Experiment set8IT089 for Pseudomonas putida KT2440

Compare to:

Adaptation in M9 media timecourse 4; day 2

200 most important genes:

  gene name fitness t score description  
PP_2433 -6.0 -4.1 conserved protein of unknown function compare
PP_5289 -4.3 -5.9 Acetylglutamate kinase compare
PP_4890 -4.1 -7.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_1088 -4.0 -10.0 Argininosuccinate synthase compare
PP_0290 -3.9 -8.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5155 -3.9 -5.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0966 -3.9 -12.3 Histidinol dehydrogenase compare
PP_0184 -3.7 -4.3 Argininosuccinate lyase compare
PP_0967 -3.6 -11.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0292 -3.5 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0293 -3.3 -3.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1988 -3.2 -9.2 3-isopropylmalate dehydrogenase compare
PP_5014 -3.1 -3.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_4909 -3.1 -5.9 phosphoserine phosphatase compare
PP_1985 -3.1 -5.7 3-isopropylmalate dehydratase large subunit compare
PP_0289 -3.0 -6.9 Imidazoleglycerol-phosphate dehydratase compare
PP_3511 -2.9 -10.8 Branched-chain-amino-acid aminotransferase compare
PP_0965 -2.9 -8.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1986 -2.8 -5.0 3-isopropylmalate dehydratase small subunit compare
PP_4199 -2.7 -1.8 putative Lipoprotein compare
PP_0787 -2.6 -4.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4532 -2.6 -2.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4724 -2.6 -1.8 Carbamoyl-phosphate synthase small chain compare
PP_5185 -2.6 -6.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5015 -2.5 -3.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4680 -2.5 -13.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0691 -2.4 -2.8 Glutamate 5-kinase compare
PP_4678 -2.3 -13.7 Ketol-acid reductoisomerase compare
PP_2168 -2.3 -10.5 Transaldolase compare
PP_4723 -2.3 -3.8 Carbamoyl-phosphate synthase large chain compare
PP_4342 -2.2 -2.1 flagellar synthesis regulator, putative ATPase compare
PP_1231 -2.2 -5.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0339 -2.2 -3.9 Pyruvate dehydrogenase E1 component compare
PP_4696 -2.2 -2.1 Nitrogen regulation protein NR(I) compare
PP_1898 -2.1 -2.8 MotA/TolQ/ExbB proton channel family protein compare
PP_4994 -2.1 -4.4 conserved protein of unknown function compare
PP_0083 -2.0 -4.6 tryptophan synthase beta chain compare
PP_1995 -2.0 -8.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5350 -1.9 -2.5 Transcriptional regulator, RpiR family compare
PP_3999 -1.9 -6.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0082 -1.8 -4.0 tryptophan synthase alpha chain compare
PP_3376 -1.8 -6.7 putative phosphonate dehydrogenase compare
PP_5128 -1.8 -5.7 Dihydroxy-acid dehydratase compare
PP_0291 -1.8 -3.3 conserved protein of unknown function compare
PP_0420 -1.8 -9.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0417 -1.8 -11.8 Anthranilate synthase component 1 compare
PP_0422 -1.8 -5.8 Indole-3-glycerol phosphate synthase compare
PP_t29 -1.7 -1.9 tRNA-Ala compare
PP_4679 -1.7 -5.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3790 -1.7 -8.2 diaminopimelate epimerase compare
PP_1079 -1.6 -5.1 Ornithine carbamoyltransferase compare
PP_4008 -1.6 -3.9 ATP-dependent serine protease compare
PP_4004 -1.6 -1.5 DNA translocase FtsK compare
PP_5582 -1.5 -2.7 conserved protein of unknown function compare
PP_2348 -1.5 -3.4 Sensor histidine kinase compare
PP_1826 -1.5 -2.6 Hydrolase, isochorismatase family compare
PP_1025 -1.5 -7.3 2-isopropylmalate synthase compare
PP_2371 -1.5 -5.0 Sulphite reductase hemoprotein, beta subunit compare
PP_0421 -1.4 -5.3 Anthranilate phosphoribosyltransferase compare
PP_1055 -1.4 -1.5 Type II secretion pathway protein GspN compare
PP_1632 -1.4 -2.5 conserved protein of unknown function compare
PP_5600 -1.4 -2.7 conserved protein of unknown function compare
PP_4396 -1.4 -4.1 conserved protein of unknown function compare
PP_4480 -1.3 -7.3 arginine N-succinyltransferase, subunit alpha compare
PP_5017 -1.3 -0.9 Sec-independent protein translocase protein TatB compare
PP_0735 -1.3 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_4684 -1.3 -5.5 conserved protein of unknown function with kinase-like domain compare
PP_4993 -1.3 -2.8 Glutathione synthetase compare
PP_4268 -1.3 -1.1 nucleoid-associated broad specificity regulator compare
PP_1022 -1.3 -2.9 glucose 6-phosphate-1-dehydrogenase compare
PP_3946 -1.3 -1.0 HTH-type transcriptional repressor NicR compare
PP_4060 -1.3 -8.8 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_1589 -1.3 -5.7 uridylyltransferase compare
PP_2327 -1.2 -4.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0513 -1.2 -1.4 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_5098 -1.2 -5.7 methionine biosynthesis protein MetW compare
PP_2001 -1.2 -6.8 O-succinylhomoserine sulfhydrylase compare
PP_1664 -1.2 -2.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_0880 -1.2 -3.1 dipeptide ABC transporter - putative membrane subunit compare
PP_2000 -1.2 -1.1 amidophosphoribosyl transferase compare
PP_5327 -1.2 -4.4 putative phosphate ABC transporter, permease subunit compare
PP_5347 -1.2 -7.6 pyruvate carboxylase subunit A compare
PP_2370 -1.2 -2.6 conserved protein of unknown function compare
PP_2388 -1.1 -3.9 Transporter, LysE family compare
PP_0995 -1.1 -3.8 conserved membrane protein of unknown function compare
PP_5393 -1.1 -1.1 putative metal-binding chaperone compare
PP_2328 -1.1 -3.6 Phosphoadenosine phosphosulfate reductase compare
PP_1319 -1.1 -3.2 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_5097 -1.1 -6.8 homoserine O-acetyltransferase compare
PP_4505 -1.1 -4.9 Sensor histidine kinase compare
PP_1187 -1.1 -3.5 sensor protein compare
PP_5104 -1.1 -5.2 thiazole synthase compare
PP_5168 -1.0 -2.4 sulfate/thiosulfate import ATP-binding protein compare
PP_0504 -1.0 -3.4 Outer membrane protein OprG compare
PP_2668 -1.0 -2.2 ABC efflux transporter, ATP-binding protein compare
PP_2429 -1.0 -1.4 putative Membrane protein compare
PP_4263 -1.0 -2.3 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_5748 -1.0 -1.9 cytochrome c heme lyase subunit compare
PP_4261 -1.0 -2.3 cation-transporting P-type ATPase compare
PP_5216 -1.0 -1.9 exopolyphosphatase compare
PP_4999 -1.0 -0.6 dihydroorotase-like protein compare
PP_5191 -1.0 -2.5 conserved exported protein of unknown function compare
PP_2031 -1.0 -1.4 conserved protein of unknown function compare
PP_3649 -1.0 -2.5 Transcriptional regulator, GntR family compare
PP_3460 -1.0 -2.3 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_2390 -1.0 -5.2 Transcriptional regulator, LysR family compare
PP_3064 -0.9 -2.3 Phage tail protein compare
PP_5041 -0.9 -6.7 glycogen phosphorylase compare
PP_0630 -0.9 -1.2 DNA gyrase inhibitor YacG compare
PP_3105 -0.9 -1.1 conserved membrane protein of unknown function compare
PP_4253 -0.9 -2.2 cytochrome c oxidase subunit, cbb3-type compare
PP_0848 -0.9 -2.0 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_1763 -0.9 -1.8 putative oxidoreductase compare
PP_5202 -0.9 -1.7 putative cell division protein compare
PP_4262 -0.9 -1.1 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1366 -0.9 -1.0 Transcriptional regulator MvaT, P16 subunit compare
PP_1778 -0.9 -3.4 Lipopolysaccharide ABC export system, permease protein compare
PP_5346 -0.9 -4.8 pyruvate carboxylase subunit B compare
PP_5162 -0.9 -2.7 conserved exported protein of unknown function compare
PP_0825 -0.9 -2.7 phosphonates import ATP-binding protein compare
PP_0377 -0.9 -1.6 coenzyme PQQ synthesis protein D compare
PP_4247 -0.9 -0.7 Exonuclease compare
PP_4642 -0.9 -0.9 Cyclic diguanosine monophosphate-binding protein compare
PP_4581 -0.9 -2.1 putative amidotransferase compare
PP_5329 -0.9 -2.7 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2883 -0.9 -2.1 conserved protein of unknown function compare
PP_4098 -0.9 -1.2 UvrABC system protein C compare
PP_0833 -0.9 -0.8 queuine tRNA-ribosyltransferase compare
PP_1233 -0.8 -2.6 sulfurtransferase compare
PP_4700 -0.8 -2.1 pantothenate synthetase compare
PP_1812 -0.8 -2.1 conserved protein of unknown function compare
PP_4126 -0.8 -0.5 NADH-quinone oxidoreductase subunit I compare
PP_t13 -0.8 -1.6 tRNA-Lys compare
PP_2023 -0.8 -3.0 Glutathione S-transferase family protein compare
PP_1317 -0.8 -2.2 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_5328 -0.8 -2.9 putative phosphate transport system permease protein compare
PP_1829 -0.8 -2.0 Hydrolase, alpha/beta fold family compare
PP_2714 -0.8 -3.6 Sensor histidine kinase compare
PP_1293 -0.8 -1.6 molybdopterin synthase small subunit compare
PP_0307 -0.8 -2.0 conserved exported protein of unknown function compare
PP_1731 -0.8 -2.4 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_5267 -0.8 -0.8 putative cytochrome c5 compare
PP_1318 -0.8 -3.2 Cytochrome b compare
PP_1912 -0.8 -2.7 Phosphate acyltransferase compare
PP_3205 -0.8 -2.7 Fumarylacetoacetate hydrolase family protein compare
PP_2441 -0.8 -2.1 conserved protein of unknown function compare
PP_0094 -0.8 -3.4 5'-nucleotidase compare
PP_0406 -0.7 -2.9 Nucleotidyltransferase family protein compare
PP_2302 -0.7 -2.2 DNA-binding, ATP-dependent protease compare
PP_0984 -0.7 -2.5 conserved membrane protein of unknown function compare
PP_4695 -0.7 -4.5 Sensory box histidine kinase compare
PP_0951 -0.7 -3.2 Ribosome hibernation promoting factor compare
PP_4264 -0.7 -3.3 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_1609 -0.7 -1.3 conserved protein of unknown function compare
PP_0832 -0.7 -1.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_5659 -0.7 -2.1 protein of unknown function compare
PP_4058 -0.7 -4.2 1,4-alpha-glucan branching enzyme compare
PP_4009 -0.7 -2.3 ATP-dependent Clp protease adapter protein ClpS compare
PP_3924 -0.7 -1.9 conserved protein of unknown function compare
PP_1426 -0.7 -4.5 L-aspartate oxidase compare
PP_4260 -0.7 -2.1 conserved protein of unknown function compare
PP_3926 -0.7 -1.6 short-chain dehydrogenase compare
PP_5487 -0.7 -1.9 conserved protein of unknown function compare
PP_1598 -0.7 -1.9 regulatory intramembrane protein RIP zinc protease compare
PP_1364 -0.7 -4.7 conserved exported protein of unknown function compare
PP_3789 -0.7 -3.5 putative Efflux transporter compare
PP_1355 -0.7 -6.3 Muropeptide permease AmpG compare
PP_5502 -0.7 -2.8 ribosome modulation factor compare
PP_1009 -0.7 -2.8 glyceraldehyde-3-phosphate dehydrogenase compare
PP_1528 -0.7 -1.1 conserved protein of unknown function compare
PP_4018 -0.7 -1.5 Acetyltransferase, GNAT family compare
PP_0556 -0.7 -2.6 Acetoin catabolism protein compare
PP_1198 -0.7 -1.5 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2497 -0.7 -1.5 conserved protein of unknown function compare
PP_3094 -0.7 -2.5 conserved exported protein of unknown function compare
PP_1699 -0.6 -2.7 2-pyrone-4,6-dicarboxylic acid hydrolase compare
PP_4910 -0.6 -0.9 conserved protein of unknown function compare
PP_3833 -0.6 -2.6 Response regulator compare
PP_5453 -0.6 -1.0 conserved protein of unknown function compare
PP_1479 -0.6 -2.5 HicB protein compare
PP_0874 -0.6 -1.3 conserved protein of unknown function compare
PP_1435 -0.6 -2.5 DNA repair protein RecO compare
PP_5348 -0.6 -3.9 Transcriptional regulator, LysR family compare
PP_0261 -0.6 -2.7 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_5035 -0.6 -3.0 Histidine utilization repressor compare
PP_2646 -0.6 -2.0 conserved protein of unknown function compare
PP_1744 -0.6 -2.7 conserved exported protein of unknown function compare
PP_1873 -0.6 -2.1 Peptide methionine sulfoxide reductase MsrB compare
PP_4482 -0.6 -1.7 Transcriptional regulator, AraC family compare
PP_1348 -0.6 -3.0 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_3776 -0.6 -3.7 putative permease (RarD protein) compare
PP_t11 -0.6 -1.4 tRNA-Lys compare
PP_1186 -0.6 -0.8 two component system DNA-binding transcriptional dual regulator compare
PP_3098 -0.6 -1.2 conserved protein of unknown function compare
PP_2510 -0.6 -1.6 conserved protein of unknown function compare
PP_1054 -0.6 -1.4 Type II secretion pathway protein XcpZ compare
PP_0435 -0.6 -5.0 Peptidase, M23/M37 family compare
PP_1729 -0.6 -1.2 conserved protein of unknown function compare
PP_4793 -0.6 -2.0 conserved protein of unknown function compare
PP_1774 -0.6 -1.1 conserved exported protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in reactor_pregrowth experiments