Experiment set8S697 for Pseudomonas aeruginosa MRSN321
PAO1_MA4_d
Group: phageMedia: LB
Culturing: Paeruginosa_MRSN321_ML2, 48 well microplate, Aerobic, at 37 (C), shaken=double orbital, continuous, 205cpm
By: DP on 9/4/2025
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 15 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| NAD and NADP cofactor biosynthesis global | 1 |
| Polyamine Metabolism | 1 |
| Siderophore Pyoverdine | 1 |
| Thiamin biosynthesis | 1 |
| Transport of Zinc | 1 |
| Type IV pilus | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Purine metabolism
- Pyrimidine metabolism
- Urea cycle and metabolism of amino groups
- Arginine and proline metabolism
- beta-Alanine metabolism
- Thiamine metabolism
- Drug metabolism - other enzymes
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| glyphosate degradation II | 1 | 1 | 1 |
| putrescine degradation V | 2 | 2 | 1 |
| putrescine degradation I | 2 | 1 | 1 |
| putrescine degradation IV | 3 | 2 | 1 |
| L-lysine degradation X | 6 | 5 | 1 |
| thiazole component of thiamine diphosphate biosynthesis II | 7 | 5 | 1 |
| L-lysine degradation I | 7 | 4 | 1 |
| superpathway of ornithine degradation | 8 | 5 | 1 |
| butanol and isobutanol biosynthesis (engineered) | 8 | 3 | 1 |
| superpathway of thiamine diphosphate biosynthesis II | 11 | 9 | 1 |
| superpathway of L-arginine, putrescine, and 4-aminobutanoate degradation | 11 | 6 | 1 |
| superpathway of L-arginine and L-ornithine degradation | 13 | 8 | 1 |
| superpathway of L-lysine degradation | 43 | 15 | 1 |