Experiment set9IT012 for Escherichia coli BW25113

LB Anaerobic with Chlorhexidine diacetate salt hydrate 0.000000625 mM

Group: stress
Media: LB + Chlorhexidine diacetate salt hydrate (6.25E-04 mM)
Culturing: Keio_ML9a, 96 deep-well microplate; Multitron, Anaerobic, at 37 (C), shaken=0 rpm
By: Hans_Hualan on 7/20/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 18 genes in this experiment

For stress Chlorhexidine diacetate salt hydrate in Escherichia coli BW25113

For stress Chlorhexidine diacetate salt hydrate across organisms

SEED Subsystems

Subsystem	#Specific
Proteasome bacterial	2
Proteolysis in bacteria, ATP-dependent	2
Beta-Glucoside Metabolism	1
Folate Biosynthesis	1
Fructose utilization	1
Glycerolipid and Glycerophospholipid Metabolism in Bacteria	1
Multidrug Resistance Efflux Pumps	1
Pentose phosphate pathway	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Porphyrin and chlorophyll metabolism
• Phenylpropanoid biosynthesis
• Biosynthesis of alkaloids derived from shikimate pathway
• Pentose phosphate pathway
• Ubiquinone and menaquinone biosynthesis
• Histidine metabolism
• Tyrosine metabolism
• Tryptophan metabolism
• Benzoxazinone biosynthesis
• Aminophosphonate metabolism
• Cyanoamino acid metabolism
• Starch and sucrose metabolism
• High-mannose type N-glycan biosynthesis
• Nucleotide sugars metabolism
• Glycerolipid metabolism
• Glycerophospholipid metabolism
• Sphingolipid metabolism
• Naphthalene and anthracene degradation
• Carotenoid biosynthesis - General
• Flavonoid biosynthesis
• Anthocyanin biosynthesis
• Alkaloid biosynthesis I
• Insect hormone biosynthesis
• Biosynthesis of phenylpropanoids
• Biosynthesis of plant hormones

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
neolinustatin bioactivation	3	2	2
siroheme biosynthesis	4	4	2
linustatin bioactivation	4	2	2
linamarin degradation	2	1	1
lotaustralin degradation	2	1	1
cardiolipin biosynthesis II	3	3	1
cardiolipin biosynthesis I	3	3	1
cellulose degradation II (fungi)	3	2	1
factor 430 biosynthesis	7	3	2
cardiolipin and phosphatidylethanolamine biosynthesis (Xanthomonas)	4	3	1
pentose phosphate pathway (non-oxidative branch) I	5	5	1
coumarin biosynthesis (via 2-coumarate)	5	2	1
α-tomatine degradation	6	1	1
superpathway of cardiolipin biosynthesis (bacteria)	13	11	2
cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation)	13	2	2
cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion)	15	3	2
pentose phosphate pathway	8	8	1
formaldehyde assimilation II (assimilatory RuMP Cycle)	9	7	1
Rubisco shunt	10	9	1
superpathway of phospholipid biosynthesis III (E. coli)	12	12	1
formaldehyde assimilation III (dihydroxyacetone cycle)	12	10	1
firefly bioluminescence	14	2	1
Bifidobacterium shunt	15	13	1
adenosylcobalamin biosynthesis II (aerobic)	33	17	2
superpathway of glucose and xylose degradation	17	17	1
adenosylcobalamin biosynthesis I (anaerobic)	36	16	2