Experiment set8IT095 for Agrobacterium fabrum C58

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

200 most important genes:

  gene name fitness t score description  
Atu4317 -3.9 -2.7 TetR family transcriptional regulator compare
Atu4773 -3.8 -1.3 two component response regulator compare
Atu2439 -3.4 -1.2 hypothetical protein compare
Atu3763 -3.0 -2.2 hypothetical protein compare
Atu4677 -3.0 -1.5 hypothetical protein compare
Atu1810 -2.9 -1.0 hypothetical protein compare
Atu1254 -2.7 -2.1 transcriptional regulator, ArsR family compare
Atu0769 -2.7 -2.2 protoheme IX farnesyltransferase compare
Atu1850 -2.6 -3.2 phosphoribosylformylglycinamidine synthetase II compare
Atu3730 -2.6 -1.8 hypothetical protein compare
Atu0026 -2.4 -0.9 hypothetical protein compare
Atu2728 -2.4 -4.1 beta (1-->2) glucan export ATP-binding protein compare
Atu1844 -2.3 -2.3 Phosphoribosylformylglycinamidine synthetase compare
Atu2073 -2.3 -3.7 membrane protein compare
Atu2684 -2.3 -1.4 hypothetical protein compare
Atu3491 -2.2 -3.0 hypothetical protein compare
Atu1030 -2.2 -1.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2057 -2.2 -3.3 DNA helicase II compare
Atu0399 -2.2 -4.8 dihydroorotase compare
Atu5540 -2.1 -0.9 hypothetical protein compare
Atu1028 -2.1 -1.8 hypothetical protein compare
Atu2554 -2.0 -2.2 lysyl-tRNA synthetase compare
Atu4187 -2.0 -1.1 tRNA-Met compare
Atu0361 -1.9 -2.0 transcriptional regulator compare
Atu3740 -1.9 -5.5 fructose bisphosphate aldolase compare
Atu5045 -1.9 -1.8 hypothetical protein compare
Atu0434 -1.9 -1.3 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3775 -1.9 -2.0 hypothetical protein compare
Atu2270 -1.8 -1.5 ATP-dependent Clp protease, proteolytic subunit compare
Atu0298 -1.8 -4.6 orotidine 5 compare
Atu5164 -1.8 -0.9 type IV secretion protein AvhB3 compare
Atu6165 -1.7 -1.2 hypothetical protein compare
Atu4469 -1.7 -2.2 iron ABC transporter permease compare
Atu3739 -1.7 -1.8 phosphoglycerate kinase compare
Atu1714 -1.6 -1.1 exonuclease III compare
Atu0647 -1.6 -4.8 phosphoribosylamine--glycine ligase compare
Atu2640 -1.6 -4.5 hypothetical protein compare
Atu5125 -1.6 -4.0 GntR family transcriptional regulator compare
Atu0912 -1.6 -1.0 Na+/H+ antiporter compare
Atu1845 -1.5 -2.4 phosphoribosylformylglycinamidine synthase I compare
Atu1359 -1.5 -0.8 dnaK deletion suppressor protein compare
Atu3469 -1.5 -1.5 phosphoglyceromutase compare
Atu0976 -1.5 -1.8 cycL protein compare
Atu4711 -1.5 -4.8 two component sensor kinase compare
Atu0999 -1.5 -5.3 magnesium transport protein compare
Atu3754 -1.5 -4.2 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2729 -1.5 -2.4 hypothetical protein compare
Atu2052 -1.5 -6.1 hypothetical protein compare
Atu0031 -1.4 -0.8 PTS system, IIA component compare
Atu1446 -1.4 -1.6 two component response regulator compare
Atu4161 -1.4 -1.3 hypothetical protein compare
Atu2432 -1.4 -1.4 hypothetical protein compare
Atu8032 -1.4 -2.2 hypothetical protein compare
Atu4471 -1.4 -6.8 ABC transporter substrate-binding protein compare
Atu1141 -1.4 -3.4 Phosphoribosylglycinamide synthetase compare
Atu8194 -1.3 -1.9 hypothetical protein compare
Atu4451 -1.3 -4.7 mannitol 2-dehydrogenase compare
Atu3162 -1.3 -5.6 LacI family transcriptional regulator compare
Atu8054 -1.3 -0.4 hypothetical protein compare
Atu0051 -1.3 -3.4 two component sensor kinase compare
Atu3468 -1.3 -0.6 hypothetical protein compare
Atu0477 -1.3 -1.3 hypothetical protein compare
Atu2832 -1.3 -2.5 tRNA modification GTPase compare
Atu0401 -1.3 -2.4 fructokinase compare
Atu1760 -1.3 -0.9 hypothetical protein compare
Atu0086 -1.3 -0.8 ribosome-binding factor A compare
Atu1417 -1.3 -4.7 enoyl-CoA hydratase compare
Atu2787 -1.3 -0.7 hypothetical protein compare
Atu0566 -1.3 -1.2 hypothetical protein compare
Atu0142 -1.2 -1.9 cytochrome o ubiquinol oxidase subunit II compare
Atu2335 -1.2 -1.2 hypothetical protein compare
Atu0400 -1.2 -2.5 orotate phosphoribosyltransferase compare
Atu3121 -1.2 -1.0 cold shock protein compare
Atu3910 -1.2 -2.9 LamB/YcsF family protein compare
Atu4468 -1.2 -4.4 iron transport ABC transporter permease compare
Atu1140 -1.2 -2.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0189 -1.2 -1.8 ABC transporter, membrane spanning protein (peptide) compare
Atu1566 -1.2 -0.8 hypothetical protein compare
Atu8088 -1.2 -1.4 hypothetical protein compare
Atu4418 -1.2 -2.3 glutaryl-CoA dehydrogenase compare
Atu0971 -1.2 -3.0 two component sensor kinase compare
Atu4446 -1.2 -5.4 hypothetical protein compare
Atu5517 -1.1 -2.1 hypothetical protein compare
Atu1163 -1.1 -1.0 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2293 -1.1 -0.9 hypothetical protein compare
Atu0941 -1.1 -0.6 hypothetical protein compare
Atu1344 -1.1 -1.3 hypothetical protein compare
Atu6098 -1.1 -0.5 transcriptional regulator, HTH family compare
Atu0640 -1.1 -1.3 hypothetical protein compare
Atu0107 -1.1 -1.4 hypothetical protein compare
Atu1602 -1.1 -2.8 transcriptional activator, Crp family compare
Atu0943 -1.1 -1.1 hypothetical protein compare
Atu2831 -1.1 -2.3 glucose inhibited division protein A compare
Atu8118 -1.1 -3.4 putative universal stress protein compare
Atu8052 -1.1 -1.0 hypothetical protein compare
Atu1076 -1.1 -2.2 colicin V production protein compare
Atu1527 -1.1 -2.7 nitrogen fixation protein FixS compare
Atu0062 -1.1 -4.5 transcriptional regulator, ROK family compare
Atu6036 -1.0 -0.7 entry-exclusion protein compare
Atu8082 -1.0 -1.4 hypothetical protein compare
Atu4502 -1.0 -3.1 cobalamin synthesis protein compare
Atu8029 -1.0 -1.0 hypothetical protein compare
Atu0486 -1.0 -2.0 dihydroorotate dehydrogenase compare
Atu2192 -1.0 -0.8 hypothetical protein compare
Atu0331 -1.0 -1.3 sigma-54 modulation protein compare
Atu2306 -1.0 -4.5 methionine aminopeptidase compare
Atu3755 -1.0 -2.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3746 -1.0 -2.9 hypothetical protein compare
Atu8162 -1.0 -0.7 hypothetical protein compare
Atu0470 -1.0 -1.2 hypothetical protein compare
Atu2368 -1.0 -0.6 hypothetical protein compare
Atu1620 -0.9 -4.4 triosephosphate isomerase compare
Atu1463 -0.9 -3.1 glycine cleavage system component H compare
Atu0050 -0.9 -2.6 two component response regulator compare
Atu8158 -0.9 -1.9 hypothetical protein compare
Atu2238 -0.9 -3.5 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu3478 -0.9 -5.1 3-methylcrotonoyl-CoA carboxylase beta subunit compare
Atu1517 -0.9 -2.8 hypothetical protein compare
Atu4505 -0.9 -3.2 LacI family transcriptional regulator compare
Atu3963 -0.9 -3.8 GntR family transcriptional regulator compare
Atu1774 -0.9 -3.7 ABC transporter, substrate binding protein (peptide) compare
Atu0188 -0.9 -1.2 ABC transporter, membrane spanning protein (peptide) compare
Atu4825 -0.9 -3.2 dehydrogenase compare
Atu0784 -0.9 -1.3 hypothetical protein compare
Atu0017 -0.9 -1.5 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1099 -0.9 -3.8 hypothetical protein compare
Atu1739 -0.9 -2.6 permease compare
Atu0447 -0.9 -2.9 hypothetical protein compare
Atu3579 -0.9 -2.0 lactoylglutathione lyase compare
Atu4133 -0.9 -1.9 hypothetical protein compare
Atu1880 -0.9 -1.6 ABC transporter, membrane spanning protein (amino acid) compare
Atu1694 -0.9 -1.5 hypothetical protein compare
Atu0578 -0.9 -2.8 FlbT post-transcriptional regulator of flagellin compare
Atu5136 -0.9 -2.5 transcriptional repressor of the blcABC operon compare
Atu1449 -0.8 -3.7 potassium uptake protein compare
Atu5468 -0.8 -1.3 hypothetical protein compare
Atu1468 -0.8 -2.0 hypothetical protein compare
Atu2274 -0.8 -2.9 cation efflux system protein compare
Atu1777 -0.8 -2.0 hypothetical protein compare
Atu1364 -0.8 -2.8 ATP-dependent Clp protease, ATP-binding subunit compare
Atu4470 -0.8 -2.4 iron ABC transporter ATPase compare
Atu4108 -0.8 -3.4 ribonuclease D compare
Atu0346 -0.8 -1.1 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2258 -0.8 -1.4 acetyltransferase compare
Atu3627 -0.8 -0.9 hypothetical protein compare
Atu1529 -0.8 -2.5 nitrogen fixation protein FixH compare
Atu4077 -0.8 -4.1 glycogen branching protein compare
Atu4616 -0.8 -0.7 dTDP-4-dehydrorhamnose reductase compare
Atu2633 -0.8 -1.0 RhtB family transporter compare
Atu6042 -0.8 -3.1 autoinducer synthesis protein compare
Atu3392 -0.8 -2.1 methyltransferase compare
Atu1838 -0.8 -2.2 ABC transporter, substrate binding protein (amino acid) compare
Atu1038 -0.8 -2.1 two component response regulator compare
Atu5501 -0.8 -1.0 hypothetical protein compare
Atu0827 -0.8 -2.1 hypothetical protein compare
Atu1677 -0.8 -1.3 queuine tRNA-ribosyltransferase compare
Atu1005 -0.8 -1.5 hypothetical protein compare
Atu0421 -0.8 -0.6 ABC transporter, membrane spanning protein compare
Atu3727 -0.8 -1.8 hypothetical protein compare
Atu1685 -0.7 -0.5 hypothetical protein compare
Atu4148 -0.7 -2.3 UDP-glucuronic acid epimerase compare
Atu6149 -0.7 -2.6 hypothetical protein compare
Atu1021 -0.7 -0.7 outer membrane protein compare
Atu1355 -0.7 -2.6 hypothetical protein compare
Atu0464 -0.7 -3.0 hypothetical protein compare
Atu1052 -0.7 -1.3 hypothetical protein compare
Atu3835 -0.7 -2.1 hypothetical protein compare
Atu3792 -0.7 -3.7 L-asparagine permease compare
Atu4459 -0.7 -2.6 6-O-methylguanine DNA methyltransferase compare
Atu1484 -0.7 -1.5 transcriptional regulator compare
Atu1252 -0.7 -1.7 hypothetical protein compare
Atu6131 -0.7 -2.0 TraR Antiactivator compare
Atu1149 -0.7 -0.8 adenylate cyclase compare
Atu3603 -0.7 -1.1 two component response regulator compare
Atu0190 -0.7 -2.4 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0201 -0.7 -0.9 hypothetical protein compare
Atu4824 -0.7 -3.1 IclR family transcriptional regulator compare
Atu4205 -0.7 -3.0 TetR family transcriptional regulator compare
Atu3292 -0.7 -4.0 alanine racemase compare
Atu0535 -0.7 -2.0 hypothetical protein compare
Atu3759 -0.7 -0.7 hypothetical protein compare
Atu2117 -0.7 -3.1 lytic murein transglycosylase compare
Atu0780 -0.7 -3.6 hypothetical protein compare
Atu3898 -0.7 -2.8 DeoR family transcriptional regulator compare
Atu4144 -0.7 -0.5 hypothetical protein compare
Atu3911 -0.7 -2.8 hypothetical protein compare
Atu1447 -0.7 -1.3 two component sensor kinase compare
Atu8039 -0.7 -2.2 hypothetical protein compare
Atu0895 -0.7 -1.7 ABC transporter, substrate binding protein compare
Atu2115 -0.7 -2.3 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu0973 -0.7 -3.1 cycH protein compare
Atu1129 -0.7 -2.5 excinuclease ABC chain C compare
Atu3479 -0.7 -3.5 3-methylcrotonyl-CoA carboxylase subunit alpha compare
Atu1339 -0.7 -1.3 ribonuclease E compare
Atu0977 -0.7 -1.7 serine protease DO-like protease compare
Atu2532 -0.7 -1.7 transcriptional regulator, MarR family compare
Atu5205 -0.7 -2.1 hypothetical protein compare
Atu1464 -0.7 -2.1 glycine cleavage system T protein, aminomethyltransferase compare
Atu4533 -0.6 -3.6 amino acid ABC transporter ATPase/permease compare
Atu3572 -0.6 -3.3 transcriptional regulator compare


Specific Phenotypes

For 2 genes in this experiment