Experiment set8IT091 for Agrobacterium fabrum C58

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

200 most important genes:

  gene name fitness t score description  
Atu6098 -4.1 -0.9 transcriptional regulator, HTH family compare
Atu4317 -3.8 -3.6 TetR family transcriptional regulator compare
Atu4773 -3.5 -1.6 two component response regulator compare
Atu1030 -3.3 -1.9 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1446 -2.5 -1.9 two component response regulator compare
Atu1844 -2.4 -3.1 Phosphoribosylformylglycinamidine synthetase compare
Atu3598 -2.3 -1.9 thiol:disulfide interchange protein compare
Atu0434 -2.3 -2.2 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0723 -2.3 -2.0 FAD dependent oxidoreductase compare
Atu0399 -2.1 -6.0 dihydroorotase compare
Atu3121 -2.0 -1.4 cold shock protein compare
Atu0784 -2.0 -3.2 hypothetical protein compare
Atu3469 -2.0 -1.8 phosphoglyceromutase compare
Atu3740 -1.9 -7.8 fructose bisphosphate aldolase compare
Atu1075 -1.9 -4.9 amidophosphoribosyltransferase compare
Atu2125 -1.8 -1.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu1685 -1.8 -0.9 hypothetical protein compare
Atu4469 -1.8 -2.7 iron ABC transporter permease compare
Atu3730 -1.8 -1.6 hypothetical protein compare
Atu0999 -1.8 -7.8 magnesium transport protein compare
Atu1028 -1.7 -2.0 hypothetical protein compare
Atu1810 -1.7 -1.1 hypothetical protein compare
Atu2073 -1.7 -3.0 membrane protein compare
Atu3763 -1.7 -1.6 hypothetical protein compare
Atu2620 -1.7 -1.2 hypothetical protein compare
Atu0912 -1.6 -1.3 Na+/H+ antiporter compare
Atu1850 -1.6 -2.1 phosphoribosylformylglycinamidine synthetase II compare
Atu1327 -1.5 -2.1 NADH-ubiquinone oxidoreductase compare
Atu4451 -1.5 -6.5 mannitol 2-dehydrogenase compare
Atu4468 -1.5 -6.4 iron transport ABC transporter permease compare
Atu0188 -1.5 -3.1 ABC transporter, membrane spanning protein (peptide) compare
Atu0031 -1.5 -0.9 PTS system, IIA component compare
Atu0051 -1.5 -4.3 two component sensor kinase compare
Atu3750 -1.4 -2.8 thiamine-phosphate pyrophosphorylase compare
Atu0190 -1.4 -6.1 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1417 -1.4 -6.6 enoyl-CoA hydratase compare
Atu1140 -1.4 -2.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0421 -1.4 -1.0 ABC transporter, membrane spanning protein compare
Atu1339 -1.4 -2.2 ribonuclease E compare
Atu8162 -1.4 -1.2 hypothetical protein compare
Atu0953 -1.4 -0.7 hypothetical protein compare
Atu3461 -1.4 -1.7 GntR family transcriptional regulator compare
Atu2832 -1.4 -3.1 tRNA modification GTPase compare
Atu0401 -1.4 -3.8 fructokinase compare
Atu1503 -1.3 -0.9 hypothetical protein compare
Atu5115 -1.3 -1.4 hypothetical protein compare
Atu2052 -1.3 -5.6 hypothetical protein compare
Atu6009 -1.3 -3.8 indole-3-lactate synthase compare
Atu4470 -1.3 -4.7 iron ABC transporter ATPase compare
Atu1021 -1.3 -1.5 outer membrane protein compare
Atu1468 -1.3 -5.1 hypothetical protein compare
Atu0189 -1.3 -1.9 ABC transporter, membrane spanning protein (peptide) compare
Atu4446 -1.3 -5.2 hypothetical protein compare
Atu3754 -1.3 -3.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0422 -1.2 -1.2 ABC transporter, membrane spanning protein compare
Atu2640 -1.2 -3.8 hypothetical protein compare
Atu2057 -1.2 -2.3 DNA helicase II compare
Atu2831 -1.2 -3.1 glucose inhibited division protein A compare
Atu1308 -1.2 -3.8 aspartate carbamoyl transferase catalytic subunit compare
Atu1701 -1.2 -1.5 protein-L-isoaspartate O-methyltransferase compare
Atu2728 -1.2 -3.3 beta (1-->2) glucan export ATP-binding protein compare
Atu2432 -1.2 -1.4 hypothetical protein compare
Atu4471 -1.2 -5.7 ABC transporter substrate-binding protein compare
Atu2433 -1.1 -0.8 hypothetical protein compare
Atu2439 -1.1 -0.9 hypothetical protein compare
Atu0769 -1.1 -1.1 protoheme IX farnesyltransferase compare
Atu0876 -1.1 -1.1 superoxide dismutase compare
Atu2578 -1.1 -2.2 cAMP-dependent protein kinase regulatory subunit compare
Atu0977 -1.1 -3.9 serine protease DO-like protease compare
Atu0580 -1.1 -2.3 flagellar biosynthetic protein compare
Atu0647 -1.1 -2.5 phosphoribosylamine--glycine ligase compare
Atu3727 -1.1 -2.4 hypothetical protein compare
Atu1620 -1.1 -5.3 triosephosphate isomerase compare
Atu1845 -1.1 -1.6 phosphoribosylformylglycinamidine synthase I compare
Atu1449 -1.0 -3.4 potassium uptake protein compare
Atu0050 -1.0 -3.2 two component response regulator compare
Atu0346 -1.0 -1.5 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1774 -1.0 -4.9 ABC transporter, substrate binding protein (peptide) compare
Atu1573 -1.0 -0.9 hypothetical protein compare
Atu4418 -1.0 -2.3 glutaryl-CoA dehydrogenase compare
Atu1534 -1.0 -3.5 cytochrome-c oxidase, FixP chain compare
Atu1683 -1.0 -1.8 hypothetical protein compare
Atu1535 -1.0 -1.8 cytochrome c oxidase, FixQ chain compare
Atu2286 -1.0 -1.1 hypothetical protein compare
Atu4144 -1.0 -0.7 hypothetical protein compare
Atu0464 -1.0 -4.7 hypothetical protein compare
Atu3162 -1.0 -3.1 LacI family transcriptional regulator compare
Atu3674 -1.0 -1.7 hypothetical protein compare
Atu5475 -1.0 -1.5 hypothetical protein compare
Atu0486 -1.0 -2.1 dihydroorotate dehydrogenase compare
Atu1527 -1.0 -2.2 nitrogen fixation protein FixS compare
Atu2662 -1.0 -0.8 acetyltransferase compare
Atu4505 -1.0 -3.9 LacI family transcriptional regulator compare
Atu3755 -0.9 -2.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu5125 -0.9 -3.2 GntR family transcriptional regulator compare
Atu0400 -0.9 -1.8 orotate phosphoribosyltransferase compare
Atu8159 -0.9 -1.1 hypothetical protein compare
Atu1141 -0.9 -2.1 Phosphoribosylglycinamide synthetase compare
Atu1467 -0.9 -2.9 hypothetical protein compare
Atu1163 -0.9 -0.9 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2554 -0.9 -1.2 lysyl-tRNA synthetase compare
Atu2235 -0.9 -1.2 hypothetical protein compare
Atu1439 -0.9 -1.3 hypothetical protein compare
Atu1359 -0.9 -0.6 dnaK deletion suppressor protein compare
Atu1103 -0.9 -1.9 rRNA-adenine N6,N6-dimethyltransferase compare
Atu1185 -0.9 -1.8 hypothetical protein compare
Atu1225 -0.9 -1.0 hypothetical protein compare
Atu3480 -0.9 -4.7 hydroxymethylglutaryl-CoA lyase compare
Atu2436 -0.9 -1.9 hypothetical protein compare
Atu0893 -0.9 -2.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu1323 -0.9 -1.8 hypothetical protein compare
Atu6131 -0.9 -2.6 TraR Antiactivator compare
Atu2768 -0.9 -3.3 hypothetical protein compare
Atu6165 -0.9 -0.9 hypothetical protein compare
Atu2207 -0.9 -2.2 two component sensor kinase compare
Atu2115 -0.9 -3.6 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu1307 -0.8 -1.8 dihydroorotase compare
Atu0689 -0.8 -4.9 ribosomal large subunit pseudouridine synthase B compare
Atu4616 -0.8 -0.8 dTDP-4-dehydrorhamnose reductase compare
Atu4685 -0.8 -4.0 LacI family transcriptional regulator compare
Atu0471 -0.8 -1.8 hypothetical protein compare
Atu0895 -0.8 -1.9 ABC transporter, substrate binding protein compare
Atu1110 -0.8 -1.3 cytosol aminopeptidase compare
Atu0812 -0.8 -1.6 hypothetical protein compare
Atu0141 -0.8 -0.7 cytochrome O ubiquinol oxidase subunit I compare
Atu0925 -0.8 -1.7 hypothetical protein compare
Atu0040 -0.8 -0.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4077 -0.8 -4.1 glycogen branching protein compare
Atu4108 -0.8 -3.9 ribonuclease D compare
Atu1602 -0.8 -2.9 transcriptional activator, Crp family compare
Atu1760 -0.8 -0.7 hypothetical protein compare
Atu0361 -0.8 -0.8 transcriptional regulator compare
Atu2192 -0.8 -0.7 hypothetical protein compare
Atu4824 -0.8 -4.4 IclR family transcriptional regulator compare
Atu5160 -0.8 -1.5 transcriptional regulator protein compare
Atu2634 -0.8 -1.2 hypothetical protein compare
Atu0295 -0.8 -1.8 hypothetical protein compare
Atu3505 -0.8 -3.9 3-hydroxyisobutyryl-CoA hydrolase compare
Atu1739 -0.8 -1.9 permease compare
Atu0692 -0.8 -3.5 glutathione-regulated potassium-efflux system protein compare
Atu2045 -0.7 -3.6 HFLK protein compare
Atu5511 -0.7 -2.8 hypothetical protein compare
Atu1149 -0.7 -0.9 adenylate cyclase compare
Atu4166 -0.7 -1.1 UDP-glucose 4-epimerase compare
Atu0344 -0.7 -2.3 hypothetical protein compare
Atu0062 -0.7 -3.4 transcriptional regulator, ROK family compare
Atu3739 -0.7 -1.2 phosphoglycerate kinase compare
Atu4707 -0.7 -3.3 NADH ubiquinone oxidoreductase chain F compare
Atu6053 -0.7 -3.3 conserved hypothetical protein compare
Atu2184 -0.7 -3.3 transcriptional regulator, AsnC family compare
Atu4153 -0.7 -3.2 aldehyde dehydrogenase compare
Atu5186 -0.7 -1.1 hypothetical protein compare
Atu0837 -0.7 -3.1 transcriptional regulator, MarR family compare
Atu1725 -0.7 -2.1 hypothetical protein compare
Atu1364 -0.7 -2.7 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0976 -0.7 -1.6 cycL protein compare
Atu0119 -0.7 -0.6 hypothetical protein compare
Atu2772 -0.7 -2.7 Invasion protein A compare
Atu8052 -0.7 -0.8 hypothetical protein compare
Atu1529 -0.7 -2.1 nitrogen fixation protein FixH compare
Atu8096 -0.7 -1.0 hypothetical protein compare
Atu0026 -0.7 -0.4 hypothetical protein compare
Atu2352 -0.7 -0.8 hypothetical protein compare
Atu2797 -0.7 -1.6 cobalamin biosynthesis protein compare
Atu4217 -0.7 -0.6 TetR family transcriptional regulator compare
Atu0971 -0.7 -2.4 two component sensor kinase compare
Atu2041 -0.7 -1.0 acetyltransferase compare
Atu3913 -0.7 -2.2 biotin carboxylase compare
Atu8136 -0.7 -3.0 hypothetical protein compare
Atu0035 -0.7 -3.3 phosphoenolpyruvate carboxykinase compare
Atu1176 -0.7 -1.6 hypothetical protein compare
Atu2169 -0.7 -3.5 hypothetical protein compare
Atu0071 -0.7 -3.4 ribonucleoside-diphosphate reductase 2 beta chain compare
Atu4502 -0.7 -3.4 cobalamin synthesis protein compare
Atu1904 -0.7 -1.5 transcriptional regulator compare
Atu0943 -0.7 -0.7 hypothetical protein compare
Atu3718 -0.7 -2.4 hypothetical protein compare
Atu3583 -0.7 -1.8 hypothetical protein compare
Atu1522 -0.7 -2.7 transcriptional regulator, LacI family compare
Atu5437 -0.7 -2.2 hypothetical protein compare
Atu1258 -0.7 -1.8 ATP-dependent Clp protease, proteolytic subunit compare
Atu5501 -0.7 -1.1 hypothetical protein compare
Atu3486 -0.7 -1.2 DeoR family transcriptional regulator compare
Atu8115 -0.6 -3.7 Hypothetical Protein compare
Atu0107 -0.6 -1.4 hypothetical protein compare
Atu8082 -0.6 -1.0 hypothetical protein compare
Atu4133 -0.6 -1.3 hypothetical protein compare
Atu2238 -0.6 -3.1 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu2793 -0.6 -1.9 cobyrinic acid a,c-diamide synthase compare
Atu0520 -0.6 -2.0 chemotaxis receiver protein compare
Atu1038 -0.6 -1.8 two component response regulator compare
Atu2237 -0.6 -1.8 cytochrome c1 compare
Atu3910 -0.6 -1.5 LamB/YcsF family protein compare
Atu3908 -0.6 -3.7 GntR family transcriptional regulator compare
Atu1678 -0.6 -2.6 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu2799 -0.6 -1.6 precorrin-6x reductase compare
Atu3249 -0.6 -2.0 septum formation inhibitor compare
Atu1074 -0.6 -3.3 NAD/NADP dependent oxidoreductase compare
Atu5064 -0.6 -2.7 MarR family transcriptional regulator compare
Atu2682 -0.6 -1.2 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment