2 putative Transcriptional regulator MvaT, P16 subunit compare
PP_4830 -0.7 -1.6 precorrin-6Y C(5,15)-methyltransferase compare
PP_1787 -0.7 -1.5 conserved protein of unknown function compare
PP_5533 -0.7 -0.8 conserved protein of unknown function compare
PP_3037 -0.7 -1.6 C4-type zinc finger protein, DksA/TraR family compare
PP_2749 -0.7 -2.1 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_1377 -0.7 -2.7 beta-ketoadipyl-CoA thiolase compare
PP_2459 -0.6 -1.7 ribose pyranase compare
PP_0241 -0.6 -1.5 Transporter compare
PP_2624 -0.6 -1.6 conserved protein of unknown function compare
PP_1678 -0.6 -1.4 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_3471 -0.6 -2.0 conserved protein of unknown function compare
PP_1269 -0.6 -1.1 Universal stress protein family compare
PP_t64 -0.6 -1.8 tRNA-Gly compare
PP_1479 -0.6 -1.5 HicB protein compare
PP_0512 -0.6 -1.4 hypothetical protein compare
PP_1349 -0.6 -2.4 ATP:cob(I)alamin adenosyltransferase compare
PP_2220 -0.6 -1.3 C4-type zinc finger protein, DksA/TraR family compare
PP_3971 -0.6 -0.8 conserved protein of unknown function compare
PP_4329 -0.6 -1.3 FlhB domain protein compare
PP_1716 -0.6 -0.9 Transcriptional regulator, Cro/CI family compare
PP_4564 -0.6 -2.0 putative Lipoprotein compare
PP_4406 -0.6 -1.3 conserved protein of unknown function compare
PP_5644 -0.6 -1.4 conserved membrane protein of unknown function compare
PP_2330 -0.6 -2.1 conserved protein of unknown function compare
PP_0407 -0.6 -2.1 DnaJ-like protein DjlA compare
PP_0999 -0.6 -1.7 carbamate kinase compare
PP_1824 -0.6 -0.5 Smr domain protein compare
PP_0859 -0.6 -2.5 putative ketoglutaramate omega-amidase compare
PP_3541 -0.6 -1.3 Transporter, MgtC family compare
PP_1757 -0.6 -2.0 DNA-binding transcriptional dual regulator compare
PP_5347 -0.6 -1.6 pyruvate carboxylase subunit A compare
PP_2610 -0.6 -2.1 conserved protein of unknown function compare
PP_0007 -0.6 -0.9 conserved hypothetical protein compare
PP_5556 -0.6 -1.6 putative bacteriophage lysis protein compare
PP_2721 -0.6 -2.0 conserved membrane protein of unknown function compare
PP_4995 -0.6 -2.6 putative protein possibly involved in the control of exopolysaccharide production compare
PP_1328 -0.6 -0.8 Protein MraZ compare
PP_0945 -0.6 -1.7 conserved protein of unknown function compare
PP_1008 -0.6 -1.2 RNA polymerase subunit sigma-24 compare
PP_4273 -0.6 -1.3 Transcriptional regulator, MerR family compare
PP_3790 -0.6 -0.6 diaminopimelate epimerase compare
PP_4843 -0.6 -2.1 putative Urea ABC transporter, permease protein compare
PP_0760 -0.6 -1.9 conserved membrane protein of unknown function compare
PP_5689 -0.6 -2.0 conserved protein of unknown function compare
PP_0511 -0.6 -2.7 putative methyltransferase compare
PP_5600 -0.6 -1.1 conserved protein of unknown function compare
PP_2878 -0.6 -1.1 conserved protein of unknown function compare
PP_5212 -0.6 -2.2 Oxidoreductase, iron-sulfur-binding compare
PP_5331 -0.6 -2.7 Long-chain acyl-CoA thioester hydrolase compare
PP_4850 -0.6 -1.9 conserved membrane protein of unknown function compare
PP_5603 -0.6 -2.2 putative FAD dependent oxidoreductase compare
PP_1930 -0.6 -1.5 arsenic resistance transcriptional regulator compare
PP_1583 -0.6 -1.1 putative Structural protein P5 compare
PP_4109 -0.6 -1.0 conserved protein of unknown function compare
PP_2826 -0.6 -1.8 Transcriptional regulator MexT compare
PP_1210 -0.6 -2.0 DNA-binding stress protein compare
PP_0440 -0.6 -0.9 Elongation factor Tu-A compare
PP_4166 -0.6 -2.2 conserved protein of unknown function compare
PP_3474 -0.6 -1.7 putative Curli fiber protein CsgE compare
PP_5265 -0.6 -2.0 Xanthine phosphoribosyltransferase compare
PP_2309 -0.6 -0.8 conserved protein of unknown function compare
PP_4774 -0.6 -2.7 divalent cation efflux transporter compare
PP_1374 -0.6 -1.8 conserved protein of unknown function compare
PP_2785 -0.6 -1.5 conserved exported protein of unknown function compare
PP_2697 -0.6 -2.3 putative oxidoreductase containing a flavin reductase domain compare
PP_3488 -0.6 -1.5 Sco1/SenC family protein compare
PP_3077 -0.5 -2.3 putative ABC transporter permease protein compare
PP_1790 -0.5 -1.2 putative Acylneuraminate cytidylyltransferase compare
PP_3929 -0.5 -1.8 conserved protein of unknown function compare
PP_1322 -0.5 -0.6 putative Lipoprotein compare
PP_3567 -0.5 -2.2 Transcriptional regulator, LysR family compare
PP_1430 -0.5 -2.2 putative periplasmic serine endoprotease DegP-like compare
PP_3424 -0.5 -2.1 Type II secretion pathway protein XcpS compare
PP_3883 -0.5 -0.9 putative Phage holin compare
PP_5232 -0.5 -1.0 conserved protein of unknown function compare
PP_2403 -0.5 -0.8 Chemotaxis protein CheY compare
PP_0831 -0.5 -2.2 hypothetical protein compare
PP_5546 -0.5 -0.9 conserved protein of unknown function compare
PP_1299 -0.5 -2.6 putative amino acid ABC transporter - membrane subunit compare
PP_5541 -0.5 -1.7 conserved protein of unknown function compare
PP_4426 -0.5 -1.5 Amino acid ABC transporter, permease protein compare
PP_3487 -0.5 -1.0 conserved exported protein of unknown function compare
PP_4591 -0.5 -1.1 Ribonuclease D compare
PP_2815 -0.5 -1.8 conserved protein of unknown function compare
PP_2113 -0.5 -2.3 Ribosomal RNA large subunit methyltransferase M compare
PP_5080 -0.5 -1.9 type 4 pili biogenesis protein compare
PP_5455 -0.5 -2.2 conserved exported protein of unknown function compare
PP_2500 -0.5 -1.8 conserved protein of unknown function compare
PP_2737 -0.5 -0.5 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_5579 -0.5 -1.7 conserved protein of unknown function compare
PP_0249 -0.5 -2.2 conserved protein of unknown function compare
PP_5658 -0.5 -1.3 protein of unknown function compare


Specific Phenotypes

For 1 genes in this experiment