Experiment set8S556 for Erwinia tracheiphila SCR3

200 most important genes:

gene	name	fitness	t score	description
LU632_RS19305		-2.4	-2.8	zinc/cadmium/mercury/lead-transporting ATPase
LU632_RS23980	tatC	-2.4	-9.8	Sec-independent protein translocase subunit TatC
LU632_RS10685		-2.2	-1.5	hypothetical protein
LU632_RS16090	odhB	-2.1	-1.8	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase
LU632_RS22515	zntR	-1.8	-3.5	Zn(2+)-responsive transcriptional regulator
LU632_RS18995	proC	-1.8	-3.0	pyrroline-5-carboxylate reductase
LU632_RS08035		-1.8	-7.3	glucan biosynthesis protein D
LU632_RS06635	zipA	-1.7	-2.3	cell division protein ZipA
LU632_RS12635		-1.7	-1.7	FMN-dependent NADH-azoreductase
LU632_RS19990		-1.7	-2.8	DUF3461 family protein
LU632_RS02050	miaA	-1.7	-2.1	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA
LU632_RS03115		-1.6	-2.0	hypothetical protein
LU632_RS15830		-1.6	-2.0	Arm DNA-binding domain-containing protein
LU632_RS16560		-1.6	-1.2	hypothetical protein
LU632_RS22365	pgi	-1.5	-9.2	glucose-6-phosphate isomerase
LU632_RS02210	yraP	-1.5	-5.1	divisome-associated lipoprotein YraP
LU632_RS14010	ldcA	-1.5	-2.9	muramoyltetrapeptide carboxypeptidase
LU632_RS07905		-1.5	-1.9	IS91 family transposase
LU632_RS02545	serB	-1.4	-2.7	phosphoserine phosphatase
LU632_RS10745	sirB1	-1.4	-0.9	invasion regulator SirB1
LU632_RS13930		-1.3	-2.1	transposase
LU632_RS16990	bamE	-1.3	-2.5	outer membrane protein assembly factor BamE
LU632_RS22445	aroE	-1.2	-2.3	shikimate dehydrogenase
LU632_RS01090	rnhA	-1.2	-1.3	ribonuclease HI
LU632_RS01270	ulaR	-1.2	-2.7	HTH-type transcriptional regulator UlaR
LU632_RS16945	rluD	-1.2	-5.5	23S rRNA pseudouridine(1911/1915/1917) synthase RluD
LU632_RS08590	thiD	-1.2	-1.8	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase
LU632_RS22090		-1.2	-2.0	pyocin activator PrtN family protein
LU632_RS01085		-1.2	-1.7	class I SAM-dependent methyltransferase
LU632_RS06975		-1.2	-1.0	HNH endonuclease
LU632_RS03890		-1.2	-1.0	hypothetical protein
LU632_RS15395	lepA	-1.2	-2.9	translation elongation factor 4
LU632_RS24150		-1.2	-1.5	lipoprotein
LU632_RS24445		-1.2	-1.2	DUF413 domain-containing protein
LU632_RS16415	tatE	-1.2	-1.0	twin-arginine translocase subunit TatE
LU632_RS15415	rseB	-1.2	-2.4	sigma-E factor regulatory protein RseB
LU632_RS05985	recJ	-1.2	-2.1	single-stranded-DNA-specific exonuclease RecJ
LU632_RS21710	rplI	-1.1	-2.2	50S ribosomal protein L9
LU632_RS03515		-1.1	-2.1	TraR/DksA family transcriptional regulator
LU632_RS11345		-1.1	-1.7	transposase
LU632_RS10275	mdoH	-1.1	-4.0	glucans biosynthesis glucosyltransferase MdoH
LU632_RS20805		-1.1	-1.1	AlpA family transcriptional regulator
LU632_RS08850	rfbB	-1.1	-1.6	dTDP-glucose 4,6-dehydratase
LU632_RS22025		-1.1	-2.5	hypothetical protein
LU632_RS13155		-1.1	-2.1	RidA family protein
LU632_RS08585		-1.0	-0.9	hydroxyethylthiazole kinase
LU632_RS09085	pgl	-1.0	-1.6	6-phosphogluconolactonase
LU632_RS04135		-1.0	-1.4	toxin
LU632_RS22785		-1.0	-2.2	YheU family protein
LU632_RS19980	glnD	-1.0	-1.5	bifunctional uridylyltransferase/uridylyl-removing protein GlnD
LU632_RS21750	rnr	-1.0	-4.1	ribonuclease R
LU632_RS03345		-1.0	-1.4	iron ABC transporter substrate-binding protein
LU632_RS13460	cmoB	-1.0	-2.9	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB
LU632_RS12710		-1.0	-1.1	DUF2498 family protein
LU632_RS09625		-1.0	-2.3	GrxA family glutaredoxin
LU632_RS09795	aroA	-1.0	-4.4	3-phosphoshikimate 1-carboxyvinyltransferase
LU632_RS13630		-1.0	-2.0	tyrosine-type recombinase/integrase
LU632_RS15690	gshA	-1.0	-1.0	glutamate--cysteine ligase
LU632_RS09745		-1.0	-0.8	DNA translocase FtsK 4TM domain-containing protein
LU632_RS00695		-1.0	-1.2	fimbria/pilus periplasmic chaperone
LU632_RS23220		-1.0	-1.2	VirK/YbjX family protein
LU632_RS00435	sctF	-1.0	-0.9	type III secretion system needle filament subunit SctF
LU632_RS12905	hns	-1.0	-0.8	DNA-binding transcriptional regulator H-NS
LU632_RS11470	asr	-0.9	-1.9	acid resistance repetitive basic protein Asr
LU632_RS21165	greA	-0.9	-2.7	transcription elongation factor GreA
LU632_RS24450	hdfR	-0.9	-2.9	HTH-type transcriptional regulator HdfR
LU632_RS08210		-0.9	-1.3	hypothetical protein
LU632_RS01610		-0.9	-1.1	tail protein X
LU632_RS25485		-0.9	-2.2	hypothetical protein
LU632_RS16100		-0.9	-2.2	succinate dehydrogenase iron-sulfur subunit
LU632_RS15805		-0.9	-1.3	family 10 glycosylhydrolase
LU632_RS22150	typA	-0.9	-2.7	ribosome-dependent GTPase TypA
LU632_RS14710		-0.9	-1.2	antitermination protein
LU632_RS11625		-0.9	-1.2	antibiotic biosynthesis monooxygenase
LU632_RS21260	kdsC	-0.9	-2.7	3-deoxy-manno-octulosonate-8-phosphatase KdsC
LU632_RS08280	upp	-0.9	-1.5	uracil phosphoribosyltransferase
LU632_RS07190		-0.9	-2.8	tRNA-Arg
LU632_RS16555		-0.9	-1.5	hypothetical protein
LU632_RS21595		-0.9	-1.7	hypothetical protein
LU632_RS05250		-0.8	-2.0	hypothetical protein
LU632_RS10450		-0.8	-2.3	LysR family transcriptional regulator
LU632_RS17370		-0.8	-1.2	hypothetical protein
LU632_RS02910	rsmH	-0.8	-3.9	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
LU632_RS09695		-0.8	-1.5	cold shock domain-containing protein
LU632_RS04205		-0.8	-1.0	hypothetical protein
LU632_RS07685		-0.8	-0.9	helix-turn-helix domain-containing protein
LU632_RS13170		-0.8	-1.2	YoaH family protein
LU632_RS08885		-0.8	-2.8	ABC transporter ATP-binding protein
LU632_RS03545		-0.8	-1.0	hypothetical protein
LU632_RS23505		-0.8	-0.9	IS256 family transposase
LU632_RS02070	hflC	-0.8	-1.1	protease modulator HflC
LU632_RS00420		-0.8	-1.5	type III secretion system protein
LU632_RS18440	hutX	-0.8	-1.6	heme utilization cystosolic carrier protein HutX
LU632_RS14215		-0.8	-1.4	recombination protein NinB
LU632_RS09980	pqiB	-0.8	-2.9	intermembrane transport protein PqiB
LU632_RS04800		-0.8	-2.3	hypothetical protein
LU632_RS14845	yceD	-0.8	-1.3	23S rRNA accumulation protein YceD
LU632_RS04445		-0.8	-1.2	hypothetical protein
LU632_RS21240	mlaE	-0.8	-2.2	lipid asymmetry maintenance ABC transporter permease subunit MlaE
LU632_RS02540		-0.8	-2.3	YtjB family periplasmic protein
LU632_RS11740		-0.8	-1.0	hypothetical protein
LU632_RS08060		-0.8	-0.9	phage protease
LU632_RS11825		-0.8	-0.9	hypothetical protein
LU632_RS16340	lptE	-0.8	-1.4	LPS assembly lipoprotein LptE
LU632_RS10380	flgN	-0.8	-2.2	flagellar export chaperone FlgN
LU632_RS08120	menC	-0.8	-2.5	o-succinylbenzoate synthase
LU632_RS16480		-0.7	-1.9	4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase
LU632_RS19705	glpK	-0.7	-2.6	glycerol kinase GlpK
LU632_RS08255	ppx	-0.7	-1.6	exopolyphosphatase
LU632_RS25930		-0.7	-5.9	acyltransferase
LU632_RS03340		-0.7	-0.8	iron ABC transporter permease
LU632_RS06410		-0.7	-1.0	phosphoadenylyl-sulfate reductase
LU632_RS07045		-0.7	-0.9	hypothetical protein
LU632_RS16110	sdhD	-0.7	-3.3	succinate dehydrogenase membrane anchor subunit
LU632_RS13595	otsB	-0.7	-1.6	trehalose-phosphatase
LU632_RS16115	sdhC	-0.7	-2.5	succinate dehydrogenase cytochrome b556 subunit
LU632_RS15025		-0.7	-2.2	hypothetical protein
LU632_RS19360		-0.7	-1.2	hypothetical protein
LU632_RS15465		-0.7	-1.7	type VI secretion system amidase effector protein Tae4
LU632_RS22285		-0.7	-0.9	recombinase family protein
LU632_RS07740		-0.7	-1.2	phage transcriptional regulator
LU632_RS05325		-0.7	-1.4	hypothetical protein
LU632_RS04190		-0.7	-1.0	hypothetical protein
LU632_RS16105	sdhA	-0.7	-3.9	succinate dehydrogenase flavoprotein subunit
LU632_RS08230		-0.7	-1.9	DUF1493 family protein
LU632_RS07285		-0.7	-1.9	DinI family protein
LU632_RS18120		-0.7	-1.6	hypothetical protein
LU632_RS06610	crr	-0.7	-1.2	PTS glucose transporter subunit IIA
LU632_RS14205		-0.7	-2.1	crossover junction endodeoxyribonuclease RusA
LU632_RS12410		-0.7	-1.9	hypothetical protein
LU632_RS14670		-0.7	-1.5	host specificity protein
LU632_RS18005		-0.7	-1.6	O-antigen ligase family protein
LU632_RS11535		-0.7	-2.2	YcjF family protein
LU632_RS23845		-0.7	-1.3	DUF1493 family protein
LU632_RS15860	istB	-0.7	-1.4	IS21-like element helper ATPase IstB
LU632_RS07210		-0.7	-1.4	transcriptional regulator
LU632_RS02860		-0.7	-2.0	hypothetical protein
LU632_RS26010		-0.7	-3.7	head-tail adaptor
LU632_RS26075		-0.7	-3.6	hypothetical protein
LU632_RS24995		-0.7	-1.0	hypothetical protein
LU632_RS19570		-0.7	-2.6	transcriptional regulator
LU632_RS11750		-0.7	-2.0	acyltransferase
LU632_RS24035	metR	-0.7	-2.2	HTH-type transcriptional regulator MetR
LU632_RS13655		-0.7	-2.5	recombinase family protein
LU632_RS03535		-0.6	-1.6	DinI family protein
LU632_RS22865	aroB	-0.6	-1.1	3-dehydroquinate synthase
LU632_RS20620	cpdA	-0.6	-3.7	3',5'-cyclic-AMP phosphodiesterase
LU632_RS14895		-0.6	-1.4	integrase arm-type DNA-binding domain-containing protein
LU632_RS11660		-0.6	-2.1	sugar transporter
LU632_RS02165		-0.6	-2.0	hypothetical protein
LU632_RS05835		-0.6	-1.8	hypothetical protein
LU632_RS17035		-0.6	-0.7	DinI family protein
LU632_RS12830		-0.6	-2.6	energy transducer TonB
LU632_RS25545		-0.6	-1.5	helix-turn-helix domain-containing protein
LU632_RS17935	qseG	-0.6	-1.9	two-component system QseEF-associated lipoprotein QseG
LU632_RS04630		-0.6	-1.2	hypothetical protein
LU632_RS05125		-0.6	-1.1	TIGR03745 family integrating conjugative element membrane protein
LU632_RS18560		-0.6	-1.5	hypothetical protein
LU632_RS18590	nrdR	-0.6	-1.4	transcriptional regulator NrdR
LU632_RS02465		-0.6	-0.8	IS256 family transposase
LU632_RS06675	cysM	-0.6	-1.1	cysteine synthase CysM
LU632_RS26070		-0.6	-4.9	phage terminase large subunit
LU632_RS22945		-0.6	-0.9	hypothetical protein
LU632_RS12755		-0.6	-3.6	anthranilate synthase component 1
LU632_RS16095	sucA	-0.6	-0.4	2-oxoglutarate dehydrogenase E1 component
LU632_RS15835	sbcB	-0.6	-2.7	exodeoxyribonuclease I
LU632_RS12605	sapD	-0.6	-2.2	peptide ABC transporter ATP-binding protein SapD
LU632_RS11965		-0.6	-2.5	aspartate aminotransferase family protein
LU632_RS15640		-0.6	-0.7	helix-turn-helix domain-containing protein
LU632_RS09240		-0.6	-2.4	DUF1852 domain-containing protein
LU632_RS00950		-0.6	-3.2	thiazole synthase
LU632_RS10270		-0.6	-1.4	glucan biosynthesis protein G
LU632_RS17610	yejK	-0.6	-2.1	nucleoid-associated protein YejK
LU632_RS24885	pstC	-0.6	-1.5	phosphate ABC transporter permease PstC
LU632_RS01655		-0.6	-1.4	phage tail protein I
LU632_RS12835		-0.6	-1.5	YciI family protein
LU632_RS07220		-0.6	-1.2	hypothetical protein
LU632_RS14475		-0.6	-2.4	phage regulatory protein/antirepressor Ant
LU632_RS05460		-0.6	-2.7	YggS family pyridoxal phosphate-dependent enzyme
LU632_RS01320	crcB	-0.6	-1.3	fluoride efflux transporter CrcB
LU632_RS20420		-0.6	-1.1	DNA-binding protein
LU632_RS09245		-0.6	-1.8	L,D-transpeptidase family protein
LU632_RS00490		-0.6	-1.5	EscR/YscR/HrcR family type III secretion system export apparatus protein
LU632_RS05395		-0.6	-1.6	TetR/AcrR family transcriptional regulator
LU632_RS21880	secB	-0.6	-1.4	protein-export chaperone SecB
LU632_RS09355		-0.6	-1.9	DUF3833 domain-containing protein
LU632_RS21860	cpxA	-0.6	-2.9	envelope stress sensor histidine kinase CpxA
LU632_RS05120		-0.6	-0.6	TIGR03758 family integrating conjugative element protein
LU632_RS25030		-0.6	-1.1	hypothetical protein
LU632_RS13445		-0.6	-1.3	DUF72 domain-containing protein
LU632_RS16130		-0.6	-0.8	helix-turn-helix domain-containing protein
LU632_RS00945	thiH	-0.6	-4.0	2-iminoacetate synthase ThiH
LU632_RS00970	thiC	-0.6	-3.1	phosphomethylpyrimidine synthase ThiC
LU632_RS19100		-0.6	-0.9	hypothetical protein
LU632_RS11570	sapA	-0.6	-2.8	peptide ABC transporter substrate-binding protein SapA
LU632_RS04805		-0.6	-1.5	hypothetical protein
LU632_RS26080		-0.6	-3.8	site-specific integrase
LU632_RS00165		-0.6	-0.7	IS6 family transposase
LU632_RS26015		-0.6	-2.0	hypothetical protein
LU632_RS03320		-0.6	-2.7	hypothetical protein

Specific Phenotypes

None in this experiment

For Erwinia tracheiphila SCR3 in rich media experiments