Experiment set8S557 for Erwinia tracheiphila SCR3

200 most important genes:

gene	name	fitness	t score	description
LU632_RS23980	tatC	-2.8	-9.8	Sec-independent protein translocase subunit TatC
LU632_RS08035		-2.7	-9.2	glucan biosynthesis protein D
LU632_RS16090	odhB	-2.7	-1.8	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase
LU632_RS01090	rnhA	-2.5	-1.6	ribonuclease HI
LU632_RS19305		-2.4	-4.3	zinc/cadmium/mercury/lead-transporting ATPase
LU632_RS06635	zipA	-2.2	-3.4	cell division protein ZipA
LU632_RS10910		-2.0	-2.9	hypothetical protein
LU632_RS16880		-1.9	-1.6	DTW domain-containing protein
LU632_RS22365	pgi	-1.7	-10.4	glucose-6-phosphate isomerase
LU632_RS06465	surE	-1.6	-2.4	5'/3'-nucleotidase SurE
LU632_RS15690	gshA	-1.5	-1.8	glutamate--cysteine ligase
LU632_RS22150	typA	-1.5	-4.3	ribosome-dependent GTPase TypA
LU632_RS02050	miaA	-1.5	-2.4	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA
LU632_RS22515	zntR	-1.5	-3.9	Zn(2+)-responsive transcriptional regulator
LU632_RS19990		-1.5	-2.9	DUF3461 family protein
LU632_RS09085	pgl	-1.5	-2.2	6-phosphogluconolactonase
LU632_RS03515		-1.4	-2.6	TraR/DksA family transcriptional regulator
LU632_RS10275	mdoH	-1.4	-5.2	glucans biosynthesis glucosyltransferase MdoH
LU632_RS14845	yceD	-1.3	-1.6	23S rRNA accumulation protein YceD
LU632_RS05985	recJ	-1.3	-2.6	single-stranded-DNA-specific exonuclease RecJ
LU632_RS13455	cmoA	-1.3	-2.5	carboxy-S-adenosyl-L-methionine synthase CmoA
LU632_RS18500	tgt	-1.3	-3.3	tRNA guanosine(34) transglycosylase Tgt
LU632_RS09795	aroA	-1.3	-5.8	3-phosphoshikimate 1-carboxyvinyltransferase
LU632_RS21710	rplI	-1.2	-2.6	50S ribosomal protein L9
LU632_RS16945	rluD	-1.2	-6.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD
LU632_RS25155		-1.2	-1.4	phage tail assembly protein
LU632_RS19665	ftsN	-1.1	-2.5	cell division protein FtsN
LU632_RS18585		-1.1	-1.8	DUF3251 domain-containing protein
LU632_RS10270		-1.1	-2.6	glucan biosynthesis protein G
LU632_RS25485		-1.1	-1.9	hypothetical protein
LU632_RS01790		-1.1	-1.5	hypothetical protein
LU632_RS14010	ldcA	-1.1	-2.7	muramoyltetrapeptide carboxypeptidase
LU632_RS12905	hns	-1.1	-0.9	DNA-binding transcriptional regulator H-NS
LU632_RS01180		-1.1	-1.2	hypothetical protein
LU632_RS15415	rseB	-1.1	-2.4	sigma-E factor regulatory protein RseB
LU632_RS14710		-1.0	-1.5	antitermination protein
LU632_RS12325		-1.0	-2.3	H-NS histone family protein
LU632_RS13460	cmoB	-1.0	-3.2	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB
LU632_RS19580	fabR	-1.0	-0.7	HTH-type transcriptional repressor FabR
LU632_RS02165		-1.0	-3.3	hypothetical protein
LU632_RS05025		-1.0	-0.8	TIGR03749 family integrating conjugative element protein
LU632_RS20980	nrdG	-1.0	-2.1	anaerobic ribonucleoside-triphosphate reductase-activating protein
LU632_RS16990	bamE	-1.0	-2.4	outer membrane protein assembly factor BamE
LU632_RS15640		-1.0	-1.2	helix-turn-helix domain-containing protein
LU632_RS16480		-1.0	-2.6	4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase
LU632_RS05120		-1.0	-1.2	TIGR03758 family integrating conjugative element protein
LU632_RS18350	tig	-1.0	-3.3	trigger factor
LU632_RS16555		-1.0	-1.4	hypothetical protein
LU632_RS02210	yraP	-1.0	-3.8	divisome-associated lipoprotein YraP
LU632_RS10595		-0.9	-2.3	tail fiber assembly protein
LU632_RS12575		-0.9	-1.3	hypothetical protein
LU632_RS03600	lysB	-0.9	-2.0	Rz-like lysis system protein LysB
LU632_RS21165	greA	-0.9	-2.9	transcription elongation factor GreA
LU632_RS07385		-0.9	-2.4	recombinase family protein
LU632_RS13340		-0.9	-1.4	hypothetical protein
LU632_RS02545	serB	-0.9	-2.2	phosphoserine phosphatase
LU632_RS24450	hdfR	-0.9	-3.2	HTH-type transcriptional regulator HdfR
LU632_RS08060		-0.9	-1.2	phage protease
LU632_RS06525		-0.9	-2.0	Nramp family divalent metal transporter
LU632_RS11535		-0.9	-3.1	YcjF family protein
LU632_RS22025		-0.9	-2.5	hypothetical protein
LU632_RS07190		-0.9	-2.7	tRNA-Arg
LU632_RS20260		-0.9	-1.3	DUF4113 domain-containing protein
LU632_RS06985		-0.9	-1.0	hypothetical protein
LU632_RS11625		-0.9	-2.4	antibiotic biosynthesis monooxygenase
LU632_RS20330		-0.9	-0.9	IS6 family transposase
LU632_RS04810		-0.9	-1.0	hypothetical protein
LU632_RS24150		-0.8	-1.3	lipoprotein
LU632_RS15045		-0.8	-2.4	hypothetical protein
LU632_RS15480		-0.8	-1.9	hypothetical protein
LU632_RS15385	rnc	-0.8	-1.3	ribonuclease III
LU632_RS06100		-0.8	-0.9	hypothetical protein
LU632_RS24290		-0.8	-2.1	type III effector protein
LU632_RS05140		-0.8	-1.8	TIGR03749 family integrating conjugative element protein
LU632_RS13520	cheY	-0.8	-1.4	chemotaxis response regulator CheY
LU632_RS16575		-0.8	-1.7	hypothetical protein
LU632_RS16100		-0.8	-2.1	succinate dehydrogenase iron-sulfur subunit
LU632_RS07775	aroC	-0.8	-2.0	chorismate synthase
LU632_RS25930		-0.8	-5.8	acyltransferase
LU632_RS11345		-0.8	-1.3	transposase
LU632_RS12800		-0.8	-2.2	envelope biogenesis factor ElyC
LU632_RS25030		-0.8	-1.4	hypothetical protein
LU632_RS05225		-0.8	-1.7	hypothetical protein
LU632_RS17610	yejK	-0.8	-2.7	nucleoid-associated protein YejK
LU632_RS26010		-0.7	-4.3	head-tail adaptor
LU632_RS01270	ulaR	-0.7	-2.1	HTH-type transcriptional regulator UlaR
LU632_RS00435	sctF	-0.7	-0.8	type III secretion system needle filament subunit SctF
LU632_RS12755		-0.7	-4.4	anthranilate synthase component 1
LU632_RS01320	crcB	-0.7	-1.6	fluoride efflux transporter CrcB
LU632_RS13335		-0.7	-1.6	hypothetical protein
LU632_RS13305		-0.7	-1.6	DNA polymerase III subunit theta
LU632_RS16130		-0.7	-1.0	helix-turn-helix domain-containing protein
LU632_RS20375		-0.7	-2.3	hypothetical protein
LU632_RS22785		-0.7	-1.8	YheU family protein
LU632_RS05250		-0.7	-1.7	hypothetical protein
LU632_RS05020		-0.7	-1.5	TIGR03746 family integrating conjugative element protein
LU632_RS12725		-0.7	-2.2	YciK family oxidoreductase
LU632_RS21860	cpxA	-0.7	-3.6	envelope stress sensor histidine kinase CpxA
LU632_RS24995		-0.7	-1.1	hypothetical protein
LU632_RS03580		-0.7	-2.1	head completion/stabilization protein
LU632_RS08645		-0.7	-1.1	T3SS effector OspC family protein
LU632_RS07860	cvpA	-0.7	-2.7	colicin V production protein
LU632_RS24445		-0.7	-0.9	DUF413 domain-containing protein
LU632_RS14200		-0.7	-2.4	hypothetical protein
LU632_RS06235	csdE	-0.7	-2.4	cysteine desulfurase sulfur acceptor subunit CsdE
LU632_RS07215		-0.7	-1.9	antitermination protein Q
LU632_RS19705	glpK	-0.7	-2.6	glycerol kinase GlpK
LU632_RS00215		-0.7	-2.9	N-acetylmuramoyl-L-alanine amidase
LU632_RS20960	ridA	-0.7	-1.9	2-iminobutanoate/2-iminopropanoate deaminase
LU632_RS00590		-0.7	-1.4	chaperone-modulator protein CbpM
LU632_RS12690		-0.7	-2.0	N-acetylmuramoyl-L-alanine amidase
LU632_RS04205		-0.7	-0.8	hypothetical protein
LU632_RS10625		-0.7	-1.3	N-acetylmuramoyl-L-alanine amidase
LU632_RS26110		-0.7	-2.7	ParA family protein
LU632_RS11450		-0.7	-1.8	hypothetical protein
LU632_RS13165		-0.6	-0.9	hypothetical protein
LU632_RS09975	pqiA	-0.6	-1.7	membrane integrity-associated transporter subunit PqiA
LU632_RS08915	hisIE	-0.6	-0.4	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE
LU632_RS06185	ptrA	-0.6	-1.0	pitrilysin
LU632_RS17145		-0.6	-2.6	hypothetical protein
LU632_RS12110		-0.6	-1.7	type II secretion system protein GspD
LU632_RS08005	nuoJ	-0.6	-2.4	NADH-quinone oxidoreductase subunit J
LU632_RS12765	trpCF	-0.6	-3.3	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF
LU632_RS02070	hflC	-0.6	-1.0	protease modulator HflC
LU632_RS09240		-0.6	-2.7	DUF1852 domain-containing protein
LU632_RS07090		-0.6	-1.1	Rz1 family lipoprotein
LU632_RS02135	mpl	-0.6	-2.2	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
LU632_RS16095	sucA	-0.6	-0.6	2-oxoglutarate dehydrogenase E1 component
LU632_RS08885		-0.6	-2.2	ABC transporter ATP-binding protein
LU632_RS14345		-0.6	-1.0	hypothetical protein
LU632_RS26015		-0.6	-2.3	hypothetical protein
LU632_RS12835		-0.6	-2.4	YciI family protein
LU632_RS01510		-0.6	-1.0	hypothetical protein
LU632_RS07875		-0.6	-1.6	ATP-binding cassette domain-containing protein
LU632_RS08875		-0.6	-1.9	hypothetical protein
LU632_RS17175		-0.6	-1.3	gpW family protein
LU632_RS18100	htpG	-0.6	-1.3	molecular chaperone HtpG
LU632_RS22285		-0.6	-0.8	recombinase family protein
LU632_RS08820		-0.6	-2.8	lipopolysaccharide biosynthesis protein
LU632_RS17370		-0.6	-1.0	hypothetical protein
LU632_RS24805	atpI	-0.6	-1.7	F0F1 ATP synthase subunit I
LU632_RS23475		-0.6	-2.0	hypothetical protein
LU632_RS18275	glnK	-0.6	-2.0	P-II family nitrogen regulator
LU632_RS02065	hflK	-0.6	-0.9	FtsH protease activity modulator HflK
LU632_RS00455	sctW	-0.6	-1.8	type III secretion system gatekeeper subunit SctW
LU632_RS23890	mobA	-0.6	-1.8	molybdenum cofactor guanylyltransferase
LU632_RS19980	glnD	-0.6	-1.1	bifunctional uridylyltransferase/uridylyl-removing protein GlnD
LU632_RS16105	sdhA	-0.6	-3.4	succinate dehydrogenase flavoprotein subunit
LU632_RS19450	pitA	-0.6	-0.8	inorganic phosphate transporter PitA
LU632_RS17115		-0.6	-1.1	phage tail assembly protein
LU632_RS19395		-0.6	-1.3	DHCW motif cupin fold protein
LU632_RS19310		-0.6	-1.1	hypothetical protein
LU632_RS00560		-0.6	-1.2	efflux RND transporter periplasmic adaptor subunit
LU632_RS20905	rraB	-0.6	-2.0	ribonuclease E inhibitor RraB
LU632_RS04550		-0.6	-1.7	DUF2913 family protein
LU632_RS22165	dtd	-0.6	-1.5	D-aminoacyl-tRNA deacylase
LU632_RS12440		-0.6	-1.0	carbonic anhydrase
LU632_RS16115	sdhC	-0.6	-2.5	succinate dehydrogenase cytochrome b556 subunit
LU632_RS02910	rsmH	-0.6	-2.9	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
LU632_RS09420		-0.6	-1.2	hypothetical protein
LU632_RS04065		-0.6	-1.1	AlpA family phage regulatory protein
LU632_RS10790	tagF	-0.6	-4.2	type VI secretion system-associated protein TagF
LU632_RS14410		-0.6	-2.7	hypothetical protein
LU632_RS07980	nuoE	-0.5	-1.1	NADH-quinone oxidoreductase subunit NuoE
LU632_RS06095	mutH	-0.5	-1.9	DNA mismatch repair endonuclease MutH
LU632_RS02730	rsmA	-0.5	-1.1	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
LU632_RS14215		-0.5	-1.0	recombination protein NinB
LU632_RS11560	pspA	-0.5	-1.2	phage shock protein PspA
LU632_RS15860	istB	-0.5	-1.2	IS21-like element helper ATPase IstB
LU632_RS24320		-0.5	-1.7	type II toxin-antitoxin system RelE/ParE family toxin
LU632_RS24035	metR	-0.5	-2.1	HTH-type transcriptional regulator MetR
LU632_RS07995	nuoH	-0.5	-1.8	NADH-quinone oxidoreductase subunit NuoH
LU632_RS16910		-0.5	-1.8	IS91 family transposase
LU632_RS21510	dusB	-0.5	-3.1	tRNA dihydrouridine synthase DusB
LU632_RS10785	tagH	-0.5	-4.5	type VI secretion system-associated FHA domain protein TagH
LU632_RS12710		-0.5	-0.7	DUF2498 family protein
LU632_RS15830		-0.5	-1.0	Arm DNA-binding domain-containing protein
LU632_RS21930		-0.5	-1.8	glycosyltransferase
LU632_RS18615	pgpA	-0.5	-2.1	phosphatidylglycerophosphatase A
LU632_RS20225		-0.5	-1.8	IS1 family transposase
LU632_RS16110	sdhD	-0.5	-2.5	succinate dehydrogenase membrane anchor subunit
LU632_RS17225		-0.5	-2.4	type II toxin-antitoxin system HicB family antitoxin
LU632_RS04230		-0.5	-3.0	sugar ABC transporter ATP-binding protein
LU632_RS05950		-0.5	-1.8	hemolysin III family protein
LU632_RS16450		-0.5	-1.9	hypothetical protein
LU632_RS22710		-0.5	-1.8	transcriptional regulator
LU632_RS00045	ibpA	-0.5	-2.3	heat shock chaperone IbpA
LU632_RS07255		-0.5	-1.5	hypothetical protein
LU632_RS22960	feoA	-0.5	-0.6	ferrous iron transporter A
LU632_RS15835	sbcB	-0.5	-2.5	exodeoxyribonuclease I
LU632_RS18440	hutX	-0.5	-0.8	heme utilization cystosolic carrier protein HutX
LU632_RS05065		-0.5	-1.3	helix-turn-helix domain-containing protein
LU632_RS13595	otsB	-0.5	-1.5	trehalose-phosphatase
LU632_RS09695		-0.5	-1.1	cold shock domain-containing protein
LU632_RS13425		-0.5	-1.6	YebC/PmpR family DNA-binding transcriptional regulator
LU632_RS22445	aroE	-0.5	-1.2	shikimate dehydrogenase
LU632_RS06945		-0.5	-1.6	hypothetical protein
LU632_RS05475		-0.5	-1.4	YqgE/AlgH family protein
LU632_RS12775	trpA	-0.5	-1.8	tryptophan synthase subunit alpha
LU632_RS17435		-0.5	-1.8	DUF2913 family protein

Specific Phenotypes

None in this experiment

For Erwinia tracheiphila SCR3 in rich media experiments