Experiment set9IT003 for Escherichia coli BW25113

LB Anaerobic with Nitrofurantoin 0.00003125 mM

Group: stress
Media: LB + Nitrofurantoin (3.13E-02 mM)
Culturing: Keio_ML9a, 96 deep-well microplate; Multitron, Anaerobic, at 37 (C), shaken=0 rpm
By: Hans_Hualan on 7/20/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 16 genes in this experiment

For stress Nitrofurantoin in Escherichia coli BW25113

For stress Nitrofurantoin across organisms

SEED Subsystems

Subsystem	#Specific
DNA repair, UvrABC system	3
DNA repair, bacterial RecFOR pathway	3
DNA-replication	2
Campylobacter Iron Metabolism	1
DNA Repair Base Excision	1
Glycine Biosynthesis	1
Glycine and Serine Utilization	1
Iron acquisition in Vibrio	1
Pterin biosynthesis	1
Transport of Iron	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Porphyrin and chlorophyll metabolism
• Puromycin biosynthesis
• Glycine, serine and threonine metabolism
• Nucleotide sugars metabolism
• alpha-Linolenic acid metabolism
• Trinitrotoluene degradation
• Folate biosynthesis
• Carotenoid biosynthesis - General
• Alkaloid biosynthesis I
• Insect hormone biosynthesis

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
L-threonine degradation II	2	2	1
tetrahydropteridine recycling	2	2	1
L-aspartate degradation III (anaerobic)	3	3	1
L-aspartate degradation II (aerobic)	3	3	1
L-phenylalanine degradation V	3	1	1
superpathway of L-threonine metabolism	18	16	1