Experiment set8IT095 for Pseudomonas putida KT2440

Compare to:

72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

200 most important genes:

  gene name fitness t score description  
PP_1109 -4.7 -12.1 Transcriptional regulator, GntR family compare
PP_2388 -4.6 -3.2 Transporter, LysE family compare
PP_0422 -4.5 -3.1 Indole-3-glycerol phosphate synthase compare
PP_5104 -4.3 -3.0 thiazole synthase compare
PP_1988 -4.3 -3.0 3-isopropylmalate dehydrogenase compare
PP_4890 -4.3 -4.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_3511 -4.2 -5.0 Branched-chain-amino-acid aminotransferase compare
PP_0420 -4.1 -4.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4678 -3.9 -4.7 Ketol-acid reductoisomerase compare
PP_0966 -3.8 -2.6 Histidinol dehydrogenase compare
PP_0290 -3.7 -2.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5145 -3.7 -27.6 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_3376 -3.7 -3.6 putative phosphonate dehydrogenase compare
PP_5076 -3.6 -9.6 L-glutamate synthase(NADPH) alpha subunit compare
PP_3790 -3.6 -6.0 diaminopimelate epimerase compare
PP_2433 -3.6 -2.5 conserved protein of unknown function compare
PP_1985 -3.5 -2.4 3-isopropylmalate dehydratase large subunit compare
PP_0967 -3.5 -3.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4922 -3.5 -6.4 Phosphomethylpyrimidine synthase compare
PP_1111 -3.5 -3.4 putative Synthetase compare
PP_2348 -3.4 -4.0 Sensor histidine kinase compare
PP_5075 -3.4 -4.0 glutamate synthase (NADPH) beta subunit compare
PP_4680 -3.3 -7.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0965 -3.3 -5.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2390 -3.3 -6.2 Transcriptional regulator, LysR family compare
PP_0417 -3.2 -7.2 Anthranilate synthase component 1 compare
PP_2168 -3.2 -2.2 Transaldolase compare
PP_5289 -3.2 -2.2 Acetylglutamate kinase compare
PP_1348 -3.1 -4.3 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1110 -3.1 -3.0 serine acetyltransferase compare
PP_0293 -3.1 -2.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5346 -3.1 -6.2 pyruvate carboxylase subunit B compare
PP_1079 -3.1 -3.0 Ornithine carbamoyltransferase compare
PP_5348 -3.0 -7.9 Transcriptional regulator, LysR family compare
PP_3892 -2.9 -1.6 conserved protein of unknown function compare
PP_5347 -2.9 -6.5 pyruvate carboxylase subunit A compare
PP_0292 -2.9 -2.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1233 -2.9 -2.0 sulfurtransferase compare
PP_5155 -2.9 -2.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4679 -2.9 -2.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2327 -2.9 -3.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0421 -2.8 -5.1 Anthranilate phosphoribosyltransferase compare
PP_2001 -2.7 -6.5 O-succinylhomoserine sulfhydrylase compare
PP_4199 -2.7 -1.5 putative Lipoprotein compare
PP_1995 -2.7 -1.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1025 -2.7 -9.1 2-isopropylmalate synthase compare
PP_5128 -2.7 -6.8 Dihydroxy-acid dehydratase compare
PP_1088 -2.6 -2.6 Argininosuccinate synthase compare
PP_1231 -2.6 -1.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5097 -2.6 -8.2 homoserine O-acetyltransferase compare
PP_0735 -2.6 -1.8 molybdopterin-synthase adenylyltransferase compare
PP_0787 -2.5 -3.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0948 -2.4 -3.7 Phosphocarrier protein HPr compare
PP_5098 -2.4 -5.1 methionine biosynthesis protein MetW compare
PP_4994 -2.4 -1.6 conserved protein of unknown function compare
PP_5185 -2.4 -1.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0289 -2.3 -4.1 Imidazoleglycerol-phosphate dehydratase compare
PP_3821 -2.3 -5.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0362 -2.2 -9.1 Biotin synthase compare
PP_5327 -2.2 -4.5 putative phosphate ABC transporter, permease subunit compare
PP_2371 -2.2 -2.1 Sulphite reductase hemoprotein, beta subunit compare
PP_4782 -2.1 -1.5 Phosphomethylpyrimidine kinase compare
PP_0377 -2.1 -1.4 coenzyme PQQ synthesis protein D compare
PP_1986 -2.1 -1.4 3-isopropylmalate dehydratase small subunit compare
PP_0120 -2.0 -5.0 putative zinc ABC transporter compare
PP_5303 -1.9 -2.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_3505 -1.9 -2.3 conserved protein of unknown function compare
PP_1142 -1.9 -1.0 conserved protein of unknown function compare
PP_2714 -1.9 -4.4 Sensor histidine kinase compare
PP_0957 -1.9 -2.4 D-arabinose 5-phosphate isomerase compare
PP_1829 -1.8 -2.4 Hydrolase, alpha/beta fold family compare
PP_4424 -1.7 -2.6 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_2370 -1.7 -1.7 conserved protein of unknown function compare
PP_4058 -1.7 -1.2 1,4-alpha-glucan branching enzyme compare
PP_4480 -1.7 -4.6 arginine N-succinyltransferase, subunit alpha compare
PP_0184 -1.6 -1.1 Argininosuccinate lyase compare
PP_4684 -1.6 -2.5 conserved protein of unknown function with kinase-like domain compare
PP_0978 -1.6 -3.1 conserved protein of unknown function compare
PP_0117 -1.6 -4.0 Zn(2+) ABC transporter - permease subunit compare
PP_5652 -1.6 -1.1 conserved protein of unknown function, phage origin compare
PP_1017 -1.6 -3.9 mannose/glucose ABC transporter, permease protein compare
PP_1011 -1.6 -5.3 glucokinase compare
PP_0508 -1.6 -2.4 conserved exported protein of unknown function compare
PP_0086 -1.6 -1.8 conserved protein of unknown function compare
PP_4223 -1.5 -1.0 diaminobutyrate-2-oxoglutarate transaminase compare
PP_1697 -1.5 -1.9 transcriptional regulator, GntR family compare
PP_4813 -1.5 -6.0 PAP2 family protein/DedA family protein compare
PP_2345 -1.4 -2.3 conserved exported protein of unknown function compare
PP_1309 -1.4 -5.2 conserved exported protein of unknown function compare
PP_4909 -1.4 -1.4 phosphoserine phosphatase compare
PP_5313 -1.4 -1.6 DNA-binding protein HU-alpha compare
PP_2088 -1.4 -2.8 RNA polymerase sigma factor SigX compare
PP_4701 -1.4 -1.1 glucose-6-phosphate isomerase compare
PP_1355 -1.4 -11.4 Muropeptide permease AmpG compare
PP_t10 -1.4 -1.3 tRNA-Pro compare
PP_4828 -1.4 -0.9 Precorrin-8X methylmutase compare
PP_0880 -1.4 -2.2 dipeptide ABC transporter - putative membrane subunit compare
PP_5015 -1.4 -0.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1512 -1.3 -2.2 conserved protein of unknown function compare
PP_2307 -1.3 -1.9 conserved protein of unknown function compare
PP_4836 -1.3 -1.8 conserved exported protein of unknown function compare
PP_5628 -1.3 -1.3 conserved protein of unknown function compare
PP_0951 -1.3 -4.3 Ribosome hibernation promoting factor compare
PP_4785 -1.3 -4.4 conserved exported protein of unknown function compare
PP_0507 -1.3 -3.8 putative ABC efflux transporter, ATP-binding protein compare
PP_0276 -1.3 -1.1 Transcriptional regulator, Cro/CI family compare
PP_4254 -1.2 -1.8 conserved protein of unknown function compare
PP_4961 -1.2 -0.8 putative Lipoprotein compare
PP_3359 -1.2 -2.0 putative Hydroxycinnamic acid degradation regulator compare
PP_2328 -1.2 -1.4 Phosphoadenosine phosphosulfate reductase compare
PP_0593 -1.2 -0.6 putative ribosome-binding factor compare
PP_4143 -1.2 -2.3 conserved protein of unknown function compare
PP_1015 -1.2 -4.2 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_1898 -1.1 -0.8 MotA/TolQ/ExbB proton channel family protein compare
PP_1430 -1.1 -4.2 putative periplasmic serine endoprotease DegP-like compare
PP_5203 -1.1 -3.6 5-formyltetrahydrofolate cyclo-ligase compare
PP_4505 -1.1 -3.4 Sensor histidine kinase compare
PP_4793 -1.1 -2.0 conserved protein of unknown function compare
PP_1317 -1.1 -1.3 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_1426 -1.1 -5.7 L-aspartate oxidase compare
PP_0628 -1.1 -2.2 conserved protein of unknown function compare
PP_3314 -1.1 -2.6 Heat shock protein, HSP20 family compare
PP_4569 -1.1 -2.3 conserved protein of unknown function compare
PP_0261 -1.1 -2.9 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_3398 -1.1 -2.4 putative Curli fiber surface-exposed nucleator CsgB compare
PP_5345 -1.1 -2.7 Acetyltransferase, GNAT family compare
PP_5328 -1.1 -2.1 putative phosphate transport system permease protein compare
PP_3392 -1.1 -1.6 conserved protein of unknown function compare
PP_3409 -1.1 -1.3 putative Cobalamin biosynthesis protein cobE compare
PP_1812 -1.1 -1.7 conserved protein of unknown function compare
PP_1012 -1.1 -2.5 DNA-binding response regulator compare
PP_4503 -1.1 -1.8 DNA-binding response regulator compare
PP_1018 -1.0 -3.5 mannose/glucose ABC transporter - ATP binding subunit compare
PP_0083 -1.0 -0.7 tryptophan synthase beta chain compare
PP_3787 -1.0 -4.6 conserved protein of unknown function compare
PP_4681 -1.0 -2.0 conserved protein of unknown function compare
PP_0291 -1.0 -1.5 conserved protein of unknown function compare
PP_0435 -1.0 -7.8 Peptidase, M23/M37 family compare
PP_5007 -1.0 -1.0 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_3443 -1.0 -3.9 putative glyceraldehyde-3-phosphate dehydrogenase compare
PP_5507 -1.0 -2.1 protein of unknown function compare
PP_4060 -1.0 -6.2 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_0118 -1.0 -4.1 zinc import ATP-binding protein compare
PP_1833 -1.0 -2.3 conserved protein of unknown function compare
PP_2217 -1.0 -1.9 enoyl-CoA hydratase compare
PP_1513 -1.0 -1.5 Ribosomal RNA small subunit methyltransferase J compare
PP_5014 -1.0 -0.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_1731 -1.0 -1.9 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_3776 -1.0 -3.9 putative permease (RarD protein) compare
PP_4669 -1.0 -1.3 OmpA family protein compare
PP_5035 -0.9 -3.0 Histidine utilization repressor compare
PP_3098 -0.9 -1.3 conserved protein of unknown function compare
PP_3185 -0.9 -2.6 Pet18 protein compare
PP_3453 -0.9 -4.7 putative Sensor protein RstB compare
PP_5073 -0.9 -1.8 conserved exported protein of unknown function compare
PP_3786 -0.9 -5.1 aminotransferase compare
PP_1304 -0.9 -4.1 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1303 -0.9 -2.9 Sulfate adenylyltransferase subunit 2 compare
PP_1589 -0.9 -2.1 uridylyltransferase compare
PP_2203 -0.9 -1.0 conserved protein of unknown function compare
PP_2356 -0.9 -4.3 putative Phytochrome family protein compare
PP_4977 -0.9 -4.1 5,10-methylenetetrahydrofolate reductase compare
PP_0881 -0.9 -2.4 dipeptide ABC transporter - putative membrane subunit compare
PP_1826 -0.9 -1.2 Hydrolase, isochorismatase family compare
PP_1779 -0.9 -1.9 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_0082 -0.9 -0.6 tryptophan synthase alpha chain compare
PP_0434 -0.9 -5.4 Anhydro-N-acetylmuramic acid kinase compare
PP_1352 -0.9 -1.6 UPF0234 protein PP_1352 compare
PP_2192 -0.9 -2.9 putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein compare
PP_0695 -0.9 -2.7 conserved protein of unknown function compare
PP_0684 -0.9 -2.9 FKBP-type peptidyl-prolyl cis-trans isomerase compare
PP_0673 -0.9 -1.0 conserved protein of unknown function compare
PP_5051 -0.9 -1.5 conserved protein of unknown function compare
PP_3999 -0.9 -1.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2326 -0.9 -4.0 Universal stress protein compare
PP_2804 -0.9 -2.1 Hydrolase, alpha/beta fold family compare
PP_4379 -0.8 -2.9 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2661 -0.8 -2.4 conserved protein of unknown function compare
PP_5748 -0.8 -1.1 cytochrome c heme lyase subunit compare
PP_1016 -0.8 -2.9 mannose/glucose ABC transporter, permease protein compare
PP_3738 -0.8 -1.7 putative Transcriptional regulator VanR compare
PP_0984 -0.8 -1.6 conserved membrane protein of unknown function compare
PP_3637 -0.8 -1.1 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_3064 -0.8 -1.5 Phage tail protein compare
PP_1451 -0.8 -2.5 conserved exported protein of unknown function compare
PP_2514 -0.8 -2.6 4-carboxy-4-hydroxy-2-oxoadipic acid aldolase compare
PP_4263 -0.8 -1.0 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_0405 -0.8 -6.5 conserved protein of unknown function compare
PP_0236 -0.8 -1.1 NAD(P)H-dependent FMN reductase subunit compare
PP_4695 -0.8 -3.5 Sensory box histidine kinase compare
PP_2846 -0.8 -1.5 urease accessory protein compare
PP_4847 -0.8 -1.5 chaperone modulatory of CbpA co-chaperone protein compare
PP_0607 -0.8 -1.7 putative Type IV pili biogenesis protein FimT compare
PP_1328 -0.8 -1.3 Protein MraZ compare
PP_0022 -0.8 -0.6 hypothetical protein compare
PP_5571 -0.8 -1.0 conserved protein of unknown function compare
PP_2013 -0.8 -2.8 conserved protein of unknown function compare
PP_0406 -0.8 -2.9 Nucleotidyltransferase family protein compare
PP_1390 -0.8 -1.5 conserved exported protein of unknown function compare
PP_3730 -0.8 -0.9 Transcriptional regulatory protein AruR compare


Specific Phenotypes

For 2 genes in this experiment