Experiment set8IT090 for Pseudomonas putida KT2440

Compare to:

Adaptation in M9 media timecourse 4; day 3

200 most important genes:

  gene name fitness t score description  
PP_4890 -6.3 -6.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_3511 -6.3 -7.5 Branched-chain-amino-acid aminotransferase compare
PP_1988 -5.8 -8.0 3-isopropylmalate dehydrogenase compare
PP_0967 -5.5 -6.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0966 -5.4 -7.5 Histidinol dehydrogenase compare
PP_1985 -5.4 -5.2 3-isopropylmalate dehydratase large subunit compare
PP_5289 -5.3 -3.7 Acetylglutamate kinase compare
PP_0290 -5.1 -7.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4678 -4.6 -14.5 Ketol-acid reductoisomerase compare
PP_1088 -4.6 -6.3 Argininosuccinate synthase compare
PP_2168 -4.6 -8.8 Transaldolase compare
PP_0422 -4.6 -6.8 Indole-3-glycerol phosphate synthase compare
PP_5185 -4.5 -3.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0292 -4.5 -4.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2433 -4.4 -4.3 conserved protein of unknown function compare
PP_5155 -4.2 -5.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4680 -4.1 -15.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0289 -4.1 -7.8 Imidazoleglycerol-phosphate dehydratase compare
PP_0965 -4.0 -8.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0293 -3.9 -3.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0787 -3.9 -5.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0735 -3.8 -2.6 molybdopterin-synthase adenylyltransferase compare
PP_1995 -3.8 -8.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0184 -3.6 -3.5 Argininosuccinate lyase compare
PP_0417 -3.6 -18.3 Anthranilate synthase component 1 compare
PP_4909 -3.5 -4.2 phosphoserine phosphatase compare
PP_3376 -3.5 -8.1 putative phosphonate dehydrogenase compare
PP_2348 -3.4 -5.8 Sensor histidine kinase compare
PP_1079 -3.2 -6.3 Ornithine carbamoyltransferase compare
PP_5014 -3.2 -2.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_0421 -3.2 -8.2 Anthranilate phosphoribosyltransferase compare
PP_3790 -3.2 -8.9 diaminopimelate epimerase compare
PP_1231 -3.2 -6.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5104 -3.2 -10.2 thiazole synthase compare
PP_0420 -3.2 -11.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4994 -3.2 -5.2 conserved protein of unknown function compare
PP_0083 -3.2 -3.1 tryptophan synthase beta chain compare
PP_4679 -3.2 -7.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5075 -3.2 -13.4 glutamate synthase (NADPH) beta subunit compare
PP_2371 -3.2 -6.3 Sulphite reductase hemoprotein, beta subunit compare
PP_1986 -3.1 -4.7 3-isopropylmalate dehydratase small subunit compare
PP_2370 -3.1 -3.4 conserved protein of unknown function compare
PP_4058 -3.0 -7.8 1,4-alpha-glucan branching enzyme compare
PP_5128 -3.0 -7.0 Dihydroxy-acid dehydratase compare
PP_0082 -2.9 -2.8 tryptophan synthase alpha chain compare
PP_1233 -2.8 -6.0 sulfurtransferase compare
PP_1898 -2.8 -2.7 MotA/TolQ/ExbB proton channel family protein compare
PP_5015 -2.7 -3.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1366 -2.6 -2.5 Transcriptional regulator MvaT, P16 subunit compare
PP_3999 -2.6 -5.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0339 -2.6 -1.8 Pyruvate dehydrogenase E1 component compare
PP_0691 -2.6 -1.8 Glutamate 5-kinase compare
PP_5076 -2.6 -16.3 L-glutamate synthase(NADPH) alpha subunit compare
PP_4723 -2.5 -1.7 Carbamoyl-phosphate synthase large chain compare
PP_2388 -2.4 -4.3 Transporter, LysE family compare
PP_4724 -2.4 -1.6 Carbamoyl-phosphate synthase small chain compare
PP_1664 -2.4 -2.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_1025 -2.2 -8.3 2-isopropylmalate synthase compare
PP_4782 -2.1 -4.4 Phosphomethylpyrimidine kinase compare
PP_5346 -2.1 -8.8 pyruvate carboxylase subunit B compare
PP_1109 -2.0 -14.0 Transcriptional regulator, GntR family compare
PP_4836 -2.0 -3.7 conserved exported protein of unknown function compare
PP_5098 -2.0 -8.1 methionine biosynthesis protein MetW compare
PP_4263 -2.0 -3.2 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_5347 -2.0 -10.9 pyruvate carboxylase subunit A compare
PP_4008 -2.0 -3.5 ATP-dependent serine protease compare
PP_4696 -1.9 -1.9 Nitrogen regulation protein NR(I) compare
PP_5348 -1.9 -8.2 Transcriptional regulator, LysR family compare
PP_0834 -1.9 -1.7 Sec translocation complex subunit YajC compare
PP_4922 -1.9 -10.7 Phosphomethylpyrimidine synthase compare
PP_4342 -1.9 -2.2 flagellar synthesis regulator, putative ATPase compare
PP_0291 -1.9 -3.0 conserved protein of unknown function compare
PP_2390 -1.9 -8.6 Transcriptional regulator, LysR family compare
PP_4480 -1.9 -8.8 arginine N-succinyltransferase, subunit alpha compare
PP_1111 -1.8 -7.9 putative Synthetase compare
PP_1589 -1.8 -7.2 uridylyltransferase compare
PP_4684 -1.8 -6.4 conserved protein of unknown function with kinase-like domain compare
PP_1110 -1.8 -5.5 serine acetyltransferase compare
PP_2001 -1.8 -9.1 O-succinylhomoserine sulfhydrylase compare
PP_2402 -1.7 -1.2 putative Sensor histidine kinase compare
PP_2328 -1.7 -4.8 Phosphoadenosine phosphosulfate reductase compare
PP_5097 -1.7 -10.6 homoserine O-acetyltransferase compare
PP_1348 -1.6 -7.0 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4262 -1.5 -2.2 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5350 -1.5 -2.0 Transcriptional regulator, RpiR family compare
PP_5329 -1.5 -4.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4060 -1.5 -9.4 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_5303 -1.5 -4.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_3102 -1.4 -3.7 conserved protein of unknown function compare
PP_1428 -1.4 -0.9 Sigma factor AlgU negative regulatory protein compare
PP_5328 -1.4 -4.1 putative phosphate transport system permease protein compare
PP_2327 -1.4 -5.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0362 -1.4 -9.5 Biotin synthase compare
PP_4505 -1.3 -4.3 Sensor histidine kinase compare
PP_0261 -1.3 -5.3 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_2378 -1.3 -1.9 Fe/S biogenesis protein NfuA compare
PP_5095 -1.3 -1.6 pyrroline-5-carboxylate reductase compare
PP_1362 -1.3 -2.0 pyruvate kinase II compare
PP_5216 -1.2 -2.1 exopolyphosphatase compare
PP_1318 -1.2 -4.2 Cytochrome b compare
PP_5041 -1.2 -7.4 glycogen phosphorylase compare
PP_4004 -1.2 -1.4 DNA translocase FtsK compare
PP_4009 -1.2 -4.4 ATP-dependent Clp protease adapter protein ClpS compare
PP_1426 -1.2 -7.1 L-aspartate oxidase compare
PP_1328 -1.1 -2.3 Protein MraZ compare
PP_4532 -1.1 -1.6 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_5507 -1.1 -2.3 protein of unknown function compare
PP_2511 -1.1 -3.1 conserved protein of unknown function compare
PP_4528 -1.1 -2.7 conserved protein of unknown function compare
PP_1011 -1.1 -6.6 glucokinase compare
PP_2217 -1.1 -3.2 enoyl-CoA hydratase compare
PP_4285 -1.1 -3.3 5-hydroxyisourate hydrolase compare
PP_3880 -1.1 -1.3 conserved exported protein of unknown function compare
PP_1912 -1.1 -3.6 Phosphate acyltransferase compare
PP_0513 -1.1 -1.5 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_2928 -1.1 -4.9 Saccharopine dehydrogenase compare
PP_1022 -1.1 -2.8 glucose 6-phosphate-1-dehydrogenase compare
PP_0957 -1.0 -2.1 D-arabinose 5-phosphate isomerase compare
PP_5051 -1.0 -1.9 conserved protein of unknown function compare
PP_2714 -1.0 -3.4 Sensor histidine kinase compare
PP_5327 -1.0 -3.7 putative phosphate ABC transporter, permease subunit compare
PP_1528 -1.0 -1.5 conserved protein of unknown function compare
PP_4997 -1.0 -1.9 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_3409 -1.0 -2.3 putative Cobalamin biosynthesis protein cobE compare
PP_1778 -1.0 -3.5 Lipopolysaccharide ABC export system, permease protein compare
PP_1198 -1.0 -2.0 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2000 -1.0 -0.9 amidophosphoribosyl transferase compare
PP_4937 -0.9 -1.9 toluene tolerance protein compare
PP_1009 -0.9 -3.4 glyceraldehyde-3-phosphate dehydrogenase compare
PP_4793 -0.9 -2.7 conserved protein of unknown function compare
PP_5090 -0.9 -0.9 putative cell division protein compare
PP_1099 -0.9 -1.7 Cold shock protein CapB compare
PP_3904 -0.9 -3.4 conserved protein of unknown function compare
PP_5621 -0.9 -1.1 protein of unknown function compare
PP_4726 -0.9 -1.6 Chaperone protein DnaJ compare
PP_0022 -0.9 -0.8 hypothetical protein compare
PP_4199 -0.9 -1.0 putative Lipoprotein compare
PP_2820 -0.8 -2.0 HTH-type transcriptional regulator nfxB compare
PP_1553 -0.8 -1.6 conserved protein of unknown function compare
PP_3614 -0.8 -2.0 conserved membrane protein of unknown function compare
PP_1015 -0.8 -4.8 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_3788 -0.8 -5.0 putative Non-ribosomal peptide synthetase compare
PP_4251 -0.8 -2.0 cytochrome c oxidase subunit, cbb3-type compare
PP_0995 -0.8 -3.5 conserved membrane protein of unknown function compare
PP_3505 -0.8 -1.9 conserved protein of unknown function compare
PP_5121 -0.8 -2.3 conserved exported protein of unknown function compare
PP_5202 -0.8 -0.7 putative cell division protein compare
PP_4055 -0.8 -6.0 Glycogen debranching enzyme compare
PP_4695 -0.8 -4.9 Sensory box histidine kinase compare
PP_4879 -0.8 -2.1 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_1355 -0.8 -7.1 Muropeptide permease AmpG compare
PP_4261 -0.8 -2.3 cation-transporting P-type ATPase compare
PP_0260 -0.8 -3.7 ADP-sugar pyrophosphorylase compare
PP_3541 -0.8 -1.8 Transporter, MgtC family compare
PP_4778 -0.8 -2.3 23S rRNA pseudouridine 2457 synthase compare
PP_5035 -0.8 -3.1 Histidine utilization repressor compare
PP_1719 -0.8 -3.8 Tail-specific protease prc compare
PP_3649 -0.8 -1.9 Transcriptional regulator, GntR family compare
PP_0122 -0.8 -1.3 conserved exported protein of unknown function compare
PP_0951 -0.8 -4.0 Ribosome hibernation promoting factor compare
PP_4999 -0.8 -0.5 dihydroorotase-like protein compare
PP_1404 -0.7 -2.4 conserved protein of unknown function compare
PP_5274 -0.7 -1.6 conserved protein of unknown function compare
PP_0848 -0.7 -1.5 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_2153 -0.7 -2.5 conserved protein of unknown function compare
PP_1763 -0.7 -1.5 putative oxidoreductase compare
PP_2302 -0.7 -2.0 DNA-binding, ATP-dependent protease compare
PP_5471 -0.7 -1.6 putative response regulator receiver protein compare
PP_2441 -0.7 -2.2 conserved protein of unknown function compare
PP_4264 -0.7 -3.2 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_1142 -0.7 -0.6 conserved protein of unknown function compare
PP_5162 -0.7 -2.2 conserved exported protein of unknown function compare
PP_1548 -0.7 -2.1 conserved protein of unknown function compare
PP_2429 -0.7 -1.0 putative Membrane protein compare
PP_3328 -0.7 -1.2 putative Ring-cleaving dioxygenase compare
PP_3105 -0.7 -1.3 conserved membrane protein of unknown function compare
PP_0307 -0.7 -1.5 conserved exported protein of unknown function compare
PP_3453 -0.7 -4.5 putative Sensor protein RstB compare
PP_3916 -0.7 -2.2 conserved protein of unknown function compare
PP_3443 -0.7 -4.3 putative glyceraldehyde-3-phosphate dehydrogenase compare
PP_5227 -0.7 -2.9 diaminopimelate decarboxylase compare
PP_4320 -0.7 -2.6 cytochrome c-type biogenesis protein compare
PP_4961 -0.7 -0.7 putative Lipoprotein compare
PP_3787 -0.7 -3.7 conserved protein of unknown function compare
PP_0406 -0.7 -3.3 Nucleotidyltransferase family protein compare
PP_4829 -0.7 -1.7 putative precorrin-3B synthase compare
PP_3926 -0.7 -1.6 short-chain dehydrogenase compare
PP_0832 -0.7 -1.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_2459 -0.7 -1.5 ribose pyranase compare
PP_1611 -0.7 -3.4 2-dehydro-3-deoxyphosphooctonate aldolase compare
PP_0435 -0.7 -5.6 Peptidase, M23/M37 family compare
PP_5048 -0.7 -3.2 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_3179 -0.7 -2.5 Transcriptional regulator, LysR family compare
PP_4993 -0.7 -1.7 Glutathione synthetase compare
PP_4507 -0.7 -3.6 potassium transporter compare
PP_0125 -0.7 -1.5 putative cytochrome c-type protein compare
PP_4471 -0.7 -2.0 Magnesium transporter compare
PP_0905 -0.7 -1.5 conserved exported protein of unknown function compare
PP_1208 -0.7 -0.9 conserved protein of unknown function, SlyX family compare
PP_0306 -0.7 -2.3 conserved protein of unknown function compare


Specific Phenotypes

For 1 genes in this experiment