Experiment set8IT093 for Pseudomonas putida KT2440

Compare to:

48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

200 most important genes:

  gene name fitness t score description  
PP_4890 -5.2 -3.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_0422 -4.7 -3.2 Indole-3-glycerol phosphate synthase compare
PP_1110 -4.5 -3.1 serine acetyltransferase compare
PP_3511 -4.3 -5.2 Branched-chain-amino-acid aminotransferase compare
PP_5104 -4.3 -4.2 thiazole synthase compare
PP_0965 -4.1 -2.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1988 -4.1 -4.9 3-isopropylmalate dehydrogenase compare
PP_4680 -4.0 -3.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1109 -3.9 -13.9 Transcriptional regulator, GntR family compare
PP_0966 -3.9 -2.7 Histidinol dehydrogenase compare
PP_4678 -3.9 -6.5 Ketol-acid reductoisomerase compare
PP_3790 -3.9 -6.5 diaminopimelate epimerase compare
PP_0967 -3.9 -2.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4922 -3.8 -6.4 Phosphomethylpyrimidine synthase compare
PP_0420 -3.8 -6.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2433 -3.7 -2.5 conserved protein of unknown function compare
PP_1985 -3.7 -2.5 3-isopropylmalate dehydratase large subunit compare
PP_0290 -3.7 -3.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5076 -3.7 -10.8 L-glutamate synthase(NADPH) alpha subunit compare
PP_1079 -3.6 -2.5 Ornithine carbamoyltransferase compare
PP_2388 -3.6 -4.2 Transporter, LysE family compare
PP_5145 -3.5 -27.2 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_5155 -3.5 -2.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2348 -3.4 -4.0 Sensor histidine kinase compare
PP_3376 -3.4 -4.6 putative phosphonate dehydrogenase compare
PP_5289 -3.3 -2.3 Acetylglutamate kinase compare
PP_0421 -3.3 -4.5 Anthranilate phosphoribosyltransferase compare
PP_5348 -3.3 -7.9 Transcriptional regulator, LysR family compare
PP_2001 -3.2 -6.6 O-succinylhomoserine sulfhydrylase compare
PP_5347 -3.2 -6.2 pyruvate carboxylase subunit A compare
PP_0293 -3.2 -2.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2168 -3.2 -3.1 Transaldolase compare
PP_1348 -3.2 -4.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0630 -3.2 -1.7 DNA gyrase inhibitor YacG compare
PP_0417 -3.2 -8.4 Anthranilate synthase component 1 compare
PP_5075 -3.1 -6.0 glutamate synthase (NADPH) beta subunit compare
PP_2390 -3.1 -6.3 Transcriptional regulator, LysR family compare
PP_2327 -3.1 -3.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5346 -3.1 -6.3 pyruvate carboxylase subunit B compare
PP_0787 -3.1 -3.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1111 -3.1 -4.7 putative Synthetase compare
PP_1233 -3.0 -2.1 sulfurtransferase compare
PP_5128 -3.0 -7.1 Dihydroxy-acid dehydratase compare
PP_1088 -2.8 -1.9 Argininosuccinate synthase compare
PP_4679 -2.8 -2.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1231 -2.7 -1.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0735 -2.7 -1.8 molybdopterin-synthase adenylyltransferase compare
PP_0120 -2.5 -5.9 putative zinc ABC transporter compare
PP_4994 -2.5 -1.8 conserved protein of unknown function compare
PP_5097 -2.5 -8.9 homoserine O-acetyltransferase compare
PP_0289 -2.5 -4.2 Imidazoleglycerol-phosphate dehydratase compare
PP_5185 -2.5 -1.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_3821 -2.5 -6.4 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2370 -2.4 -1.6 conserved protein of unknown function compare
PP_0246 -2.4 -2.3 two-component system DNA-binding response transcriptional dual regulator compare
PP_0362 -2.4 -9.9 Biotin synthase compare
PP_1568 -2.3 -1.8 conserved protein of unknown function compare
PP_2371 -2.3 -2.2 Sulphite reductase hemoprotein, beta subunit compare
PP_1995 -2.3 -3.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0292 -2.3 -2.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2714 -2.3 -5.0 Sensor histidine kinase compare
PP_4782 -2.2 -1.5 Phosphomethylpyrimidine kinase compare
PP_1986 -2.2 -1.5 3-isopropylmalate dehydratase small subunit compare
PP_3508 -2.2 -3.0 Protein CobW compare
PP_2520 -2.2 -2.1 conserved protein of unknown function compare
PP_3505 -2.1 -2.5 conserved protein of unknown function compare
PP_1025 -2.1 -7.2 2-isopropylmalate synthase compare
PP_2217 -2.0 -3.0 enoyl-CoA hydratase compare
PP_4143 -2.0 -3.8 conserved protein of unknown function compare
PP_1142 -2.0 -1.1 conserved protein of unknown function compare
PP_5098 -2.0 -5.5 methionine biosynthesis protein MetW compare
PP_4669 -2.0 -1.9 OmpA family protein compare
PP_4058 -1.9 -1.3 1,4-alpha-glucan branching enzyme compare
PP_0948 -1.9 -3.5 Phosphocarrier protein HPr compare
PP_4480 -1.8 -5.2 arginine N-succinyltransferase, subunit alpha compare
PP_5295 -1.8 -1.5 conserved protein of unknown function compare
PP_0291 -1.8 -2.1 conserved protein of unknown function compare
PP_2328 -1.7 -1.2 Phosphoadenosine phosphosulfate reductase compare
PP_5327 -1.7 -4.5 putative phosphate ABC transporter, permease subunit compare
PP_0184 -1.7 -1.6 Argininosuccinate lyase compare
PP_3924 -1.6 -2.2 conserved protein of unknown function compare
PP_1826 -1.6 -1.6 Hydrolase, isochorismatase family compare
PP_4684 -1.6 -2.9 conserved protein of unknown function with kinase-like domain compare
PP_1097 -1.6 -1.0 Methionine--tRNA ligase compare
PP_4909 -1.6 -1.5 phosphoserine phosphatase compare
PP_1011 -1.6 -5.2 glucokinase compare
PP_4199 -1.5 -1.1 putative Lipoprotein compare
PP_2631 -1.5 -1.8 putative cellulose biosynthesis, BcsF/YhjT compare
PP_5015 -1.5 -1.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5225 -1.5 -1.4 frataxin compare
PP_3043 -1.5 -1.5 conserved protein of unknown function compare
PP_4296 -1.4 -2.0 conserved exported protein of unknown function compare
PP_1012 -1.4 -3.2 DNA-binding response regulator compare
PP_3730 -1.4 -1.6 Transcriptional regulatory protein AruR compare
PP_2253 -1.3 -2.2 Transcriptional regulator, GntR family compare
PP_1860 -1.3 -3.5 Organic hydroperoxide resistance transcriptional regulator compare
PP_0406 -1.3 -4.9 Nucleotidyltransferase family protein compare
PP_0261 -1.3 -3.8 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_1898 -1.3 -0.9 MotA/TolQ/ExbB proton channel family protein compare
PP_5203 -1.3 -4.3 5-formyltetrahydrofolate cyclo-ligase compare
PP_5008 -1.3 -1.3 Poly granule-associated protein compare
PP_1309 -1.3 -5.1 conserved exported protein of unknown function compare
PP_4060 -1.3 -7.7 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_4503 -1.3 -2.2 DNA-binding response regulator compare
PP_1679 -1.2 -1.7 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_0593 -1.2 -0.6 putative ribosome-binding factor compare
PP_4952 -1.2 -1.6 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_0025 -1.2 -1.8 hypothetical protein compare
PP_1016 -1.2 -5.6 mannose/glucose ABC transporter, permease protein compare
PP_2928 -1.2 -4.3 Saccharopine dehydrogenase compare
PP_4238 -1.2 -2.1 conserved protein of unknown function compare
PP_1787 -1.2 -2.6 conserved protein of unknown function compare
PP_1729 -1.2 -1.5 conserved protein of unknown function compare
PP_4650 -1.2 -3.8 Ubiquinol oxidase subunit II, cyanide insensitive compare
PP_1355 -1.2 -9.7 Muropeptide permease AmpG compare
PP_1017 -1.2 -3.9 mannose/glucose ABC transporter, permease protein compare
PP_1987 -1.2 -1.8 Methlytransferase, UbiE/COQ5 family compare
PP_0092 -1.2 -2.7 putative lipoprotein compare
PP_4897 -1.1 -3.0 N-acetylmuramoyl-L-alanine amidase compare
PP_0435 -1.1 -8.5 Peptidase, M23/M37 family compare
PP_1426 -1.1 -6.1 L-aspartate oxidase compare
PP_4396 -1.1 -2.1 conserved protein of unknown function compare
PP_3460 -1.1 -1.7 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_5048 -1.1 -3.4 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0117 -1.1 -3.1 Zn(2+) ABC transporter - permease subunit compare
PP_4879 -1.1 -2.0 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_5014 -1.1 -0.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_5303 -1.1 -1.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1018 -1.1 -3.8 mannose/glucose ABC transporter - ATP binding subunit compare
PP_5162 -1.1 -1.6 conserved exported protein of unknown function compare
PP_0951 -1.1 -4.0 Ribosome hibernation promoting factor compare
PP_3806 -1.1 -2.0 Hydrolase, isochorismatase family compare
PP_3037 -1.1 -1.8 C4-type zinc finger protein, DksA/TraR family compare
PP_0566 -1.1 -1.3 translation-related factor compare
PP_0307 -1.0 -1.8 conserved exported protein of unknown function compare
PP_5035 -1.0 -3.3 Histidine utilization repressor compare
PP_1304 -1.0 -4.3 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0695 -1.0 -3.1 conserved protein of unknown function compare
PP_0683 -1.0 -2.2 conserved protein of unknown function compare
PP_0082 -1.0 -0.7 tryptophan synthase alpha chain compare
PP_1176 -1.0 -0.9 conserved protein of unknown function compare
PP_3185 -1.0 -2.7 Pet18 protein compare
PP_1074 -1.0 -2.3 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_0984 -1.0 -1.9 conserved membrane protein of unknown function compare
PP_1812 -1.0 -1.5 conserved protein of unknown function compare
PP_1575 -1.0 -1.6 conserved protein of unknown function compare
PP_2192 -1.0 -3.1 putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein compare
PP_1015 -1.0 -3.6 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_3999 -1.0 -1.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2499 -1.0 -1.0 conserved protein of unknown function compare
PP_2950 -1.0 -2.9 conserved protein of unknown function compare
PP_3453 -1.0 -5.1 putative Sensor protein RstB compare
PP_3105 -0.9 -1.4 conserved membrane protein of unknown function compare
PP_2060 -0.9 -1.4 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_0083 -0.9 -1.1 tryptophan synthase beta chain compare
PP_3876 -0.9 -1.4 conserved protein of unknown function compare
PP_0516 -0.9 -2.1 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_0434 -0.9 -5.6 Anhydro-N-acetylmuramic acid kinase compare
PP_4813 -0.9 -4.4 PAP2 family protein/DedA family protein compare
PP_1678 -0.9 -1.6 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_2189 -0.9 -1.4 conserved protein of unknown function compare
PP_4262 -0.9 -0.9 Cytochrome oxidase maturation protein, cbb3-type compare
PP_0505 -0.9 -2.6 conserved protein of unknown function compare
PP_5345 -0.9 -2.5 Acetyltransferase, GNAT family compare
PP_2737 -0.9 -1.0 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_0118 -0.9 -3.9 zinc import ATP-binding protein compare
PP_0303 -0.9 -2.1 dehydrocarnitine cleavage enzyme compare
PP_5525 -0.9 -2.1 conserved exported protein of unknown function compare
PP_1677 -0.9 -2.2 Adenosyl-cobyric acid synthase compare
PP_0910 -0.9 -2.4 conserved exported protein of unknown function compare
PP_4830 -0.9 -2.1 precorrin-6Y C(5,15)-methyltransferase compare
PP_2326 -0.9 -4.4 Universal stress protein compare
PP_4701 -0.9 -0.8 glucose-6-phosphate isomerase compare
PP_2883 -0.9 -1.4 conserved protein of unknown function compare
PP_5594 -0.8 -1.7 conserved protein of unknown function compare
PP_0881 -0.8 -2.5 dipeptide ABC transporter - putative membrane subunit compare
PP_4505 -0.8 -2.8 Sensor histidine kinase compare
PP_5359 -0.8 -1.5 CobW/P47K family protein compare
PP_4685 -0.8 -2.9 conserved protein of unknown function compare
PP_0306 -0.8 -1.8 conserved protein of unknown function compare
PP_4829 -0.8 -1.5 putative precorrin-3B synthase compare
PP_1589 -0.8 -2.3 uridylyltransferase compare
PP_3265 -0.8 -1.9 putative phosphohydrolase of unknown function compare
PP_1164 -0.8 -1.2 Transcriptional regulator, LysR family compare
PP_0405 -0.8 -6.7 conserved protein of unknown function compare
PP_4828 -0.8 -0.8 Precorrin-8X methylmutase compare
PP_1008 -0.8 -1.1 RNA polymerase subunit sigma-24 compare
PP_3408 -0.8 -1.7 cobalt transporter subunit A compare
PP_2232 -0.8 -2.2 XRE family transcriptional regulator compare
PP_3647 -0.8 -1.8 putative Oxidoreductase compare
PP_0066 -0.8 -2.6 Ribosomal RNA small subunit methyltransferase B compare
PP_5426 -0.8 -2.9 conserved protein of unknown function compare
PP_4838 -0.8 -4.5 Outer membrane copper receptor OprC compare
PP_4929 -0.8 -2.5 Transcriptional regulator, LysR family compare
PP_1303 -0.8 -2.6 Sulfate adenylyltransferase subunit 2 compare
PP_4722 -0.8 -1.3 Transcription elongation factor GreA compare
PP_3908 -0.8 -2.0 conserved protein of unknown function compare
PP_4940 -0.8 -2.1 Putative glycosyltransferase compare
PP_5100 -0.8 -1.8 dITP/XTP pyrophosphatase compare
PP_4419 -0.8 -1.8 transposase compare


Specific Phenotypes

For 1 genes in this experiment