Experiment set8S402 for Ralstonia solanacearum PSI07

Compare to:

SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet

200 most detrimental genes:

  gene name fitness t score description  
RPSI07_RS18515 +6.6 7.8 thiol-disulfide oxidoreductase DCC family protein compare
RPSI07_RS25265 +4.0 2.7 hypothetical protein compare
RPSI07_RS11705 +3.1 3.9 DNA starvation/stationary phase protection protein compare
RPSI07_RS19210 +2.8 2.7 sugar ABC transporter substrate-binding protein compare
RPSI07_RS19480 +2.7 2.1 hypothetical protein compare
RPSI07_RS23720 +2.5 8.6 RNA polymerase-binding protein DksA compare
RPSI07_RS20375 +2.4 1.5 pilus assembly protein PilZ compare
RPSI07_RS09560 +2.4 2.1 type II secretion system protein GspG compare
RPSI07_RS11145 +2.4 1.5 hypothetical protein compare
RPSI07_RS17690 +2.3 3.2 23S rRNA pseudouridylate synthase B compare
RPSI07_RS12045 +2.3 1.3 DNA oxidative demethylase AlkB compare
RPSI07_RS18140 +2.3 15.6 RNA polymerase sigma factor RpoS compare
RPSI07_RS18145 +2.2 7.4 LysM peptidoglycan-binding domain-containing protein compare
RPSI07_RS22825 +2.2 1.6 HAD family phosphatase compare
RPSI07_RS11295 +2.1 2.2 energy transducer TonB compare
RPSI07_RS09545 +2.1 2.7 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
RPSI07_RS12960 +2.0 5.7 outer membrane protein assembly factor BamE compare
RPSI07_RS14250 +2.0 2.7 RNA polymerase sigma factor compare
RPSI07_RS24370 +2.0 1.2 hypothetical protein compare
RPSI07_RS07620 +1.9 2.0 XRE family transcriptional regulator compare
RPSI07_RS08120 +1.9 2.0 hydrolase compare
RPSI07_RS22350 +1.8 2.2 cytochrome c oxidase assembly protein compare
RPSI07_RS22720 +1.8 4.3 DNA-binding response regulator compare
RPSI07_RS22625 +1.8 1.8 SPOR domain-containing protein compare
RPSI07_RS09515 +1.7 6.0 type II secretion system protein GspE compare
RPSI07_RS23865 +1.7 2.2 DNA-binding response regulator compare
RPSI07_RS06360 +1.7 1.1 sensor histidine kinase compare
RPSI07_RS19010 +1.7 4.7 anti-sigma factor compare
RPSI07_RS09540 +1.6 6.6 general secretion pathway protein K compare
RPSI07_RS17270 +1.6 1.6 DNA repair protein RadA compare
RPSI07_RS02070 +1.6 1.6 hypothetical protein compare
RPSI07_RS09505 +1.6 5.5 type II secretion system protein GspF compare
RPSI07_RS22735 +1.6 6.5 sensor histidine kinase compare
RPSI07_RS11720 +1.6 1.9 pyrroline-5-carboxylate reductase compare
RPSI07_RS13720 +1.5 1.0 DUF1232 domain-containing protein compare
RPSI07_RS20680 +1.5 1.3 response regulator compare
RPSI07_RS24355 +1.5 1.4 hypothetical protein compare
RPSI07_RS07405 +1.5 4.9 helix-turn-helix transcriptional regulator compare
RPSI07_RS18510 +1.5 1.7 DUF4166 domain-containing protein compare
RPSI07_RS22105 +1.5 3.3 KpsF/GutQ family sugar-phosphate isomerase compare
RPSI07_RS23895 +1.4 8.2 TetR family transcriptional regulator compare
RPSI07_RS12375 +1.4 2.7 DoxX family protein compare
RPSI07_RS12335 +1.4 6.6 type II toxin-antitoxin system HipA family toxin compare
RPSI07_RS18110 +1.4 2.0 type IV pilus biogenesis/stability protein PilW compare
RPSI07_RS12865 +1.4 2.0 cell division protein ZapA compare
RPSI07_RS05495 +1.4 1.2 DUF333 domain-containing protein compare
RPSI07_RS16355 +1.4 4.8 acetyl-CoA C-acyltransferase compare
RPSI07_RS09535 +1.4 3.1 general secretion pathway protein L compare
RPSI07_RS15160 +1.4 1.7 DUF2892 domain-containing protein compare
RPSI07_RS10555 +1.4 1.1 FecR family protein compare
RPSI07_RS23775 +1.3 0.5 transmembrane anti-sigma factor compare
RPSI07_RS14910 +1.3 0.8 hypothetical protein compare
RPSI07_RS23580 +1.3 3.1 zinc metalloprotease HtpX compare
RPSI07_RS09520 +1.3 6.6 type II secretion system protein GspD compare
RPSI07_RS22650 +1.3 1.3 hypothetical protein compare
RPSI07_RS04900 +1.3 2.7 oxidoreductase compare
RPSI07_RS18760 +1.3 2.8 thiamine biosynthesis protein ThiS compare
RPSI07_RS18195 +1.3 1.0 GntR family transcriptional regulator compare
RPSI07_RS09550 +1.3 2.5 type II secretion system protein GspI compare
RPSI07_RS15330 +1.2 5.9 polyphosphate kinase 1 compare
RPSI07_RS19215 +1.2 4.8 sugar ABC transporter ATP-binding protein compare
RPSI07_RS09020 +1.2 3.8 hypothetical protein compare
RPSI07_RS20215 +1.2 1.4 DUF883 domain-containing protein compare
RPSI07_RS03375 +1.2 6.8 TetR/AcrR family transcriptional regulator compare
RPSI07_RS11495 +1.2 4.2 hybrid sensor histidine kinase/response regulator compare
RPSI07_RS19005 +1.2 1.6 sugar dehydratase compare
RPSI07_RS17755 +1.2 2.6 hypothetical protein compare
RPSI07_RS24615 +1.2 1.2 hypothetical protein compare
RPSI07_RS20365 +1.2 5.2 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
RPSI07_RS20045 +1.2 1.6 RNA-binding protein compare
RPSI07_RS07675 +1.2 1.8 MarR family transcriptional regulator compare
RPSI07_RS20725 +1.2 1.2 hypothetical protein compare
RPSI07_RS17390 +1.2 1.5 sulfate ABC transporter ATP-binding protein compare
RPSI07_RS11980 +1.2 1.9 ABC transporter permease compare
RPSI07_RS11905 +1.2 4.2 histidine utilization repressor compare
RPSI07_RS24940 +1.2 1.8 hypothetical protein compare
RPSI07_RS21835 +1.2 1.4 hypothetical protein compare
RPSI07_RS11590 +1.1 1.6 polyisoprenoid-binding protein compare
RPSI07_RS13310 +1.1 1.5 hypothetical protein compare
RPSI07_RS11555 +1.1 3.1 MarR family transcriptional regulator compare
RPSI07_RS17355 +1.1 3.2 ribonuclease E inhibitor RraA compare
RPSI07_RS04530 +1.1 7.7 hypothetical protein compare
RPSI07_RS18555 +1.1 2.0 DUF1330 domain-containing protein compare
RPSI07_RS05700 +1.1 2.3 polyisoprenoid-binding protein compare
RPSI07_RS09530 +1.1 1.0 general secretion pathway protein M compare
RPSI07_RS17850 +1.1 1.4 sterol desaturase family protein compare
RPSI07_RS00275 +1.1 1.6 type II toxin-antitoxin system RelE/ParE family toxin compare
RPSI07_RS05535 +1.1 0.8 GGDEF domain-containing protein compare
RPSI07_RS11500 +1.1 6.2 two-component sensor histidine kinase compare
RPSI07_RS04750 +1.1 4.2 DNA-binding protein compare
RPSI07_RS18250 +1.1 3.6 DNA-binding response regulator compare
RPSI07_RS10510 +1.1 2.3 cytochrome b compare
RPSI07_RS10195 +1.1 0.9 protein-disulfide reductase DsbD compare
RPSI07_RS08185 +1.0 2.3 nitrate ABC transporter ATP-binding protein compare
RPSI07_RS15785 +1.0 2.2 exodeoxyribonuclease III compare
RPSI07_RS21620 +1.0 0.9 DUF3025 domain-containing protein compare
RPSI07_RS23825 +1.0 5.9 polyhydroxybutyrate granule-associated protein (Phasin) phaP compare
RPSI07_RS14015 +1.0 1.8 ferredoxin compare
RPSI07_RS21050 +1.0 6.2 MarR family transcriptional regulator compare
RPSI07_RS11115 +1.0 4.3 lytic transglycosylase compare
RPSI07_RS25095 +1.0 2.0 hypothetical protein compare
RPSI07_RS18455 +1.0 1.2 cupin domain-containing protein compare
RPSI07_RS05140 +1.0 3.4 MarR family transcriptional regulator compare
RPSI07_RS21740 +1.0 0.9 FmdB family transcriptional regulator compare
RPSI07_RS09525 +1.0 1.9 type II secretion system protein N compare
RPSI07_RS06050 +1.0 2.1 DNA-binding response regulator compare
RPSI07_RS01595 +1.0 2.6 hypothetical protein compare
RPSI07_RS13085 +1.0 1.2 membrane protein compare
RPSI07_RS00100 +1.0 1.5 hypothetical protein compare
RPSI07_RS10260 +1.0 1.7 iron donor protein CyaY compare
RPSI07_RS13290 +1.0 4.8 sugar ABC transporter compare
RPSI07_RS24260 +1.0 0.8 2,5-didehydrogluconate reductase compare
RPSI07_RS17825 +1.0 3.4 hypothetical protein compare
RPSI07_RS14605 +1.0 1.1 hypothetical protein compare
RPSI07_RS22280 +1.0 1.1 ABC transporter ATP-binding protein compare
RPSI07_RS12000 +1.0 4.0 polynucleotide adenylyltransferase PcnB compare
RPSI07_RS23605 +1.0 5.7 LysM peptidoglycan-binding domain-containing protein compare
RPSI07_RS14520 +1.0 2.3 isoprenylcysteine carboxylmethyltransferase family protein compare
RPSI07_RS08975 +1.0 0.9 hypothetical protein compare
RPSI07_RS09440 +1.0 1.4 helix-turn-helix domain-containing protein compare
RPSI07_RS06020 +1.0 2.1 glutathione S-transferase compare
RPSI07_RS20700 +1.0 3.1 LemA family protein compare
RPSI07_RS02370 +1.0 1.3 copper resistance protein C compare
RPSI07_RS24515 +1.0 2.0 hypothetical protein compare
RPSI07_RS20360 +0.9 3.6 type IV pilin protein compare
RPSI07_RS12025 +0.9 1.4 hypothetical protein compare
RPSI07_RS16215 +0.9 1.4 LysR family transcriptional regulator compare
RPSI07_RS09620 +0.9 3.8 DUF1835 domain-containing protein compare
RPSI07_RS20985 +0.9 3.1 paraquat-inducible protein A compare
RPSI07_RS16000 +0.9 4.2 polyhydroxyalkanoate synthesis repressor PhaR compare
RPSI07_RS13355 +0.9 2.3 IclR family transcriptional regulator compare
RPSI07_RS11050 +0.9 2.0 prepilin peptidase compare
RPSI07_RS15980 +0.9 2.1 hypothetical protein compare
RPSI07_RS09565 +0.9 0.8 pilus assembly protein PilZ compare
RPSI07_RS06145 +0.9 1.5 glycine zipper 2TM domain-containing protein compare
RPSI07_RS05655 +0.9 1.8 VOC family virulence protein compare
RPSI07_RS02445 +0.9 0.7 hypothetical protein compare
RPSI07_RS09995 +0.9 2.0 DUF1175 domain-containing protein compare
RPSI07_RS01420 +0.9 1.8 flagellar L-ring protein FlgH compare
RPSI07_RS00600 +0.9 1.6 FCD domain-containing protein compare
RPSI07_RS07400 +0.9 1.7 arginase compare
RPSI07_RS10600 +0.9 2.7 hypothetical protein compare
RPSI07_RS20125 +0.9 3.5 cytochrome c compare
RPSI07_RS07525 +0.9 3.8 hypothetical protein compare
RPSI07_RS24885 +0.9 1.8 hypothetical protein compare
RPSI07_RS14480 +0.9 1.9 urease subunit beta compare
RPSI07_RS19960 +0.9 2.0 4-oxalocrotonate tautomerase compare
RPSI07_RS01660 +0.9 2.0 transcriptional regulator compare
RPSI07_RS15870 +0.8 2.1 IclR family transcriptional regulator compare
RPSI07_RS08625 +0.8 3.0 GNAT family N-acetyltransferase compare
RPSI07_RS15200 +0.8 0.9 Crp/Fnr family transcriptional regulator compare
RPSI07_RS19220 +0.8 4.2 ABC transporter permease compare
RPSI07_RS20345 +0.8 4.6 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
RPSI07_RS01900 +0.8 0.9 HIT family protein compare
RPSI07_RS11060 +0.8 3.4 type IV-A pilus assembly ATPase PilB compare
RPSI07_RS10290 +0.8 3.7 type IV pilus secretin PilQ compare
RPSI07_RS13660 +0.8 0.7 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
RPSI07_RS09510 +0.8 3.5 hypothetical protein compare
RPSI07_RS11690 +0.8 1.7 hydrogen peroxide-inducible genes activator compare
RPSI07_RS15265 +0.8 1.9 DUF4149 domain-containing protein compare
RPSI07_RS05470 +0.8 1.3 permease compare
RPSI07_RS06775 +0.8 1.7 DUF488 domain-containing protein compare
RPSI07_RS19165 +0.8 1.9 Fe-S assembly protein IscX compare
RPSI07_RS14425 +0.8 1.3 acyl-CoA dehydrogenase compare
RPSI07_RS16835 +0.8 1.2 HAMP domain-containing protein compare
RPSI07_RS20340 +0.8 3.5 type IV pilus modification protein PilV compare
RPSI07_RS17480 +0.8 1.9 IclR family transcriptional regulator compare
RPSI07_RS03135 +0.8 3.3 LysR family transcriptional regulator compare
RPSI07_RS22275 +0.8 1.7 nitrate ABC transporter, permease protein compare
RPSI07_RS14200 +0.8 0.8 DUF924 domain-containing protein compare
RPSI07_RS17935 +0.8 1.6 addiction module antitoxin RelB compare
RPSI07_RS13295 +0.8 3.8 polysaccharide transport system component transmembrane protein (ragE) compare
RPSI07_RS22590 +0.8 2.5 teicoplanin resistance protein VanZ compare
RPSI07_RS16015 +0.8 1.7 acetyl-CoA C-acyltransferase compare
RPSI07_RS24125 +0.8 2.3 hypothetical protein compare
RPSI07_RS00990 +0.8 2.3 siderophore-interacting protein compare
RPSI07_RS16780 +0.8 0.9 LysR family transcriptional regulator compare
RPSI07_RS23280 +0.8 2.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
RPSI07_RS12620 +0.8 2.1 DNA-binding response regulator compare
RPSI07_RS06405 +0.8 0.9 hypothetical protein compare
RPSI07_RS20650 +0.8 0.8 YqgE/AlgH family protein compare
RPSI07_RS10370 +0.8 1.0 ABC transporter permease compare
RPSI07_RS17155 +0.8 2.1 succinyldiaminopimelate transaminase compare
RPSI07_RS19750 +0.8 4.1 DUF748 domain-containing protein compare
RPSI07_RS22670 +0.8 0.9 IclR family transcriptional regulator compare
RPSI07_RS07395 +0.8 4.0 amino acid ABC transporter permease compare
RPSI07_RS13485 +0.8 1.6 NAD(P)/FAD-dependent oxidoreductase compare
RPSI07_RS16840 +0.8 2.3 DUF2252 domain-containing protein compare
RPSI07_RS24850 +0.8 1.0 retA reverse transcriptase compare
RPSI07_RS20130 +0.8 3.4 GMC family oxidoreductase compare
RPSI07_RS13850 +0.8 4.6 serine/threonine protein kinase compare
RPSI07_RS13230 +0.8 2.9 class I SAM-dependent methyltransferase compare
RPSI07_RS02310 +0.8 2.4 1-aminocyclopropane-1-carboxylate deaminase compare
RPSI07_RS14575 +0.8 1.6 3-hydroxyacyl-CoA dehydrogenase compare
RPSI07_RS20905 +0.8 1.2 ATP-dependent RNA helicase DbpA compare
RPSI07_RS05290 +0.8 2.1 ABC transporter ATP-binding protein compare
RPSI07_RS15600 +0.8 2.2 NAD(P)H:quinone oxidoreductase compare
RPSI07_RS20350 +0.7 2.5 pilus assembly protein PilX compare
RPSI07_RS06335 +0.7 1.5 4-oxalomesaconate tautomerase compare
RPSI07_RS08495 +0.7 1.2 DUF3562 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Ralstonia solanacearum PSI07 in stress experiments

For stress Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet across organisms