| | gene | name | fitness | t score | description | |
|---|
| b0142 | folK | +1.8 | 1.2 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b1865 | nudB | +1.7 | 2.4 | dATP pyrophosphohydrolase (NCBI) | compare |
| b3860 | dsbA | +1.6 | 10.8 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b1476 | fdnI | +1.5 | 1.4 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b2683 | ygaH | +1.4 | 6.2 | predicted inner membrane protein (NCBI) | compare |
| b1185 | dsbB | +1.4 | 5.0 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b2684 | mprA | +1.3 | 5.0 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b1696 | ydiP | +1.3 | 2.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4551 | yheV | +1.1 | 3.0 | hypothetical protein (NCBI) | compare |
| b4438 | cyaR | +1.0 | 1.8 | sRNA effector of ompX mRNA instability, cAMP-induced; hfq-dependent (RefSeq) | compare |
| b1754 | b1754 | +1.0 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1370 | insH-5 | +1.0 | 1.5 | Rac prophage; IS5 transposase and trans-activator (NCBI) | compare |
| b4436 | ryeC | +1.0 | 0.9 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b2911 | ssrS | +1.0 | 1.7 | 6S regulatory RNA (NCBI) | compare |
| b4416 | rybA | +0.9 | 1.6 | unknown RNA (NCBI) | compare |
| b2293 | yfbT | +0.9 | 2.6 | putative phosphatase (VIMSS) | compare |
| b2156 | lysP | +0.9 | 6.5 | lysine transporter (NCBI) | compare |
| b0784 | moaD | +0.9 | 2.3 | molybdopterin synthase, small subunit (NCBI) | compare |
| b4426 | isrA | +0.9 | 1.5 | unknown RNA (NCBI) | compare |
| b1251 | yciI | +0.9 | 2.9 | orf, hypothetical protein (VIMSS) | compare |
| b4394 | yjjX | +0.9 | 2.8 | orf, hypothetical protein (VIMSS) | compare |
| b3181 | greA | +0.9 | 3.5 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b2531 | iscR | +0.9 | 1.2 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1562 | hokD | +0.8 | 2.2 | Qin prophage; small toxic polypeptide (NCBI) | compare |
| b1138 | ymfE | +0.8 | 1.4 | e14 prophage; predicted inner membrane protein (NCBI) | compare |
| b1842 | holE | +0.8 | 1.7 | DNA polymerase III, theta subunit (NCBI) | compare |
| b1920 | fliY | +0.8 | 1.9 | cystine transporter subunit (NCBI) | compare |
| b2808 | gcvA | +0.8 | 2.8 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2080 | b2080 | +0.8 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b4603 | rseX | +0.8 | 0.5 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b1263 | trpD | +0.8 | 1.7 | bifunctional indole-3-glycerol-phosphate synthase/anthranilate phosphoribosyltransferase (NCBI) | compare |
| b1143 | ymfI | +0.8 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b3183 | obgE | +0.8 | 1.0 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b0817 | mntR | +0.8 | 3.1 | DNA-binding transcriptional regulator of mntH (NCBI) | compare |
| b3257 | yhdT | +0.7 | 2.3 | conserved inner membrane protein (NCBI) | compare |
| b4533 | ynfO | +0.7 | 1.5 | Qin prophage; predicted protein (NCBI) | compare |
| b2433 | b2433 | +0.7 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b4622 | ytcA | +0.7 | 3.0 | hypothetical protein (RefSeq) | compare |
| b1075 | flgD | +0.7 | 2.1 | flagellar basal body rod modification protein D (NCBI) | compare |
| b1558 | cspF | +0.7 | 1.4 | Qin prophage; cold shock protein (NCBI) | compare |
| b2682 | ygaZ | +0.7 | 2.9 | predicted transporter (NCBI) | compare |
| b0880 | cspD | +0.7 | 1.5 | cold shock protein homolog (NCBI) | compare |
| b4598 | yncL | +0.7 | 1.6 | hypothetical protein (RefSeq) | compare |
| b1231 | tyrT | +0.7 | 0.7 | tRNA-Tyr (NCBI) | compare |
| b1147 | ymfL | +0.7 | 1.7 | e14 prophage; predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b1647 | ydhF | +0.7 | 2.0 | predicted oxidoreductase (NCBI) | compare |
| b1516 | lsrB | +0.6 | 2.2 | AI2 transporter (NCBI) | compare |
| b1080 | flgI | +0.6 | 3.9 | homolog of Salmonella P-ring of flagella basal body (VIMSS) | compare |
| b0580 | ybdJ | +0.6 | 1.5 | predicted inner membrane protein (NCBI) | compare |
| b4631 | ykgQ | +0.6 | 1.1 | no description | compare |
| b4406 | yaeP | +0.6 | 1.7 | hypothetical protein (NCBI) | compare |
| b1563 | relE | +0.6 | 1.2 | Qin prophage; toxin of the RelE-RelB toxin-antitoxin system (NCBI) | compare |
| b2904 | gcvH | +0.6 | 1.6 | glycine cleavage system protein H (NCBI) | compare |
| b4451 | ryhB | +0.6 | 0.9 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b1627 | rsxA | +0.6 | 1.9 | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | compare |
| b1566 | flxA | +0.6 | 1.8 | Qin prophage; predicted protein (NCBI) | compare |
| b1879 | flhA | +0.6 | 3.8 | flagellar biosynthesis protein A (NCBI) | compare |
| b2480 | bcp | +0.6 | 2.6 | thioredoxin-dependent thiol peroxidase (NCBI) | compare |
| b1728 | ydjM | +0.6 | 1.6 | predicted inner membrane protein regulated by LexA (RefSeq) | compare |
| b3250 | mreC | +0.6 | 1.2 | cell wall structural complex MreBCD transmembrane component MreC (NCBI) | compare |
| b1751 | ydjY | +0.6 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b0840 | deoR | +0.6 | 2.0 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4457 | csrC | +0.6 | 1.9 | regulatory RNA (NCBI) | compare |
| b2674 | nrdI | +0.6 | 2.2 | hypothetical protein (NCBI) | compare |
| b2912 | ygfA | +0.6 | 1.7 | putative ligase (VIMSS) | compare |
| b4030 | yjbA | +0.5 | 2.5 | phosphate-starvation-inducible protein PsiE (NCBI) | compare |
| b2025 | hisF | +0.5 | 2.1 | imidazole glycerol phosphate synthase subunit HisF (NCBI) | compare |
| b1950 | fliR | +0.5 | 1.1 | flagellar biosynthesis protein R (NCBI) | compare |
| b1809 | b1809 | +0.5 | 3.0 | orf, hypothetical protein (VIMSS) | compare |
| b2060 | b2060 | +0.5 | 2.9 | orf, hypothetical protein (VIMSS) | compare |
| b2059 | wcaA | +0.5 | 2.2 | predicted glycosyl transferase (NCBI) | compare |
| b4633 | xisD | +0.5 | 2.0 | no description | compare |
| b0348 | mhpB | +0.5 | 2.8 | 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (NCBI) | compare |
| b4373 | rimI | +0.5 | 1.7 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b1020 | phoH | +0.5 | 3.0 | conserved protein with nucleoside triphosphate hydrolase domain (NCBI) | compare |
| b1618 | uidR | +0.5 | 1.9 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4585 | sroB | +0.5 | 0.7 | Novel sRNA, function unknown (RefSeq) | compare |
| b3101 | yqjF | +0.5 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b2125 | yehT | +0.5 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b2281 | nuoI | +0.5 | 1.5 | NADH dehydrogenase subunit I (NCBI) | compare |
| b0872 | hcr | +0.5 | 2.1 | HCP oxidoreductase, NADH-dependent (NCBI) | compare |
| b0597 | ybdB | +0.5 | 2.1 | hypothetical protein (NCBI) | compare |
| b1480 | sra | +0.5 | 0.5 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b1953 | b1953 | +0.5 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1397 | paaJ | +0.5 | 2.6 | acetyl-CoA acetyltransferase (NCBI) | compare |
| b3239 | yhcO | +0.5 | 1.8 | predicted barnase inhibitor (NCBI) | compare |
| b2726 | hypA | +0.5 | 1.7 | protein involved in nickel insertion into hydrogenases 3 (NCBI) | compare |
| b4647 | mokA | +0.5 | 0.4 | no description | compare |
| b1670 | ydhU | +0.5 | 2.0 | predicted cytochrome (NCBI) | compare |
| b1514 | lsrC | +0.5 | 1.1 | AI2 transporter (NCBI) | compare |
| b0442 | ybaV | +0.5 | 2.6 | hypothetical protein (NCBI) | compare |
| b2688 | gshA | +0.5 | 2.8 | glutamate--cysteine ligase (NCBI) | compare |
| b1388 | paaA | +0.5 | 1.8 | predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation (NCBI) | compare |
| b1261 | trpB | +0.5 | 1.3 | tryptophan synthase subunit beta (NCBI) | compare |
| b4441 | glmY | +0.5 | 1.1 | sRNA activator of glmS mRNA (RefSeq) | compare |
| b3169 | nusA | +0.5 | 1.5 | transcription elongation factor NusA (NCBI) | compare |
| b1984 | asnW | +0.5 | 0.6 | tRNA-Asn (NCBI) | compare |
| b2705 | srlD | +0.5 | 2.6 | 3-ketoacyl-(acyl-carrier-protein) reductase (NCBI) | compare |
| b1221 | narL | +0.5 | 1.6 | DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) (NCBI) | compare |
| b1832 | yebR | +0.5 | 2.1 | free methionine-(R)-sulfoxide reductase (RefSeq) | compare |
| b1724 | ydiZ | +0.5 | 1.0 | hypothetical protein (NCBI) | compare |
| b1079 | flgH | +0.5 | 1.4 | flagellar L-ring protein precursor H (NCBI) | compare |
| b2300 | yfcE | +0.5 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b4370 | leuQ | +0.5 | 0.9 | tRNA-Leu (NCBI) | compare |
| b1688 | ydiK | +0.5 | 2.3 | predicted inner membrane protein (NCBI) | compare |
| b1991 | cobT | +0.5 | 2.2 | nicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferase (NCBI) | compare |
| b1399 | paaX | +0.5 | 1.8 | DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive (NCBI) | compare |
| b2499 | purM | +0.5 | 1.5 | phosphoribosylaminoimidazole synthetase (NCBI) | compare |
| b4588 | ylcH | +0.5 | 1.7 | hypothetical protein, DLP12 prophage (RefSeq) | compare |
| b0850 | ybjC | +0.5 | 1.4 | predicted inner membrane protein (NCBI) | compare |
| b1941 | fliI | +0.5 | 2.7 | flagellum-specific ATP synthase (NCBI) | compare |
| b2782 | chpA | +0.5 | 1.9 | toxin of the ChpA-ChpR toxin-antitoxin system, endoribonuclease (NCBI) | compare |
| b1315 | ycjS | +0.5 | 2.1 | predicted oxidoreductase, NADH-binding (NCBI) | compare |
| b1519 | tam | +0.4 | 1.4 | trans-aconitate 2-methyltransferase (NCBI) | compare |
| b2980 | glcC | +0.4 | 2.4 | DNA-binding transcriptional dual regulator, glycolate-binding (NCBI) | compare |
| b2637 | yfjT | +0.4 | 1.3 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b1072 | flgA | +0.4 | 2.0 | flagellar basal body P-ring biosynthesis protein A (NCBI) | compare |
| b4217 | ytfK | +0.4 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b4527 | b1354 | +0.4 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b4450 | arcZ | +0.4 | 1.6 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b1219 | ychN | +0.4 | 1.0 | hypothetical protein (NCBI) | compare |
| b4353 | yjiX | +0.4 | 2.3 | hypothetical protein (NCBI) | compare |
| b1844 | exoX | +0.4 | 1.9 | exodeoxyribonuclease X (NCBI) | compare |
| b1939 | fliG | +0.4 | 1.8 | flagellar motor switch protein G (NCBI) | compare |
| b4388 | serB | +0.4 | 2.0 | 3-phosphoserine phosphatase (NCBI) | compare |
| b2230 | yfaA | +0.4 | 3.0 | orf, hypothetical protein (VIMSS) | compare |
| b2027 | wzzB | +0.4 | 2.0 | regulator of length of O-antigen component of lipopolysaccharide chains (VIMSS) | compare |
| b4573 | insZ | +0.4 | 1.6 | no description | compare |
| b0828 | iaaA | +0.4 | 1.3 | L-asparaginase (NCBI) | compare |
| b2457 | cchA | +0.4 | 1.4 | detox protein (VIMSS) | compare |
| b1669 | ydhT | +0.4 | 1.1 | hypothetical protein (NCBI) | compare |
| b2846 | yqeH | +0.4 | 0.2 | orf, hypothetical protein (VIMSS) | compare |
| b2259 | pmrD | +0.4 | 0.6 | polymyxin resistance protein B (VIMSS) | compare |
| b1077 | flgF | +0.4 | 2.5 | flagellar component of cell-proximal portion of basal-body rod (NCBI) | compare |
| b0219 | yafV | +0.4 | 1.5 | predicted C-N hydrolase family amidase, NAD(P)-binding (NCBI) | compare |
| b2810 | csdA | +0.4 | 2.2 | cysteine sulfinate desulfinase (NCBI) | compare |
| b3107 | yhaL | +0.4 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b4458 | oxyS | +0.4 | 0.6 | global regulatory RNA (NCBI) | compare |
| b3766 | ilvL | +0.4 | 1.4 | ilvG operon leader peptide (NCBI) | compare |
| b1679 | sufE | +0.4 | 1.3 | cysteine desufuration protein SufE (NCBI) | compare |
| b1594 | dgsA | +0.4 | 1.2 | DNA-binding transcriptional repressor (NCBI) | compare |
| b0487 | cueR | +0.4 | 1.4 | DNA-binding transcriptional activator of copper-responsive regulon genes (NCBI) | compare |
| b1569 | dicC | +0.4 | 1.4 | Qin prophage; DNA-binding transcriptional regulator for DicB (NCBI) | compare |
| b0810 | glnP | +0.4 | 1.5 | glutamine ABC transporter permease protein (NCBI) | compare |
| b4414 | tff | +0.4 | 1.4 | unknown RNA (NCBI) | compare |
| b1943 | fliK | +0.4 | 2.1 | flagellar hook-length control protein (NCBI) | compare |
| b2211 | yojI | +0.4 | 2.8 | fused predicted multidrug transport subunits of ABC superfamily: membrane component/ATP-binding component (NCBI) | compare |
| b1752 | ydjZ | +0.4 | 1.0 | conserved inner membrane protein (NCBI) | compare |
| b2600 | tyrA | +0.4 | 2.3 | fused chorismate mutase T/prephenate dehydrogenase (NCBI) | compare |
| b1640 | ydhH | +0.4 | 1.6 | anhydro-N-acetylmuramic acid kinase (NCBI) | compare |
| b1311 | ycjO | +0.4 | 2.5 | predicted sugar transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b0854 | potF | +0.4 | 1.4 | putrescine transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) | compare |
| b1341 | b1341 | +0.4 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b2047 | wcaJ | +0.4 | 1.3 | predicted UDP-glucose lipid carrier transferase (NCBI) | compare |
| b1358 | ydaT | +0.4 | 0.6 | Rac prophage; predicted protein (NCBI) | compare |
| b1310 | ycjN | +0.4 | 1.7 | predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) | compare |
| b3858 | yihD | +0.4 | 0.8 | hypothetical protein (NCBI) | compare |
| b1063 | yceB | +0.4 | 1.2 | predicted lipoprotein (NCBI) | compare |
| b0979 | appB | +0.4 | 1.4 | cytochrome bd-II oxidase, subunit II (NCBI) | compare |
| b1244 | oppB | +0.4 | 2.3 | oligopeptide permease ABC transporter membrane protein (NCBI) | compare |
| b2169 | fruB | +0.4 | 2.1 | fused fructose-specific PTS enzymes: IIA component/HPr component (NCBI) | compare |
| b0752 | zitB | +0.4 | 2.1 | zinc transporter ZitB (NCBI) | compare |
| b0987 | ymcD | +0.4 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b4369 | leuP | +0.4 | 1.1 | tRNA-Leu (NCBI) | compare |
| b2969 | yghE | +0.4 | 1.3 | predicted secretion pathway protein, L-type protein (pseudogene) (RefSeq) | compare |
| b4053 | alr | +0.4 | 2.7 | alanine racemase (NCBI) | compare |
| b0502 | ylbG | +0.4 | 1.2 | no description | compare |
| b1061 | dinI | +0.4 | 1.5 | DNA damage-inducible protein I (NCBI) | compare |
| b1442 | ydcU | +0.4 | 1.7 | predicted spermidine/putrescine transporter subunit (NCBI) | compare |
| b1530 | marR | +0.4 | 0.9 | multiple antibiotic resistance protein; repressor of mar operon (VIMSS) | compare |
| b2432 | yfeY | +0.4 | 0.9 | hypothetical protein (NCBI) | compare |
| b1191 | b1191 | +0.4 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b4521 | ycgI | +0.4 | 1.1 | hypothetical protein (NCBI) | compare |
| b0520 | ylbF | +0.4 | 1.8 | hypothetical protein (NCBI) | compare |
| b1572 | ydfB | +0.4 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b0398 | sbcD | +0.4 | 1.7 | exonuclease, dsDNA, ATP-dependent (NCBI) | compare |
| b1372 | b1372 | +0.4 | 1.8 | putative membrane protein (VIMSS) | compare |
| b0796 | ybiH | +0.4 | 1.0 | putative transcriptional regulator (VIMSS) | compare |
| b1110 | ycfJ | +0.4 | 1.9 | hypothetical protein (NCBI) | compare |
| b3636 | rpmG | +0.4 | 0.6 | 50S ribosomal protein L33 (NCBI) | compare |
| b2071 | yegJ | +0.4 | 0.4 | hypothetical protein (NCBI) | compare |
| b0378 | yaiW | +0.4 | 2.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0735 | ybgE | +0.4 | 1.5 | conserved inner membrane protein (NCBI) | compare |
| b2365 | dsdX | +0.4 | 2.6 | predicted transporter (NCBI) | compare |
| b2092 | gatC | +0.4 | 2.0 | galactitol-specific enzyme IIC component of PTS (NCBI) | compare |
| b1287 | yciW | +0.4 | 1.4 | putative oxidoreductase (VIMSS) | compare |
| b1806 | yeaY | +0.4 | 0.9 | predicted lipoprotein (NCBI) | compare |
| b0845 | ybjJ | +0.4 | 2.1 | predicted transporter (NCBI) | compare |
| b0220 | ivy | +0.4 | 2.0 | inhibitor of vertebrate C-lysozyme (NCBI) | compare |
| b1153 | ymfQ | +0.4 | 0.8 | e14 prophage; conserved protein (NCBI) | compare |
| b0756 | galM | +0.4 | 1.7 | galactose-1-epimerase (mutarotase) (NCBI) | compare |
| b2903 | gcvP | +0.4 | 3.0 | glycine dehydrogenase (NCBI) | compare |
| b0778 | bioD | +0.4 | 1.3 | dethiobiotin synthetase (NCBI) | compare |
| b1332 | ynaJ | +0.4 | 0.2 | predicted inner membrane protein (NCBI) | compare |
| b0249 | ykfF | +0.4 | 0.9 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b0120 | speD | +0.4 | 2.4 | S-adenosylmethionine decarboxylase proenzyme (NCBI) | compare |
| b0858 | ybjO | +0.4 | 0.5 | predicted inner membrane protein (NCBI) | compare |
| b2920 | ygfH | +0.4 | 1.8 | propionyl-CoA:succinate-CoA transferase (NCBI) | compare |
| b4137 | cutA | +0.4 | 2.3 | copper binding protein, copper sensitivity (NCBI) | compare |
| b1427 | rimL | +0.4 | 0.9 | ribosomal-protein-L7/L12-serine acetyltransferase (NCBI) | compare |