Experiment set8S420 for Ralstonia solanacearum PSI07

Compare to:

SMSA no antibiotic control

200 most detrimental genes:

  gene name fitness t score description  
RPSI07_RS18140 +1.8 16.0 RNA polymerase sigma factor RpoS compare
RPSI07_RS22735 +1.6 11.1 sensor histidine kinase compare
RPSI07_RS22720 +1.5 12.9 DNA-binding response regulator compare
RPSI07_RS07405 +1.4 8.5 helix-turn-helix transcriptional regulator compare
RPSI07_RS12335 +1.4 12.2 type II toxin-antitoxin system HipA family toxin compare
RPSI07_RS18145 +1.3 8.2 LysM peptidoglycan-binding domain-containing protein compare
RPSI07_RS11495 +1.3 8.8 hybrid sensor histidine kinase/response regulator compare
RPSI07_RS07395 +1.2 9.3 amino acid ABC transporter permease compare
RPSI07_RS04530 +1.2 10.9 hypothetical protein compare
RPSI07_RS11500 +1.1 6.3 two-component sensor histidine kinase compare
RPSI07_RS08725 +1.1 2.2 septal ring lytic transglycosylase RlpA family protein compare
RPSI07_RS19220 +1.0 7.9 ABC transporter permease compare
RPSI07_RS19480 +1.0 2.0 hypothetical protein compare
RPSI07_RS24370 +1.0 0.7 hypothetical protein compare
RPSI07_RS12000 +1.0 9.5 polynucleotide adenylyltransferase PcnB compare
RPSI07_RS11505 +1.0 6.9 class I SAM-dependent methyltransferase compare
RPSI07_RS12025 +1.0 2.3 hypothetical protein compare
RPSI07_RS18195 +0.9 1.3 GntR family transcriptional regulator compare
RPSI07_RS07400 +0.9 5.2 arginase compare
RPSI07_RS08300 +0.9 8.4 OmpW family protein compare
RPSI07_RS17690 +0.9 5.4 23S rRNA pseudouridylate synthase B compare
RPSI07_RS14910 +0.9 0.9 hypothetical protein compare
RPSI07_RS19215 +0.9 6.3 sugar ABC transporter ATP-binding protein compare
RPSI07_RS18650 +0.8 1.7 YeiH family putative sulfate export transporter compare
RPSI07_RS22435 +0.8 5.0 phosphoenolpyruvate--protein phosphotransferase compare
RPSI07_RS20705 +0.8 2.3 membrane protein compare
RPSI07_RS17540 +0.8 1.1 peroxiredoxin compare
RPSI07_RS22395 +0.8 2.1 protein-export chaperone SecB compare
RPSI07_RS12225 +0.8 2.0 biopolymer transporter ExbD compare
RPSI07_RS00180 +0.8 1.0 chemotaxis protein CheY compare
RPSI07_RS19375 +0.8 1.2 hypothetical protein compare
RPSI07_RS02445 +0.8 1.5 hypothetical protein compare
RPSI07_RS19075 +0.7 2.0 Rieske (2Fe-2S) protein compare
RPSI07_RS20405 +0.7 2.4 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II compare
RPSI07_RS00460 +0.7 2.4 hypothetical protein compare
RPSI07_RS08495 +0.7 2.1 DUF3562 domain-containing protein compare
RPSI07_RS19465 +0.7 1.3 ATP-dependent helicase compare
RPSI07_RS22625 +0.7 0.9 SPOR domain-containing protein compare
RPSI07_RS09620 +0.7 3.3 DUF1835 domain-containing protein compare
RPSI07_RS10330 +0.7 2.4 tripartite tricarboxylate transporter substrate binding protein compare
RPSI07_RS09105 +0.7 2.5 hypothetical protein compare
RPSI07_RS15180 +0.7 1.8 hypothetical protein compare
RPSI07_RS00390 +0.6 5.3 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
RPSI07_RS22500 +0.6 1.0 lysine transporter LysE compare
RPSI07_RS22990 +0.6 4.9 hypothetical protein compare
RPSI07_RS18515 +0.6 0.9 thiol-disulfide oxidoreductase DCC family protein compare
RPSI07_RS17325 +0.6 1.8 LysR family transcriptional regulator compare
RPSI07_RS15840 +0.6 4.2 phasin; polyhydroxyalkanoate synthesis and granule formation regulator/factor compare
RPSI07_RS11785 +0.6 2.5 VOC family protein compare
RPSI07_RS06360 +0.6 0.9 sensor histidine kinase compare
RPSI07_RS22650 +0.6 1.8 hypothetical protein compare
RPSI07_RS12045 +0.6 0.9 DNA oxidative demethylase AlkB compare
RPSI07_RS00300 +0.6 2.2 glyoxalase compare
RPSI07_RS11955 +0.6 1.4 nucleoside diphosphate kinase regulator compare
RPSI07_RS11950 +0.6 1.9 thiol reductase thioredoxin compare
RPSI07_RS00780 +0.6 2.7 MarR family transcriptional regulator compare
RPSI07_RS24825 +0.6 2.3 hypothetical protein compare
RPSI07_RS17640 +0.6 1.4 translational GTPase TypA compare
RPSI07_RS19015 +0.6 2.9 RNA polymerase sigma factor RpoE compare
RPSI07_RS21050 +0.6 4.3 MarR family transcriptional regulator compare
RPSI07_RS07155 +0.6 1.8 PqqD family protein compare
RPSI07_RS24810 +0.6 1.2 hypothetical protein compare
RPSI07_RS04845 +0.6 1.9 sulfurtransferase FdhD compare
RPSI07_RS22505 +0.5 2.1 hypothetical protein compare
RPSI07_RS23820 +0.5 1.8 methionine biosynthesis protein MetW compare
RPSI07_RS14635 +0.5 0.8 hypothetical protein compare
RPSI07_RS17565 +0.5 2.1 DUF47 domain-containing protein compare
RPSI07_RS23235 +0.5 0.8 ABC transporter permease compare
RPSI07_RS20605 +0.5 1.0 glucose-1-phosphate thymidylyltransferase compare
RPSI07_RS07760 +0.5 1.8 cysteine ABC transporter ATP-binding protein compare
RPSI07_RS12620 +0.5 3.0 DNA-binding response regulator compare
RPSI07_RS08870 +0.5 1.8 hypothetical protein compare
RPSI07_RS11795 +0.5 1.7 CidA/LrgA family protein compare
RPSI07_RS08960 +0.5 2.2 DUF3489 domain-containing protein compare
RPSI07_RS01925 +0.5 1.3 methyl-accepting chemotaxis protein compare
RPSI07_RS02640 +0.5 2.2 DUF2783 domain-containing protein compare
RPSI07_RS05025 +0.5 1.5 DUF3613 domain-containing protein compare
RPSI07_RS19940 +0.5 1.4 sulfite:cytochrome C oxidoreductase subunit B compare
RPSI07_RS19700 +0.5 1.6 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
RPSI07_RS22510 +0.5 2.5 O-acetyl-ADP-ribose deacetylase compare
RPSI07_RS10615 +0.5 1.5 hypothetical protein compare
RPSI07_RS00540 +0.5 1.1 type VI secretion protein compare
RPSI07_RS20370 +0.5 1.2 pilus assembly protein PilW compare
RPSI07_RS16205 +0.5 2.3 DUF1842 domain-containing protein compare
RPSI07_RS18175 +0.5 1.7 ABC transporter permease compare
RPSI07_RS20725 +0.5 0.7 hypothetical protein compare
RPSI07_RS06795 +0.5 1.6 transcriptional regulator compare
RPSI07_RS12615 +0.5 3.7 hybrid sensor histidine kinase/response regulator compare
RPSI07_RS21290 +0.5 1.2 hypothetical protein compare
RPSI07_RS20665 +0.5 2.4 chemotaxis protein compare
RPSI07_RS06735 +0.5 1.8 zinc-binding protein compare
RPSI07_RS17065 +0.5 1.5 RIP metalloprotease RseP compare
RPSI07_RS14785 +0.5 1.2 phasin compare
RPSI07_RS12970 +0.5 2.8 OmpA family protein compare
RPSI07_RS05995 +0.5 1.8 ABC transporter ATP-binding protein compare
RPSI07_RS22080 +0.5 1.9 LysE family translocator compare
RPSI07_RS22100 +0.5 3.4 potassium transporter compare
RPSI07_RS04440 +0.5 4.1 hypothetical protein compare
RPSI07_RS03305 +0.5 2.9 XRE family transcriptional regulator compare
RPSI07_RS13115 +0.5 4.5 heme biosynthesis protein HemY compare
RPSI07_RS08025 +0.5 2.2 amino acid ABC transporter ATP-binding protein compare
RPSI07_RS24915 +0.5 1.3 hypothetical protein compare
RPSI07_RS24195 +0.5 3.1 hypothetical protein compare
RPSI07_RS20020 +0.5 1.5 DUF2214 domain-containing protein compare
RPSI07_RS07100 +0.5 3.2 virulence factor family protein compare
RPSI07_RS08380 +0.5 0.8 LysR family transcriptional regulator compare
RPSI07_RS04995 +0.4 1.0 antibiotic biosynthesis monooxygenase compare
RPSI07_RS23065 +0.4 0.4 acylphosphatase compare
RPSI07_RS16035 +0.4 1.7 acetylornithine deacetylase compare
RPSI07_RS14495 +0.4 1.4 urease accessory protein UreF compare
RPSI07_RS23360 +0.4 1.4 carboxymuconolactone decarboxylase family protein compare
RPSI07_RS14810 +0.4 1.2 hemin uptake protein HemP compare
RPSI07_RS18575 +0.4 1.3 hypothetical protein compare
RPSI07_RS07045 +0.4 1.8 hypothetical protein compare
RPSI07_RS04975 +0.4 1.9 toxin-activating lysine-acyltransferase compare
RPSI07_RS06505 +0.4 1.7 hypothetical protein compare
RPSI07_RS14805 +0.4 0.9 heme-binding protein compare
RPSI07_RS19650 +0.4 0.9 competence protein ComEA compare
RPSI07_RS06540 +0.4 2.7 hypothetical protein compare
RPSI07_RS19770 +0.4 1.0 transposase compare
RPSI07_RS10745 +0.4 1.8 DUF1311 domain-containing protein compare
RPSI07_RS18580 +0.4 1.8 transglutaminase family protein compare
RPSI07_RS23530 +0.4 1.1 amino acid ABC transporter substrate-binding protein compare
RPSI07_RS17220 +0.4 2.4 S58 family peptidase compare
RPSI07_RS09375 +0.4 3.6 DUF4123 domain-containing protein compare
RPSI07_RS07300 +0.4 1.4 MurR/RpiR family transcriptional regulator compare
RPSI07_RS02225 +0.4 2.3 precorrin-2 C(20)-methyltransferase compare
RPSI07_RS09355 +0.4 2.6 XRE family transcriptional regulator compare
RPSI07_RS22730 +0.4 0.9 entericidin, EcnA/B family compare
RPSI07_RS13785 +0.4 0.9 allophanate hydrolase compare
RPSI07_RS07380 +0.4 3.2 LysR family transcriptional regulator compare
RPSI07_RS18090 +0.4 1.1 membrane protein compare
RPSI07_RS22740 +0.4 1.3 DUF1840 domain-containing protein compare
RPSI07_RS04135 +0.4 0.9 arsenate reductase ArsC compare
RPSI07_RS10780 +0.4 0.9 murein transglycosylase compare
RPSI07_RS09100 +0.4 0.9 hypothetical protein compare
RPSI07_RS08595 +0.4 0.4 hypothetical protein compare
RPSI07_RS14650 +0.4 0.6 CoA ester lyase compare
RPSI07_RS21090 +0.4 1.3 hypothetical protein compare
RPSI07_RS02405 +0.4 1.1 two-component sensor histidine kinase compare
RPSI07_RS12055 +0.4 1.1 cysteine methyltransferase compare
RPSI07_RS11745 +0.4 1.4 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
RPSI07_RS04900 +0.4 1.0 oxidoreductase compare
RPSI07_RS24850 +0.4 0.9 retA reverse transcriptase compare
RPSI07_RS11305 +0.4 1.4 monofunctional biosynthetic peptidoglycan transglycosylase compare
RPSI07_RS20145 +0.4 1.4 pyridoxamine 5'-phosphate oxidase compare
RPSI07_RS18475 +0.4 0.9 class I SAM-dependent methyltransferase compare
RPSI07_RS12575 +0.4 1.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
RPSI07_RS00785 +0.4 3.0 crotonase compare
RPSI07_RS12185 +0.4 0.8 N-acetylmuramoyl-L-alanine amidase compare
RPSI07_RS00385 +0.4 2.6 2-methylaconitate cis-trans isomerase PrpF compare
RPSI07_RS15365 +0.4 2.4 ArsR family transcriptional regulator compare
RPSI07_RS18830 +0.4 2.3 salicylate-5-hydroxylase small oxygenase NagH compare
RPSI07_RS19625 +0.4 1.0 ABC transporter permease compare
RPSI07_RS17005 +0.4 2.0 SPFH/Band 7/PHB domain protein compare
RPSI07_RS24955 +0.4 1.0 glyceraldehyde-3-phosphate dehydrogenase compare
RPSI07_RS19445 +0.4 1.2 hypothetical protein compare
RPSI07_RS15360 +0.4 3.2 NAD(P)/FAD-dependent oxidoreductase compare
RPSI07_RS20655 +0.4 1.7 16S rRNA pseudouridine(516) synthase compare
RPSI07_RS15030 +0.4 2.6 LysR family transcriptional regulator compare
RPSI07_RS22750 +0.4 1.1 cell division protein FtsN compare
RPSI07_RS16935 +0.4 0.5 LysR family transcriptional regulator compare
RPSI07_RS18315 +0.4 1.8 esterase compare
RPSI07_RS00365 +0.4 2.3 SulP family inorganic anion transporter compare
RPSI07_RS17930 +0.4 1.9 MocE compare
RPSI07_RS23175 +0.4 1.6 ornithine--oxo-acid transaminase compare
RPSI07_RS13545 +0.4 1.0 GatB/YqeY domain-containing protein compare
RPSI07_RS18770 +0.4 0.7 hypothetical protein compare
RPSI07_RS00125 +0.4 2.4 YbhB/YbcL family Raf kinase inhibitor-like protein compare
RPSI07_RS19535 +0.4 1.1 hypothetical protein compare
RPSI07_RS06145 +0.4 1.0 glycine zipper 2TM domain-containing protein compare
RPSI07_RS03320 +0.4 0.9 Crp/Fnr family transcriptional regulator compare
RPSI07_RS23670 +0.4 1.5 hypothetical protein compare
RPSI07_RS22655 +0.4 1.9 enoyl-CoA hydratase compare
RPSI07_RS23380 +0.4 1.9 acyl-CoA dehydrogenase compare
RPSI07_RS23415 +0.4 0.7 nitronate monooxygenase compare
RPSI07_RS18210 +0.4 0.7 antibiotic biosynthesis monooxygenase compare
RPSI07_RS14155 +0.4 2.0 adenosine deaminase compare
RPSI07_RS18735 +0.3 1.9 DNA-binding protein compare
RPSI07_RS23575 +0.3 1.5 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB compare
RPSI07_RS01390 +0.3 2.0 flagellar basal body rod protein FlgB compare
RPSI07_RS11525 +0.3 1.7 aspartate 1-decarboxylase compare
RPSI07_RS03550 +0.3 1.1 transcriptional regulator compare
RPSI07_RS10700 +0.3 2.7 PDZ domain-containing protein compare
RPSI07_RS09040 +0.3 1.1 hypothetical protein compare
RPSI07_RS11240 +0.3 0.8 DUF3426 domain-containing protein compare
RPSI07_RS11365 +0.3 0.9 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
RPSI07_RS12245 +0.3 1.7 beta-ketoacyl-ACP reductase compare
RPSI07_RS13415 +0.3 1.8 LysR family transcriptional regulator compare
RPSI07_RS15230 +0.3 0.9 hydroxyacylglutathione hydrolase compare
RPSI07_RS14140 +0.3 1.7 hypothetical protein compare
RPSI07_RS23720 +0.3 3.0 RNA polymerase-binding protein DksA compare
RPSI07_RS06800 +0.3 0.9 helix-turn-helix transcriptional regulator compare
RPSI07_RS17850 +0.3 0.6 sterol desaturase family protein compare
RPSI07_RS19270 +0.3 1.2 malonic semialdehyde reductase compare
RPSI07_RS23160 +0.3 1.4 TetR/AcrR family transcriptional regulator compare
RPSI07_RS05870 +0.3 2.1 hypothetical protein compare
RPSI07_RS02830 +0.3 2.2 acetyl-CoA carboxylase biotin carboxylase subunit compare
RPSI07_RS10270 +0.3 1.0 pilus assembly protein PilM compare
RPSI07_RS09545 +0.3 0.8 prepilin-type N-terminal cleavage/methylation domain-containing protein compare


Specific Phenotypes

None in this experiment

For Ralstonia solanacearum PSI07 in smsa no antibiotic control experiments