Experiment set8S562 for Erwinia tracheiphila SCR3

Compare to:

survival 4C, 24 hrs

200 most important genes:

  gene name fitness t score description  
LU632_RS10785 tagH -8.8 -10.5 type VI secretion system-associated FHA domain protein TagH compare
LU632_RS10790 tagF -8.2 -8.0 type VI secretion system-associated protein TagF compare
LU632_RS16120 -6.0 -16.8 citrate synthase compare
LU632_RS23980 tatC -5.3 -7.3 Sec-independent protein translocase subunit TatC compare
LU632_RS13085 dsbB -5.1 -5.0 disulfide bond formation protein DsbB compare
LU632_RS08350 -4.2 -2.9 YpfN family protein compare
LU632_RS08885 -4.2 -5.7 ABC transporter ATP-binding protein compare
LU632_RS10270 -4.1 -2.8 glucan biosynthesis protein G compare
LU632_RS22365 pgi -4.0 -12.4 glucose-6-phosphate isomerase compare
LU632_RS07965 -4.0 -2.7 NADH-quinone oxidoreductase subunit A compare
LU632_RS08035 -3.7 -3.6 glucan biosynthesis protein D compare
LU632_RS07995 nuoH -3.6 -2.5 NADH-quinone oxidoreductase subunit NuoH compare
LU632_RS07985 nuoF -3.6 -4.8 NADH-quinone oxidoreductase subunit NuoF compare
LU632_RS16490 arnC -3.6 -9.9 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
LU632_RS07975 nuoC -3.5 -4.2 NADH-quinone oxidoreductase subunit C/D compare
LU632_RS16485 arnA -3.4 -8.1 bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA compare
LU632_RS10275 mdoH -3.3 -3.2 glucans biosynthesis glucosyltransferase MdoH compare
LU632_RS07970 -3.3 -4.5 NADH-quinone oxidoreductase subunit B compare
LU632_RS06635 zipA -3.2 -2.2 cell division protein ZipA compare
LU632_RS15690 gshA -3.2 -2.1 glutamate--cysteine ligase compare
LU632_RS07980 nuoE -3.1 -2.1 NADH-quinone oxidoreductase subunit NuoE compare
LU632_RS08000 nuoI -3.1 -2.1 NADH-quinone oxidoreductase subunit NuoI compare
LU632_RS07190 -3.0 -5.2 tRNA-Arg compare
LU632_RS11350 -2.9 -8.5 AI-2E family transporter compare
LU632_RS08015 nuoL -2.9 -4.4 NADH-quinone oxidoreductase subunit L compare
LU632_RS08005 nuoJ -2.9 -2.8 NADH-quinone oxidoreductase subunit J compare
LU632_RS16495 arnB -2.9 -6.7 UDP-4-amino-4-deoxy-L-arabinose aminotransferase compare
LU632_RS08010 nuoK -2.8 -1.9 NADH-quinone oxidoreductase subunit NuoK compare
LU632_RS07990 nuoG -2.8 -2.8 NADH-quinone oxidoreductase subunit NuoG compare
LU632_RS20090 pcnB -2.8 -4.1 polynucleotide adenylyltransferase PcnB compare
LU632_RS16990 bamE -2.8 -3.2 outer membrane protein assembly factor BamE compare
LU632_RS24450 hdfR -2.8 -4.8 HTH-type transcriptional regulator HdfR compare
LU632_RS16415 tatE -2.8 -1.5 twin-arginine translocase subunit TatE compare
LU632_RS21350 -2.8 -5.6 DUF1043 family protein compare
LU632_RS08025 nuoN -2.8 -1.9 NADH-quinone oxidoreductase subunit NuoN compare
LU632_RS09915 ompC -2.7 -2.7 porin OmpC compare
LU632_RS08880 -2.7 -3.5 ABC transporter permease compare
LU632_RS16480 -2.7 -1.9 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
LU632_RS08020 nuoM -2.7 -3.7 NADH-quinone oxidoreductase subunit M compare
LU632_RS22150 typA -2.7 -3.6 ribosome-dependent GTPase TypA compare
LU632_RS18475 -2.7 -2.4 peroxiredoxin C compare
LU632_RS09085 pgl -2.7 -1.8 6-phosphogluconolactonase compare
LU632_RS02210 yraP -2.7 -6.6 divisome-associated lipoprotein YraP compare
LU632_RS14010 ldcA -2.7 -2.5 muramoyltetrapeptide carboxypeptidase compare
LU632_RS19665 ftsN -2.6 -2.5 cell division protein FtsN compare
LU632_RS21855 cpxR -2.5 -8.7 envelope stress response regulator transcription factor CpxR compare
LU632_RS16090 odhB -2.5 -1.6 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
LU632_RS09620 -2.4 -3.8 inner membrane protein YbjM compare
LU632_RS09795 aroA -2.4 -6.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
LU632_RS06340 barA -2.4 -4.0 two-component sensor histidine kinase BarA compare
LU632_RS13460 cmoB -2.4 -3.8 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
LU632_RS17275 fghA -2.4 -6.8 S-formylglutathione hydrolase compare
LU632_RS21750 rnr -2.3 -3.1 ribonuclease R compare
LU632_RS22710 -2.3 -4.5 transcriptional regulator compare
LU632_RS07775 aroC -2.3 -2.9 chorismate synthase compare
LU632_RS21445 mreC -2.3 -4.0 rod shape-determining protein MreC compare
LU632_RS01090 rnhA -2.3 -1.5 ribonuclease HI compare
LU632_RS15640 -2.3 -1.5 helix-turn-helix domain-containing protein compare
LU632_RS24880 pstS -2.3 -4.4 phosphate ABC transporter substrate-binding protein PstS compare
LU632_RS22515 zntR -2.2 -3.3 Zn(2+)-responsive transcriptional regulator compare
LU632_RS19305 -2.2 -3.3 zinc/cadmium/mercury/lead-transporting ATPase compare
LU632_RS24260 trxA -2.2 -3.5 thioredoxin TrxA compare
LU632_RS16935 clpB -2.2 -11.9 ATP-dependent chaperone ClpB compare
LU632_RS21165 greA -2.1 -4.5 transcription elongation factor GreA compare
LU632_RS13455 cmoA -2.1 -2.9 carboxy-S-adenosyl-L-methionine synthase CmoA compare
LU632_RS09245 -2.1 -4.3 L,D-transpeptidase family protein compare
LU632_RS08305 -2.1 -12.6 M48 family metallopeptidase compare
LU632_RS06185 ptrA -2.1 -1.4 pitrilysin compare
LU632_RS02525 deoB -2.0 -9.6 phosphopentomutase compare
LU632_RS21085 secG -2.0 -3.3 preprotein translocase subunit SecG compare
LU632_RS08060 -2.0 -1.8 phage protease compare
LU632_RS06275 ppnN -2.0 -8.7 nucleotide 5'-monophosphate nucleosidase PpnN compare
LU632_RS08850 rfbB -2.0 -2.2 dTDP-glucose 4,6-dehydratase compare
LU632_RS13255 proQ -2.0 -5.0 RNA chaperone ProQ compare
LU632_RS17785 bamB -2.0 -2.3 outer membrane protein assembly factor BamB compare
LU632_RS08865 rfbC -2.0 -6.6 dTDP-4-dehydrorhamnose 3,5-epimerase compare
LU632_RS02135 mpl -2.0 -4.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
LU632_RS08855 rfbD -2.0 -7.1 dTDP-4-dehydrorhamnose reductase compare
LU632_RS11100 -2.0 -1.7 integrase core domain-containing protein compare
LU632_RS11245 slyB -2.0 -2.8 outer membrane lipoprotein SlyB compare
LU632_RS02050 miaA -1.9 -1.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LU632_RS02910 rsmH -1.9 -7.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
LU632_RS06615 ptsI -1.9 -6.3 phosphoenolpyruvate-protein phosphotransferase PtsI compare
LU632_RS15415 rseB -1.9 -1.3 sigma-E factor regulatory protein RseB compare
LU632_RS02545 serB -1.9 -2.2 phosphoserine phosphatase compare
LU632_RS16475 arnT -1.9 -4.1 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
LU632_RS21240 mlaE -1.9 -4.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LU632_RS18995 proC -1.8 -3.0 pyrroline-5-carboxylate reductase compare
LU632_RS15395 lepA -1.8 -3.3 translation elongation factor 4 compare
LU632_RS24035 metR -1.8 -4.6 HTH-type transcriptional regulator MetR compare
LU632_RS22940 ompR -1.8 -4.4 two-component system response regulator OmpR compare
LU632_RS21245 mlaF -1.8 -7.6 phospholipid ABC transporter ATP-binding protein MlaF compare
LU632_RS06110 ptsP -1.8 -9.8 phosphoenolpyruvate--protein phosphotransferase compare
LU632_RS02070 hflC -1.8 -1.2 protease modulator HflC compare
LU632_RS03330 -1.8 -10.0 LacI family DNA-binding transcriptional regulator compare
LU632_RS11510 -1.7 -9.6 peptide ABC transporter substrate-binding protein compare
LU632_RS21515 fis -1.7 -5.5 DNA-binding transcriptional regulator Fis compare
LU632_RS18005 -1.7 -3.1 O-antigen ligase family protein compare
LU632_RS01270 ulaR -1.7 -2.9 HTH-type transcriptional regulator UlaR compare
LU632_RS21930 -1.7 -3.6 glycosyltransferase compare
LU632_RS05510 speA -1.7 -1.8 biosynthetic arginine decarboxylase compare
LU632_RS01070 -1.7 -9.8 endonuclease/exonuclease/phosphatase family protein compare
LU632_RS14755 nagZ -1.7 -6.6 beta-N-acetylhexosaminidase compare
LU632_RS24890 pstA -1.7 -2.1 phosphate ABC transporter permease PstA compare
LU632_RS08820 -1.7 -5.5 lipopolysaccharide biosynthesis protein compare
LU632_RS00960 -1.7 -3.1 HesA/MoeB/ThiF family protein compare
LU632_RS18420 -1.7 -1.1 LysE family translocator compare
LU632_RS18350 tig -1.7 -4.3 trigger factor compare
LU632_RS20545 metC -1.6 -5.2 cystathionine beta-lyase compare
LU632_RS09565 gsiC -1.6 -5.4 glutathione ABC transporter permease GsiC compare
LU632_RS24885 pstC -1.6 -3.1 phosphate ABC transporter permease PstC compare
LU632_RS05410 mltC -1.6 -8.1 membrane-bound lytic murein transglycosylase MltC compare
LU632_RS09555 gsiA -1.6 -10.5 glutathione ABC transporter ATP-binding protein GsiA compare
LU632_RS12970 sppA -1.6 -8.6 signal peptide peptidase SppA compare
LU632_RS07855 dedD -1.6 -2.0 cell division protein DedD compare
LU632_RS09325 bglX -1.6 -9.3 beta-glucosidase BglX compare
LU632_RS25930 -1.6 -11.6 acyltransferase compare
LU632_RS23845 -1.6 -2.2 DUF1493 family protein compare
LU632_RS05460 -1.6 -5.9 YggS family pyridoxal phosphate-dependent enzyme compare
LU632_RS05065 -1.6 -2.8 helix-turn-helix domain-containing protein compare
LU632_RS22445 aroE -1.6 -2.3 shikimate dehydrogenase compare
LU632_RS15385 rnc -1.6 -1.7 ribonuclease III compare
LU632_RS11450 -1.5 -3.1 hypothetical protein compare
LU632_RS09240 -1.5 -5.1 DUF1852 domain-containing protein compare
LU632_RS19275 ftsE -1.5 -6.4 cell division ATP-binding protein FtsE compare
LU632_RS06335 -1.5 -4.9 glycerate kinase compare
LU632_RS20695 bacA -1.5 -2.9 undecaprenyl-diphosphate phosphatase compare
LU632_RS08875 -1.5 -3.6 hypothetical protein compare
LU632_RS11345 -1.5 -2.1 transposase compare
LU632_RS22410 metA -1.5 -5.2 homoserine O-succinyltransferase compare
LU632_RS08890 gndA -1.5 -2.2 NADP-dependent phosphogluconate dehydrogenase compare
LU632_RS13260 -1.4 -5.4 GAF domain-containing protein compare
LU632_RS21710 rplI -1.4 -2.6 50S ribosomal protein L9 compare
LU632_RS09570 gsiD -1.4 -7.1 glutathione ABC transporter permease GsiD compare
LU632_RS16665 -1.4 -1.2 hypothetical protein compare
LU632_RS09560 gsiB -1.4 -7.7 glutathione ABC transporter substrate-binding protein GsiB compare
LU632_RS08750 asmA -1.4 -6.3 outer membrane assembly protein AsmA compare
LU632_RS12465 -1.4 -7.9 Glu/Leu/Phe/Val dehydrogenase compare
LU632_RS22295 zur -1.4 -4.8 zinc uptake transcriptional repressor Zur compare
LU632_RS19860 -1.4 -3.0 YaeP family protein compare
LU632_RS12710 -1.4 -1.3 DUF2498 family protein compare
LU632_RS09235 -1.4 -4.8 methionine synthase compare
LU632_RS05985 recJ -1.4 -2.1 single-stranded-DNA-specific exonuclease RecJ compare
LU632_RS18285 -1.3 -6.4 SmdA family multidrug ABC transporter permease/ATP-binding protein compare
LU632_RS02065 hflK -1.3 -0.9 FtsH protease activity modulator HflK compare
LU632_RS00215 -1.3 -5.4 N-acetylmuramoyl-L-alanine amidase compare
LU632_RS04740 -1.3 -0.8 DNA topoisomerase IV subunit B compare
LU632_RS19460 uspA -1.3 -1.8 universal stress protein UspA compare
LU632_RS16555 -1.3 -2.1 hypothetical protein compare
LU632_RS11040 -1.3 -8.0 FAD-binding oxidoreductase compare
LU632_RS09745 -1.3 -0.8 DNA translocase FtsK 4TM domain-containing protein compare
LU632_RS12875 oppB -1.3 -5.1 oligopeptide ABC transporter permease OppB compare
LU632_RS22715 fkpA -1.3 -4.2 FKBP-type peptidyl-prolyl cis-trans isomerase compare
LU632_RS26110 -1.3 -4.9 ParA family protein compare
LU632_RS21225 mlaB -1.3 -3.1 lipid asymmetry maintenance protein MlaB compare
LU632_RS02575 sltY -1.3 -8.1 murein transglycosylase compare
LU632_RS22375 lysC -1.3 -2.7 lysine-sensitive aspartokinase 3 compare
LU632_RS21365 mdh -1.3 -5.3 malate dehydrogenase compare
LU632_RS17320 fruK -1.3 -2.9 1-phosphofructokinase compare
LU632_RS14640 cobB -1.3 -2.8 NAD-dependent protein deacylase compare
LU632_RS19270 ftsX -1.3 -8.1 permease-like cell division protein FtsX compare
LU632_RS12905 hns -1.3 -0.8 DNA-binding transcriptional regulator H-NS compare
LU632_RS19640 metB -1.2 -4.4 cystathionine gamma-synthase compare
LU632_RS21235 mlaD -1.2 -4.8 outer membrane lipid asymmetry maintenance protein MlaD compare
LU632_RS08130 -1.2 -3.0 nicotinamide mononucleotide deamidase-related protein YfaY compare
LU632_RS21900 -1.2 -5.4 divergent polysaccharide deacetylase family protein compare
LU632_RS20495 -1.2 -1.4 hypothetical protein compare
LU632_RS07300 mlaA -1.2 -5.2 phospholipid-binding lipoprotein MlaA compare
LU632_RS23310 gltP -1.2 -0.7 glutamate/aspartate:proton symporter GltP compare
LU632_RS21880 secB -1.2 -2.4 protein-export chaperone SecB compare
LU632_RS01555 -1.2 -3.8 type II toxin-antitoxin system HicB family antitoxin compare
LU632_RS23275 -1.2 -6.9 Na+/H+ antiporter compare
LU632_RS10005 matP -1.2 -4.2 macrodomain Ter protein MatP compare
LU632_RS12865 -1.2 -6.1 ABC transporter ATP-binding protein compare
LU632_RS08280 upp -1.2 -1.9 uracil phosphoribosyltransferase compare
LU632_RS21230 mlaC -1.2 -3.8 phospholipid-binding protein MlaC compare
LU632_RS18560 -1.2 -2.4 hypothetical protein compare
LU632_RS06255 -1.1 -6.2 transcriptional regulator GcvA compare
LU632_RS11220 rnt -1.1 -4.2 ribonuclease T compare
LU632_RS12780 -1.1 -1.8 BON domain-containing protein compare
LU632_RS21895 envC -1.1 -6.6 murein hydrolase activator EnvC compare
LU632_RS07010 -1.1 -2.2 lambda phage CII family protein compare
LU632_RS00950 -1.1 -5.6 thiazole synthase compare
LU632_RS15835 sbcB -1.1 -4.6 exodeoxyribonuclease I compare
LU632_RS02730 rsmA -1.1 -1.9 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
LU632_RS07860 cvpA -1.1 -3.5 colicin V production protein compare
LU632_RS12850 cls -1.1 -0.7 cardiolipin synthase compare
LU632_RS12870 oppC -1.1 -4.8 oligopeptide ABC transporter permease OppC compare
LU632_RS10295 -1.1 -3.2 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
LU632_RS00835 -1.1 -5.5 DeoR/GlpR family DNA-binding transcription regulator compare
LU632_RS18280 -1.1 -5.8 SmdB family multidrug efflux ABC transporter permease/ATP-binding protein compare
LU632_RS17610 yejK -1.1 -3.2 nucleoid-associated protein YejK compare
LU632_RS25030 -1.0 -1.7 hypothetical protein compare
LU632_RS06480 rpoS -1.0 -7.2 RNA polymerase sigma factor RpoS compare
LU632_RS25005 -1.0 -2.2 hypothetical protein compare
LU632_RS12860 oppF -1.0 -4.5 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF compare
LU632_RS02820 -1.0 -3.2 DedA family protein compare
LU632_RS19990 -1.0 -1.9 DUF3461 family protein compare
LU632_RS20550 -1.0 -4.6 DedA family protein compare
LU632_RS25310 yidD -1.0 -2.7 membrane protein insertion efficiency factor YidD compare


Specific Phenotypes

For 21 genes in this experiment