Experiment set8S562 for Erwinia tracheiphila SCR3

survival 4C, 24 hrs

Group: survival
Media:
Culturing: Erwinia_SCR3_ML3
By: Milo on 05/05/2025

Specific Phenotypes

For 21 genes in this experiment

SEED Subsystems

Subsystem	#Specific
ABC transporter dipeptide (TC 3.A.1.5.2)	2
2-phosphoglycolate salvage	1
Beta-Glucoside Metabolism	1
Chitin and N-acetylglucosamine utilization	1
Glycine cleavage system	1
Glycolate, glyoxylate interconversions	1
Lipid A modifications	1
Orphan regulatory proteins	1
Photorespiration (oxidative C2 cycle)	1
Protein chaperones	1
Proteolysis in bacteria, ATP-dependent	1
Thiamin biosynthesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Glutamate metabolism
• Arginine and proline metabolism
• Nitrogen metabolism
• Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
• Lysine degradation
• Cyanoamino acid metabolism
• D-Glutamine and D-glutamate metabolism
• Starch and sucrose metabolism
• Peptidoglycan biosynthesis
• Glyoxylate and dicarboxylate metabolism
• Biotin metabolism
• Phenylpropanoid biosynthesis

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
L-glutamate degradation I	1	1	1
L-glutamate biosynthesis III	1	1	1
adenosine nucleotides degradation III	1	1	1
L-glutamate degradation X	1	1	1
L-glutamate biosynthesis II	1	1	1
neolinustatin bioactivation	3	2	2
linustatin bioactivation	4	2	2
lotaustralin degradation	2	1	1
linamarin degradation	2	1	1
L-alanine degradation II (to D-lactate)	3	2	1
ethene biosynthesis IV (engineered)	3	1	1
cellulose degradation II (fungi)	3	1	1
L-glutamate and L-glutamine biosynthesis	7	6	2
GABA shunt I	4	2	1
coumarin biosynthesis (via 2-coumarate)	5	2	1
thiazole component of thiamine diphosphate biosynthesis I	6	6	1
α-tomatine degradation	6	1	1
lipoprotein posttranslational modification (Gram-negative bacteria)	7	6	1
thiazole component of thiamine diphosphate biosynthesis II	7	5	1
L-glutamate degradation XI (reductive Stickland reaction)	7	2	1
4-aminobutanoate degradation V	7	1	1
photorespiration I	9	5	1
photorespiration III	9	5	1
superpathway of thiamine diphosphate biosynthesis I	10	10	1
peptidoglycan recycling II	10	7	1
photorespiration II	10	6	1
L-glutamate degradation V (via hydroxyglutarate)	10	4	1
superpathway of thiamine diphosphate biosynthesis II	11	9	1
peptidoglycan recycling I	14	14	1
firefly bioluminescence	14	2	1
methylaspartate cycle	19	9	1