Experiment set8S415 for Ralstonia solanacearum PSI07

SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet

Group: stress
Media: SMSA + Ralstonia_antibiotic_mix_minus_CrystalViolet
Culturing: RalstoniaPSI07_ML2, tube, Aerobic, at 28 (C)
By: Nathalie Aoun on 5/29/2024_B
Media components: 10 g/L Bacto Peptone, 1 g/L casamino acids, 68 mM Glycerol

Specific Phenotypes

For 11 genes in this experiment

For stress Ralstonia_antibiotic_mix_minus_CrystalViolet in Ralstonia solanacearum PSI07

For stress Ralstonia_antibiotic_mix_minus_CrystalViolet across organisms

SEED Subsystems

Subsystem	#Specific
Homogentisate pathway of aromatic compound degradation	2
Salicylate and gentisate catabolism	2
Glutathione-regulated potassium-efflux system and associated functions	1
Potassium homeostasis	1
RNA 3'-terminal phosphate cyclase	1
RNA processing and degradation, bacterial	1
tRNA processing	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Pyrimidine metabolism
• Tyrosine metabolism
• Glutathione metabolism
• Styrene degradation

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
pseudouridine degradation	2	1	1
gentisate degradation I	3	3	1
L-tyrosine degradation I	5	5	1
tRNA processing	10	8	2
5-nitroanthranilate degradation	6	3	1
3-phenylpropanoate degradation	10	6	1