Experiment set8S563 for Erwinia tracheiphila SCR3

Compare to:

survival 4C, 24 hrs

200 most important genes:

  gene name fitness t score description  
LU632_RS10785 tagH -9.2 -9.0 type VI secretion system-associated FHA domain protein TagH compare
LU632_RS10790 tagF -8.6 -6.0 type VI secretion system-associated protein TagF compare
LU632_RS16120 -5.5 -20.3 citrate synthase compare
LU632_RS23980 tatC -5.4 -7.4 Sec-independent protein translocase subunit TatC compare
LU632_RS13085 dsbB -4.6 -7.5 disulfide bond formation protein DsbB compare
LU632_RS10270 -4.3 -3.0 glucan biosynthesis protein G compare
LU632_RS08350 -4.1 -3.9 YpfN family protein compare
LU632_RS07985 nuoF -4.1 -2.8 NADH-quinone oxidoreductase subunit NuoF compare
LU632_RS07965 -4.1 -5.5 NADH-quinone oxidoreductase subunit A compare
LU632_RS07995 nuoH -3.8 -2.6 NADH-quinone oxidoreductase subunit NuoH compare
LU632_RS02525 deoB -3.8 -10.4 phosphopentomutase compare
LU632_RS08035 -3.7 -6.6 glucan biosynthesis protein D compare
LU632_RS16485 arnA -3.7 -8.5 bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA compare
LU632_RS16490 arnC -3.6 -11.4 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
LU632_RS07970 -3.6 -4.3 NADH-quinone oxidoreductase subunit B compare
LU632_RS07975 nuoC -3.5 -6.7 NADH-quinone oxidoreductase subunit C/D compare
LU632_RS10275 mdoH -3.5 -4.1 glucans biosynthesis glucosyltransferase MdoH compare
LU632_RS08000 nuoI -3.3 -2.3 NADH-quinone oxidoreductase subunit NuoI compare
LU632_RS07980 nuoE -3.3 -2.2 NADH-quinone oxidoreductase subunit NuoE compare
LU632_RS02530 deoD -3.3 -9.3 purine-nucleoside phosphorylase compare
LU632_RS16495 arnB -3.2 -7.0 UDP-4-amino-4-deoxy-L-arabinose aminotransferase compare
LU632_RS08015 nuoL -3.2 -4.3 NADH-quinone oxidoreductase subunit L compare
LU632_RS07190 -3.2 -6.0 tRNA-Arg compare
LU632_RS02210 yraP -3.1 -7.0 divisome-associated lipoprotein YraP compare
LU632_RS22365 pgi -3.1 -13.9 glucose-6-phosphate isomerase compare
LU632_RS11350 -3.0 -8.9 AI-2E family transporter compare
LU632_RS08025 nuoN -3.0 -2.0 NADH-quinone oxidoreductase subunit NuoN compare
LU632_RS07775 aroC -2.9 -3.4 chorismate synthase compare
LU632_RS08020 nuoM -2.9 -3.9 NADH-quinone oxidoreductase subunit M compare
LU632_RS19665 ftsN -2.9 -2.8 cell division protein FtsN compare
LU632_RS09915 ompC -2.9 -2.8 porin OmpC compare
LU632_RS08005 nuoJ -2.9 -3.4 NADH-quinone oxidoreductase subunit J compare
LU632_RS08010 nuoK -2.9 -2.7 NADH-quinone oxidoreductase subunit NuoK compare
LU632_RS24880 pstS -2.9 -5.8 phosphate ABC transporter substrate-binding protein PstS compare
LU632_RS16480 -2.8 -2.7 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
LU632_RS15690 gshA -2.8 -2.4 glutamate--cysteine ligase compare
LU632_RS24035 metR -2.7 -5.6 HTH-type transcriptional regulator MetR compare
LU632_RS07990 nuoG -2.7 -5.4 NADH-quinone oxidoreductase subunit NuoG compare
LU632_RS14010 ldcA -2.7 -3.5 muramoyltetrapeptide carboxypeptidase compare
LU632_RS16090 odhB -2.6 -1.7 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
LU632_RS22150 typA -2.6 -5.2 ribosome-dependent GTPase TypA compare
LU632_RS01270 ulaR -2.6 -2.5 HTH-type transcriptional regulator UlaR compare
LU632_RS06635 zipA -2.6 -2.4 cell division protein ZipA compare
LU632_RS08885 -2.5 -5.4 ABC transporter ATP-binding protein compare
LU632_RS21165 greA -2.5 -5.2 transcription elongation factor GreA compare
LU632_RS09795 aroA -2.5 -7.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
LU632_RS24450 hdfR -2.4 -5.3 HTH-type transcriptional regulator HdfR compare
LU632_RS16990 bamE -2.4 -4.0 outer membrane protein assembly factor BamE compare
LU632_RS19305 -2.4 -3.3 zinc/cadmium/mercury/lead-transporting ATPase compare
LU632_RS14755 nagZ -2.4 -9.0 beta-N-acetylhexosaminidase compare
LU632_RS13455 cmoA -2.4 -2.7 carboxy-S-adenosyl-L-methionine synthase CmoA compare
LU632_RS08880 -2.4 -3.9 ABC transporter permease compare
LU632_RS01090 rnhA -2.4 -1.6 ribonuclease HI compare
LU632_RS08890 gndA -2.3 -1.6 NADP-dependent phosphogluconate dehydrogenase compare
LU632_RS06480 rpoS -2.3 -14.9 RNA polymerase sigma factor RpoS compare
LU632_RS21750 rnr -2.2 -3.7 ribonuclease R compare
LU632_RS17785 bamB -2.2 -2.5 outer membrane protein assembly factor BamB compare
LU632_RS22515 zntR -2.2 -3.9 Zn(2+)-responsive transcriptional regulator compare
LU632_RS02545 serB -2.2 -2.1 phosphoserine phosphatase compare
LU632_RS21350 -2.1 -4.6 DUF1043 family protein compare
LU632_RS18475 -2.1 -2.3 peroxiredoxin C compare
LU632_RS12755 -2.1 -10.0 anthranilate synthase component 1 compare
LU632_RS18005 -2.1 -3.3 O-antigen ligase family protein compare
LU632_RS06530 -2.0 -12.0 NupC/NupG family nucleoside CNT transporter compare
LU632_RS15415 rseB -2.0 -1.9 sigma-E factor regulatory protein RseB compare
LU632_RS18280 -2.0 -10.1 SmdB family multidrug efflux ABC transporter permease/ATP-binding protein compare
LU632_RS21085 secG -2.0 -3.6 preprotein translocase subunit SecG compare
LU632_RS22940 ompR -2.0 -4.2 two-component system response regulator OmpR compare
LU632_RS08315 bcp -2.0 -8.5 thioredoxin-dependent thiol peroxidase compare
LU632_RS16475 arnT -2.0 -5.0 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
LU632_RS14845 yceD -2.0 -2.7 23S rRNA accumulation protein YceD compare
LU632_RS11245 slyB -2.0 -3.4 outer membrane lipoprotein SlyB compare
LU632_RS06185 ptrA -2.0 -1.8 pitrilysin compare
LU632_RS02135 mpl -2.0 -4.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
LU632_RS10295 -1.9 -6.6 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
LU632_RS24260 trxA -1.9 -3.8 thioredoxin TrxA compare
LU632_RS02070 hflC -1.9 -1.3 protease modulator HflC compare
LU632_RS13460 cmoB -1.9 -4.1 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
LU632_RS20695 bacA -1.8 -3.4 undecaprenyl-diphosphate phosphatase compare
LU632_RS18420 -1.8 -1.2 LysE family translocator compare
LU632_RS17320 fruK -1.8 -2.6 1-phosphofructokinase compare
LU632_RS07855 dedD -1.8 -2.2 cell division protein DedD compare
LU632_RS08305 -1.8 -12.1 M48 family metallopeptidase compare
LU632_RS12765 trpCF -1.8 -6.8 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
LU632_RS15395 lepA -1.7 -3.9 translation elongation factor 4 compare
LU632_RS21855 cpxR -1.7 -8.1 envelope stress response regulator transcription factor CpxR compare
LU632_RS20090 pcnB -1.7 -3.8 polynucleotide adenylyltransferase PcnB compare
LU632_RS02050 miaA -1.7 -2.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LU632_RS12850 cls -1.7 -1.1 cardiolipin synthase compare
LU632_RS20545 metC -1.7 -6.8 cystathionine beta-lyase compare
LU632_RS01070 -1.7 -8.9 endonuclease/exonuclease/phosphatase family protein compare
LU632_RS02465 -1.7 -1.6 IS256 family transposase compare
LU632_RS02910 rsmH -1.7 -6.9 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
LU632_RS09085 pgl -1.7 -2.2 6-phosphogluconolactonase compare
LU632_RS06275 ppnN -1.7 -8.5 nucleotide 5'-monophosphate nucleosidase PpnN compare
LU632_RS12775 trpA -1.7 -4.5 tryptophan synthase subunit alpha compare
LU632_RS18350 tig -1.6 -4.8 trigger factor compare
LU632_RS22445 aroE -1.6 -2.7 shikimate dehydrogenase compare
LU632_RS08865 rfbC -1.6 -6.4 dTDP-4-dehydrorhamnose 3,5-epimerase compare
LU632_RS21240 mlaE -1.6 -4.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LU632_RS05410 mltC -1.6 -8.6 membrane-bound lytic murein transglycosylase MltC compare
LU632_RS08855 rfbD -1.6 -6.9 dTDP-4-dehydrorhamnose reductase compare
LU632_RS10625 -1.6 -2.5 N-acetylmuramoyl-L-alanine amidase compare
LU632_RS18285 -1.6 -7.6 SmdA family multidrug ABC transporter permease/ATP-binding protein compare
LU632_RS08190 apbE -1.5 -1.4 FAD:protein FMN transferase ApbE compare
LU632_RS22710 -1.5 -4.2 transcriptional regulator compare
LU632_RS19275 ftsE -1.5 -5.4 cell division ATP-binding protein FtsE compare
LU632_RS18995 proC -1.5 -2.9 pyrroline-5-carboxylate reductase compare
LU632_RS06260 -1.5 -3.5 DUF423 domain-containing protein compare
LU632_RS21930 -1.5 -3.3 glycosyltransferase compare
LU632_RS16880 -1.5 -1.4 DTW domain-containing protein compare
LU632_RS12770 trpB -1.5 -6.0 tryptophan synthase subunit beta compare
LU632_RS09245 -1.5 -3.9 L,D-transpeptidase family protein compare
LU632_RS06080 -1.5 -5.9 NADP(H)-dependent aldo-keto reductase compare
LU632_RS13520 cheY -1.4 -2.3 chemotaxis response regulator CheY compare
LU632_RS03330 -1.4 -9.1 LacI family DNA-binding transcriptional regulator compare
LU632_RS07860 cvpA -1.4 -4.6 colicin V production protein compare
LU632_RS08820 -1.4 -5.4 lipopolysaccharide biosynthesis protein compare
LU632_RS09620 -1.4 -3.4 inner membrane protein YbjM compare
LU632_RS06340 barA -1.4 -3.3 two-component sensor histidine kinase BarA compare
LU632_RS02270 -1.4 -3.0 hypothetical protein compare
LU632_RS12905 hns -1.4 -0.9 DNA-binding transcriptional regulator H-NS compare
LU632_RS24885 pstC -1.4 -2.8 phosphate ABC transporter permease PstC compare
LU632_RS25930 -1.4 -10.1 acyltransferase compare
LU632_RS09745 -1.4 -0.9 DNA translocase FtsK 4TM domain-containing protein compare
LU632_RS05455 -1.4 -5.5 YggT family protein compare
LU632_RS12465 -1.3 -8.1 Glu/Leu/Phe/Val dehydrogenase compare
LU632_RS09240 -1.3 -5.0 DUF1852 domain-containing protein compare
LU632_RS24895 pstB -1.3 -2.2 phosphate ABC transporter ATP-binding protein PstB compare
LU632_RS22410 metA -1.3 -5.2 homoserine O-succinyltransferase compare
LU632_RS22375 lysC -1.3 -3.5 lysine-sensitive aspartokinase 3 compare
LU632_RS13610 -1.3 -3.0 glutamine amidotransferase compare
LU632_RS22865 aroB -1.3 -1.9 3-dehydroquinate synthase compare
LU632_RS11510 -1.3 -8.1 peptide ABC transporter substrate-binding protein compare
LU632_RS17275 fghA -1.3 -5.6 S-formylglutathione hydrolase compare
LU632_RS12760 trpD -1.3 -5.5 bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD compare
LU632_RS16945 rluD -1.3 -6.2 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
LU632_RS06675 cysM -1.2 -2.0 cysteine synthase CysM compare
LU632_RS23275 -1.2 -7.4 Na+/H+ antiporter compare
LU632_RS12970 sppA -1.2 -7.4 signal peptide peptidase SppA compare
LU632_RS16560 -1.2 -1.5 hypothetical protein compare
LU632_RS19640 metB -1.2 -4.7 cystathionine gamma-synthase compare
LU632_RS17370 -1.2 -1.8 hypothetical protein compare
LU632_RS05065 -1.2 -2.5 helix-turn-helix domain-containing protein compare
LU632_RS26015 -1.2 -4.4 hypothetical protein compare
LU632_RS19460 uspA -1.2 -1.8 universal stress protein UspA compare
LU632_RS08750 asmA -1.2 -5.3 outer membrane assembly protein AsmA compare
LU632_RS13950 ychF -1.2 -2.2 redox-regulated ATPase YchF compare
LU632_RS20550 -1.2 -5.4 DedA family protein compare
LU632_RS04300 -1.2 -2.3 IS3 family transposase compare
LU632_RS21880 secB -1.1 -2.6 protein-export chaperone SecB compare
LU632_RS09420 -1.1 -2.2 hypothetical protein compare
LU632_RS16130 -1.1 -1.4 helix-turn-helix domain-containing protein compare
LU632_RS24890 pstA -1.1 -1.7 phosphate ABC transporter permease PstA compare
LU632_RS21235 mlaD -1.1 -4.6 outer membrane lipid asymmetry maintenance protein MlaD compare
LU632_RS10250 -1.1 -1.6 phospholipase D family protein compare
LU632_RS00215 -1.1 -5.3 N-acetylmuramoyl-L-alanine amidase compare
LU632_RS23785 -1.1 -2.3 hypothetical protein compare
LU632_RS21710 rplI -1.1 -2.4 50S ribosomal protein L9 compare
LU632_RS21365 mdh -1.1 -5.2 malate dehydrogenase compare
LU632_RS11220 rnt -1.1 -4.4 ribonuclease T compare
LU632_RS16935 clpB -1.1 -7.8 ATP-dependent chaperone ClpB compare
LU632_RS03515 -1.1 -2.0 TraR/DksA family transcriptional regulator compare
LU632_RS16415 tatE -1.1 -1.0 twin-arginine translocase subunit TatE compare
LU632_RS12710 -1.1 -1.2 DUF2498 family protein compare
LU632_RS09180 moaB -1.1 -3.0 molybdenum cofactor biosynthesis protein B compare
LU632_RS09325 bglX -1.1 -7.1 beta-glucosidase BglX compare
LU632_RS18120 -1.1 -2.2 hypothetical protein compare
LU632_RS13260 -1.1 -4.7 GAF domain-containing protein compare
LU632_RS13255 proQ -1.1 -3.1 RNA chaperone ProQ compare
LU632_RS12875 oppB -1.1 -4.6 oligopeptide ABC transporter permease OppB compare
LU632_RS15385 rnc -1.1 -1.4 ribonuclease III compare
LU632_RS12560 -1.1 -1.3 DUF2498 family protein compare
LU632_RS20495 -1.1 -1.5 hypothetical protein compare
LU632_RS02575 sltY -1.0 -7.2 murein transglycosylase compare
LU632_RS23035 -1.0 -1.0 helix-turn-helix domain-containing protein compare
LU632_RS09560 gsiB -1.0 -6.3 glutathione ABC transporter substrate-binding protein GsiB compare
LU632_RS11660 -1.0 -3.5 sugar transporter compare
LU632_RS06100 -1.0 -1.1 hypothetical protein compare
LU632_RS04810 -1.0 -1.4 hypothetical protein compare
LU632_RS02515 deoC -1.0 -3.7 deoxyribose-phosphate aldolase compare
LU632_RS10000 -1.0 -6.7 Lon protease family protein compare
LU632_RS06110 ptsP -1.0 -6.7 phosphoenolpyruvate--protein phosphotransferase compare
LU632_RS00590 -1.0 -1.9 chaperone-modulator protein CbpM compare
LU632_RS23505 -1.0 -1.1 IS256 family transposase compare
LU632_RS09565 gsiC -1.0 -4.5 glutathione ABC transporter permease GsiC compare
LU632_RS05090 -1.0 -4.6 contact-dependent growth inhibition system immunity protein compare
LU632_RS08130 -1.0 -2.7 nicotinamide mononucleotide deamidase-related protein YfaY compare
LU632_RS18440 hutX -1.0 -2.0 heme utilization cystosolic carrier protein HutX compare
LU632_RS06335 -1.0 -3.9 glycerate kinase compare
LU632_RS25310 yidD -1.0 -2.7 membrane protein insertion efficiency factor YidD compare
LU632_RS01180 -1.0 -1.0 hypothetical protein compare
LU632_RS05460 -1.0 -3.3 YggS family pyridoxal phosphate-dependent enzyme compare
LU632_RS06550 -1.0 -2.1 putative DNA-binding transcriptional regulator compare
LU632_RS03490 -1.0 -2.1 hypothetical protein compare
LU632_RS05250 -1.0 -2.1 hypothetical protein compare
LU632_RS12865 -1.0 -5.4 ABC transporter ATP-binding protein compare
LU632_RS20805 -1.0 -1.0 AlpA family transcriptional regulator compare
LU632_RS15635 -1.0 -2.6 regulatory phage cox family protein compare
LU632_RS15135 -1.0 -2.4 YfdQ family protein compare


Specific Phenotypes

For 15 genes in this experiment