Experiment set9IT006 for Agrobacterium fabrum C58

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

200 most important genes:

  gene name fitness t score description  
Atu3763 -5.0 -2.3 hypothetical protein compare
Atu2728 -3.4 -6.5 beta (1-->2) glucan export ATP-binding protein compare
Atu3598 -3.2 -2.0 thiol:disulfide interchange protein compare
Atu0031 -3.0 -1.3 PTS system, IIA component compare
Atu0434 -2.8 -2.3 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1566 -2.3 -1.0 hypothetical protein compare
Atu0876 -2.2 -2.2 superoxide dismutase compare
Atu3469 -2.1 -2.5 phosphoglyceromutase compare
Atu4773 -2.1 -1.5 two component response regulator compare
Atu1028 -2.1 -2.2 hypothetical protein compare
Atu3012 -2.0 -2.0 hypothetical protein compare
Atu6098 -2.0 -0.6 transcriptional regulator, HTH family compare
Atu4317 -2.0 -3.1 TetR family transcriptional regulator compare
Atu0189 -2.0 -3.2 ABC transporter, membrane spanning protein (peptide) compare
Atu1810 -2.0 -1.4 hypothetical protein compare
Atu2684 -2.0 -1.5 hypothetical protein compare
Atu1021 -1.9 -2.1 outer membrane protein compare
Atu2125 -1.8 -1.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu8056 -1.8 -1.0 hypothetical protein compare
Atu2239 -1.8 -3.1 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0647 -1.7 -5.0 phosphoribosylamine--glycine ligase compare
Atu2620 -1.7 -1.2 hypothetical protein compare
Atu3730 -1.7 -1.1 hypothetical protein compare
Atu1446 -1.6 -1.6 two component response regulator compare
Atu3740 -1.6 -5.7 fructose bisphosphate aldolase compare
Atu1075 -1.6 -3.8 amidophosphoribosyltransferase compare
Atu0040 -1.6 -0.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0400 -1.6 -2.5 orotate phosphoribosyltransferase compare
Atu0340 -1.6 -1.8 SAM dependent methyltransferase compare
Atu0999 -1.5 -6.4 magnesium transport protein compare
Atu0086 -1.5 -1.0 ribosome-binding factor A compare
Atu1850 -1.5 -2.4 phosphoribosylformylglycinamidine synthetase II compare
Atu3162 -1.5 -5.8 LacI family transcriptional regulator compare
Atu2439 -1.5 -1.1 hypothetical protein compare
Atu0050 -1.5 -4.5 two component response regulator compare
Atu4418 -1.5 -3.2 glutaryl-CoA dehydrogenase compare
Atu4469 -1.4 -2.6 iron ABC transporter permease compare
Atu0941 -1.4 -0.7 hypothetical protein compare
Atu1307 -1.4 -3.7 dihydroorotase compare
Atu4711 -1.4 -3.4 two component sensor kinase compare
Atu1141 -1.4 -4.5 Phosphoribosylglycinamide synthetase compare
Atu2057 -1.4 -2.2 DNA helicase II compare
Atu2441 -1.4 -1.8 RNA methylase compare
Atu0784 -1.4 -2.0 hypothetical protein compare
Atu4217 -1.3 -1.2 TetR family transcriptional regulator compare
Atu0070 -1.3 -6.5 ribonucleoside-diphosphate reductase 2 alpha chain compare
Atu5125 -1.3 -2.9 GntR family transcriptional regulator compare
Atu0399 -1.3 -3.5 dihydroorotase compare
Atu2052 -1.3 -4.5 hypothetical protein compare
Atu4502 -1.3 -4.0 cobalamin synthesis protein compare
Atu1760 -1.3 -0.9 hypothetical protein compare
Atu1845 -1.3 -2.7 phosphoribosylformylglycinamidine synthase I compare
Atu2286 -1.3 -1.2 hypothetical protein compare
Atu8138 -1.3 -1.2 hypothetical protein compare
Atu3486 -1.2 -1.7 DeoR family transcriptional regulator compare
Atu1140 -1.2 -3.4 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0190 -1.2 -4.3 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1364 -1.2 -3.0 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0051 -1.2 -3.6 two component sensor kinase compare
Atu3754 -1.2 -2.0 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu8162 -1.1 -1.1 hypothetical protein compare
Atu8035 -1.1 -1.1 hypothetical protein compare
Atu0460 -1.1 -5.2 hypothetical protein compare
Atu4451 -1.1 -6.1 mannitol 2-dehydrogenase compare
Atu2832 -1.1 -2.8 tRNA modification GTPase compare
Atu2294 -1.1 -3.1 aminoglycoside N6'-acetyltransferase compare
Atu1223 -1.1 -0.9 hypothetical protein compare
Atu3727 -1.1 -2.7 hypothetical protein compare
Atu1417 -1.1 -4.6 enoyl-CoA hydratase compare
Atu3739 -1.1 -1.4 phosphoglycerate kinase compare
Atu1468 -1.1 -4.2 hypothetical protein compare
Atu4686 -1.0 -1.9 hypothetical protein compare
Atu8054 -1.0 -0.5 hypothetical protein compare
Atu0361 -1.0 -1.8 transcriptional regulator compare
Atu1774 -1.0 -3.7 ABC transporter, substrate binding protein (peptide) compare
Atu1039 -1.0 -2.1 DNA repair protein RecO compare
Atu2113 -1.0 -1.8 N-acetylmuramoyl-L-alanine amidase compare
Atu1449 -1.0 -3.6 potassium uptake protein compare
Atu4505 -1.0 -3.0 LacI family transcriptional regulator compare
Atu3481 -1.0 -3.0 enoyl-CoA hydratase compare
Atu4144 -1.0 -0.7 hypothetical protein compare
Atu2831 -1.0 -2.7 glucose inhibited division protein A compare
Atu2432 -1.0 -1.4 hypothetical protein compare
Atu2207 -1.0 -2.9 two component sensor kinase compare
Atu6131 -1.0 -2.7 TraR Antiactivator compare
Atu1537 -1.0 -4.2 cytochrome-c oxidase, FixN chain compare
Atu3759 -1.0 -0.9 hypothetical protein compare
Atu2063 -1.0 -0.9 hypothetical protein compare
Atu1527 -1.0 -2.9 nitrogen fixation protein FixS compare
Atu1204 -1.0 -3.3 potassium uptake protein compare
Atu4471 -1.0 -5.2 ABC transporter substrate-binding protein compare
Atu1714 -1.0 -0.9 exonuclease III compare
Atu1874 -1.0 -2.0 RecA protein compare
Atu1291 -1.0 -1.5 hypothetical protein compare
Atu5088 -1.0 -1.3 hypothetical protein compare
Atu2640 -1.0 -2.3 hypothetical protein compare
Atu2824 -1.0 -3.3 hypothetical protein compare
Atu2117 -0.9 -2.8 lytic murein transglycosylase compare
Atu0119 -0.9 -0.7 hypothetical protein compare
Atu0463 -0.9 -3.6 hypothetical protein compare
Atu1801 -0.9 -1.6 hypothetical protein compare
Atu3465 -0.9 -2.3 metallo-beta-lactamase superfamily protein compare
Atu0188 -0.9 -1.6 ABC transporter, membrane spanning protein (peptide) compare
Atu3750 -0.9 -2.2 thiamine-phosphate pyrophosphorylase compare
Atu8166 -0.9 -2.6 hypothetical protein compare
Atu2740 -0.9 -3.0 transcriptional regulator, GntR family compare
Atu0458 -0.9 -3.2 hypothetical protein compare
Atu0453 -0.9 -4.4 hypothetical protein compare
Atu3491 -0.9 -2.0 hypothetical protein compare
Atu1154 -0.9 -1.7 hypothetical protein compare
Atu1592 -0.9 -4.5 hypothetical protein compare
Atu4077 -0.9 -4.6 glycogen branching protein compare
Atu4824 -0.9 -4.5 IclR family transcriptional regulator compare
Atu2807 -0.9 -2.7 cob(I)alamin adenosyltransferase compare
Atu3579 -0.9 -1.4 lactoylglutathione lyase compare
Atu8083 -0.9 -5.3 hypothetical protein compare
Atu1754 -0.9 -1.3 hypothetical protein compare
Atu4470 -0.9 -3.8 iron ABC transporter ATPase compare
Atu1558 -0.9 -2.1 permease compare
Atu2127 -0.8 -3.9 L-carnitine dehydratase compare
Atu5115 -0.8 -1.0 hypothetical protein compare
Atu4161 -0.8 -0.9 hypothetical protein compare
Atu0062 -0.8 -4.1 transcriptional regulator, ROK family compare
Atu0017 -0.8 -1.7 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2204 -0.8 -1.2 hypothetical protein compare
Atu0893 -0.8 -2.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu0976 -0.8 -1.6 cycL protein compare
Atu0437 -0.8 -2.0 hypothetical protein compare
Atu0703 -0.8 -1.0 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu3476 -0.8 -2.5 AsnC family transcriptional regulator compare
Atu6186 -0.8 -2.4 virA/G regulated protein compare
Atu1779 -0.8 -1.1 hypothetical protein compare
Atu3578 -0.8 -3.0 glycerol-3-phosphate dehydrogenase compare
Atu0401 -0.8 -2.7 fructokinase compare
Atu1739 -0.8 -2.2 permease compare
Atu0436 -0.8 -5.0 hypothetical protein compare
Atu2045 -0.8 -2.7 HFLK protein compare
Atu0184 -0.8 -1.0 glucokinase compare
Atu4825 -0.8 -3.2 dehydrogenase compare
Atu0421 -0.8 -0.6 ABC transporter, membrane spanning protein compare
Atu1110 -0.8 -1.6 cytosol aminopeptidase compare
Atu1897 -0.8 -2.6 short chain dehydrogenase compare
Atu3293 -0.8 -3.2 D-amino acid dehydrogenase small subunit compare
Atu0769 -0.8 -0.7 protoheme IX farnesyltransferase compare
Atu3597 -0.8 -4.0 3-hydroxybutyryl-CoA dehydrogenase compare
Atu2217 -0.8 -2.5 hypothetical protein compare
Atu0912 -0.8 -0.8 Na+/H+ antiporter compare
Atu0660 -0.8 -3.5 hydrolase compare
Atu0939 -0.8 -1.8 PemI protein compare
Atu3472 -0.8 -2.0 2-oxoisovalerate dehydrogenase subunit beta compare
Atu1182 -0.7 -0.9 hypothetical protein compare
Atu1422 -0.7 -3.7 transcriptional regulator, MarR family compare
Atu0454 -0.7 -4.3 hypothetical protein compare
Atu0486 -0.7 -1.7 dihydroorotate dehydrogenase compare
Atu2274 -0.7 -2.9 cation efflux system protein compare
Atu8036 -0.7 -1.9 protein YBGT-like protein compare
Atu1099 -0.7 -2.1 hypothetical protein compare
Atu0153 -0.7 -2.3 transcriptional regulator, Fur family compare
Atu1026 -0.7 -1.0 hypothetical protein compare
Atu0029 -0.7 -2.4 S-adenosylhomocysteine hydrolase compare
Atu1321 -0.7 -2.0 hypothetical protein compare
Atu3313 -0.7 -2.2 hypothetical protein compare
Atu2479 -0.7 -1.5 tRNA-Gly compare
Atu6114 -0.7 -1.1 hypothetical protein compare
Atu0852 -0.7 -2.7 transcriptional regulator, MarR family compare
Atu3337 -0.7 -3.0 LacI family transcriptional regulator compare
Atu1619 -0.7 -1.7 protein-export membrane protein SECG compare
Atu0071 -0.7 -3.2 ribonucleoside-diphosphate reductase 2 beta chain compare
Atu0895 -0.7 -1.6 ABC transporter, substrate binding protein compare
Atu0170 -0.7 -3.8 hypothetical protein compare
Atu1173 -0.7 -3.8 MFS permease compare
Atu1344 -0.7 -1.0 hypothetical protein compare
Atu8052 -0.7 -0.7 hypothetical protein compare
Atu0640 -0.7 -1.3 hypothetical protein compare
Atu6159 -0.7 -2.2 hypothetical protein compare
Atu2184 -0.7 -2.4 transcriptional regulator, AsnC family compare
Atu4685 -0.7 -3.7 LacI family transcriptional regulator compare
Atu0355 -0.7 -3.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu3603 -0.7 -1.0 two component response regulator compare
Atu0971 -0.7 -1.9 two component sensor kinase compare
Atu1534 -0.7 -2.8 cytochrome-c oxidase, FixP chain compare
Atu8128 -0.7 -2.7 putative bacteriophage P2 tail protein compare
Atu3518 -0.7 -2.8 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu6153 -0.7 -1.7 conserved hypothetical protein compare
Atu1457 -0.7 -1.4 hypothetical protein compare
Atu2041 -0.7 -0.9 acetyltransferase compare
Atu0464 -0.7 -3.1 hypothetical protein compare
Atu4446 -0.7 -3.8 hypothetical protein compare
Atu1447 -0.7 -1.2 two component sensor kinase compare
Atu3171 -0.7 -2.8 sugar ABC transporter ATPase compare
Atu3712 -0.7 -0.9 hypothetical protein compare
Atu0461 -0.7 -3.3 hypothetical protein compare
Atu0457 -0.7 -4.3 hypothetical protein compare
Atu1260 -0.7 -0.7 hypothetical protein compare
Atu0452 -0.6 -2.7 hypothetical protein compare
Atu2120 -0.6 -1.7 O-methyltransferase compare
Atu2367 -0.6 -1.9 hypothetical protein compare
Atu3480 -0.6 -2.5 hydroxymethylglutaryl-CoA lyase compare
Atu0354 -0.6 -1.0 ferric uptake regulator compare
Atu2478 -0.6 -2.0 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment