Experiment set8IT087 for Agrobacterium fabrum C58

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
Atu2684 -3.4 -1.3 hypothetical protein compare
Atu0026 -2.9 -0.9 hypothetical protein compare
Atu3183 -2.7 -0.9 hypothetical protein compare
Atu0434 -2.7 -2.0 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu6098 -2.7 -0.8 transcriptional regulator, HTH family compare
Atu1359 -2.4 -0.9 dnaK deletion suppressor protein compare
Atu1028 -2.2 -1.9 hypothetical protein compare
Atu6165 -2.2 -1.2 hypothetical protein compare
Atu0086 -2.2 -1.0 ribosome-binding factor A compare
Atu1810 -2.1 -1.1 hypothetical protein compare
Atu0051 -2.1 -5.2 two component sensor kinase compare
Atu4469 -2.0 -3.8 iron ABC transporter permease compare
Atu3730 -2.0 -1.6 hypothetical protein compare
Atu4418 -2.0 -3.5 glutaryl-CoA dehydrogenase compare
Atu1844 -2.0 -2.8 Phosphoribosylformylglycinamidine synthetase compare
Atu4773 -1.9 -1.2 two component response regulator compare
Atu8138 -1.9 -1.2 hypothetical protein compare
Atu2439 -1.8 -0.8 hypothetical protein compare
Atu1466 -1.8 -1.3 hypothetical protein compare
Atu2073 -1.7 -3.2 membrane protein compare
Atu0912 -1.7 -1.3 Na+/H+ antiporter compare
Atu4317 -1.7 -1.5 TetR family transcriptional regulator compare
Atu1141 -1.7 -4.0 Phosphoribosylglycinamide synthetase compare
Atu4451 -1.7 -7.4 mannitol 2-dehydrogenase compare
Atu3763 -1.6 -1.5 hypothetical protein compare
Atu0031 -1.6 -0.9 PTS system, IIA component compare
Atu3754 -1.6 -4.0 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu4446 -1.6 -8.8 hypothetical protein compare
Atu1845 -1.6 -2.7 phosphoribosylformylglycinamidine synthase I compare
Atu1110 -1.5 -2.1 cytosol aminopeptidase compare
Atu4505 -1.5 -4.9 LacI family transcriptional regulator compare
Atu3491 -1.5 -2.7 hypothetical protein compare
Atu5045 -1.5 -1.4 hypothetical protein compare
Atu1163 -1.4 -1.2 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu5125 -1.4 -3.4 GntR family transcriptional regulator compare
Atu1850 -1.4 -1.6 phosphoribosylformylglycinamidine synthetase II compare
Atu0399 -1.4 -3.2 dihydroorotase compare
Atu0184 -1.4 -1.8 glucokinase compare
Atu0401 -1.4 -3.2 fructokinase compare
Atu2728 -1.3 -3.3 beta (1-->2) glucan export ATP-binding protein compare
Atu2057 -1.3 -1.8 DNA helicase II compare
Atu3739 -1.3 -1.7 phosphoglycerate kinase compare
Atu2464 -1.3 -2.2 formyltetrahydrofolate deformylase compare
Atu0999 -1.3 -4.3 magnesium transport protein compare
Atu0784 -1.3 -1.4 hypothetical protein compare
Atu0361 -1.3 -2.1 transcriptional regulator compare
Atu2555 -1.3 -2.6 L-lysine 2,3-aminomutase compare
Atu4053 -1.3 -0.7 succinoglycan biosynthesis protein compare
Atu2239 -1.3 -1.8 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0050 -1.2 -3.4 two component response regulator compare
Atu1446 -1.2 -1.5 two component response regulator compare
Atu8082 -1.2 -1.5 hypothetical protein compare
Atu1417 -1.2 -3.8 enoyl-CoA hydratase compare
Atu0647 -1.2 -2.2 phosphoribosylamine--glycine ligase compare
Atu1030 -1.2 -1.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3293 -1.2 -3.6 D-amino acid dehydrogenase small subunit compare
Atu0190 -1.2 -4.7 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0925 -1.2 -1.7 hypothetical protein compare
Atu3757 -1.1 -1.9 hypothetical protein compare
Atu3727 -1.1 -2.7 hypothetical protein compare
Atu6131 -1.1 -3.2 TraR Antiactivator compare
Atu0298 -1.1 -2.2 orotidine 5 compare
Atu4471 -1.1 -4.2 ABC transporter substrate-binding protein compare
Atu0660 -1.1 -3.3 hydrolase compare
Atu8161 -1.1 -0.9 hypothetical protein compare
Atu1075 -1.1 -2.3 amidophosphoribosyltransferase compare
Atu1530 -1.1 -5.2 nitrogen fixation protein FixG compare
Atu1364 -1.1 -3.1 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2052 -1.1 -4.5 hypothetical protein compare
Atu4470 -1.0 -2.8 iron ABC transporter ATPase compare
Atu2146 -1.0 -2.0 hypothetical protein compare
Atu3162 -1.0 -4.0 LacI family transcriptional regulator compare
Atu1620 -1.0 -4.0 triosephosphate isomerase compare
Atu1503 -1.0 -0.7 hypothetical protein compare
Atu1774 -1.0 -3.5 ABC transporter, substrate binding protein (peptide) compare
Atu1439 -1.0 -1.4 hypothetical protein compare
Atu1333 -1.0 -1.9 outer membrane protein compare
Atu0346 -1.0 -1.3 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0993 -1.0 -3.4 transcriptional regulator, TetR family compare
Atu2115 -1.0 -4.0 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu2831 -1.0 -2.5 glucose inhibited division protein A compare
Atu4502 -1.0 -3.4 cobalamin synthesis protein compare
Atu3469 -1.0 -1.0 phosphoglyceromutase compare
Atu1308 -1.0 -2.2 aspartate carbamoyl transferase catalytic subunit compare
Atu1467 -1.0 -2.6 hypothetical protein compare
Atu1449 -1.0 -3.9 potassium uptake protein compare
Atu1099 -0.9 -2.8 hypothetical protein compare
Atu1760 -0.9 -0.7 hypothetical protein compare
Atu2274 -0.9 -4.2 cation efflux system protein compare
Atu4685 -0.9 -4.2 LacI family transcriptional regulator compare
Atu0062 -0.9 -3.7 transcriptional regulator, ROK family compare
Atu0977 -0.9 -2.7 serine protease DO-like protease compare
Atu0422 -0.9 -0.8 ABC transporter, membrane spanning protein compare
Atu3095 -0.9 -1.7 hypothetical protein compare
Atu2442 -0.9 -1.5 hypothetical protein compare
Atu0986 -0.9 -0.7 hypothetical protein compare
Atu2163 -0.9 -0.6 hypothetical protein compare
Atu1204 -0.9 -2.1 potassium uptake protein compare
Atu4077 -0.9 -5.0 glycogen branching protein compare
Atu1534 -0.9 -2.6 cytochrome-c oxidase, FixP chain compare
Atu1468 -0.9 -2.8 hypothetical protein compare
Atu2532 -0.9 -1.8 transcriptional regulator, MarR family compare
Atu3063 -0.9 -3.5 ABC transporter permease compare
Atu0354 -0.9 -1.2 ferric uptake regulator compare
Atu4161 -0.8 -0.7 hypothetical protein compare
Atu1677 -0.8 -1.7 queuine tRNA-ribosyltransferase compare
Atu3913 -0.8 -3.6 biotin carboxylase compare
Atu1874 -0.8 -1.5 RecA protein compare
Atu1173 -0.8 -4.7 MFS permease compare
Atu1529 -0.8 -3.0 nitrogen fixation protein FixH compare
Atu6114 -0.8 -1.0 hypothetical protein compare
Atu8018 -0.8 -0.4 hypothetical protein compare
Atu2238 -0.8 -3.2 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu4217 -0.8 -0.8 TetR family transcriptional regulator compare
Atu3597 -0.8 -3.6 3-hydroxybutyryl-CoA dehydrogenase compare
Atu1863 -0.8 -2.9 permease compare
Atu2738 -0.8 -2.7 nucleoside-diphosphate-sugar epimerase compare
Atu0093 -0.8 -2.4 Recombination protein compare
Atu2063 -0.8 -1.0 hypothetical protein compare
Atu0576 -0.8 -4.5 flagellar hook-associated protein compare
Atu2040 -0.8 -2.2 phosphoserine phosphatase compare
Atu1592 -0.8 -2.1 hypothetical protein compare
Atu2380 -0.8 -1.1 hypothetical protein compare
Atu3075 -0.8 -2.8 TetR family transcriptional regulator compare
Atu1518 -0.8 -2.1 transcriptional regulator, Fur family compare
Atu0189 -0.8 -1.4 ABC transporter, membrane spanning protein (peptide) compare
Atu0236 -0.8 -1.0 hypothetical protein compare
Atu4824 -0.8 -4.8 IclR family transcriptional regulator compare
Atu0368 -0.8 -2.0 tRNA pseudouridine synthase I compare
Atu1902 -0.8 -2.9 transketolase compare
Atu0070 -0.8 -2.7 ribonucleoside-diphosphate reductase 2 alpha chain compare
Atu4407 -0.8 -1.4 periplasmic nitrate reductase, NapD protein compare
Atu1327 -0.8 -1.5 NADH-ubiquinone oxidoreductase compare
Atu5470 -0.8 -1.0 hypothetical protein compare
Atu0071 -0.8 -1.7 ribonucleoside-diphosphate reductase 2 beta chain compare
Atu2396 -0.8 -2.2 urease accessory protein compare
Atu1307 -0.8 -1.7 dihydroorotase compare
Atu6036 -0.8 -0.5 entry-exclusion protein compare
Atu5186 -0.8 -1.0 hypothetical protein compare
Atu1300 -0.8 -3.5 MFS permease compare
Atu0780 -0.7 -2.5 hypothetical protein compare
Atu1066 -0.7 -2.0 hypothetical protein compare
Atu0971 -0.7 -1.7 two component sensor kinase compare
Atu5106 -0.7 -1.6 DNA binding protein compare
Atu2489 -0.7 -3.8 hypothetical protein compare
Atu0578 -0.7 -2.2 FlbT post-transcriptional regulator of flagellin compare
Atu0043 -0.7 -1.1 imidazoleglycerol-phosphate dehydratase compare
Atu8159 -0.7 -1.1 hypothetical protein compare
Atu1708 -0.7 -3.4 hypothetical protein compare
Atu4779 -0.7 -1.1 hypothetical protein compare
Atu5517 -0.7 -1.1 hypothetical protein compare
Atu0141 -0.7 -0.7 cytochrome O ubiquinol oxidase subunit I compare
Atu0690 -0.7 -1.0 hypothetical protein compare
Atu8099 -0.7 -1.4 hypothetical protein compare
Atu4419 -0.7 -2.7 LysR family transcriptional regulator compare
Atu3144 -0.7 -2.3 GntR family transcriptional regulator compare
Atu1859 -0.7 -1.9 glutaminase A compare
Atu1527 -0.7 -1.6 nitrogen fixation protein FixS compare
Atu1500 -0.7 -1.6 rare lipoprotein A compare
Atu0885 -0.7 -1.0 hypothetical protein compare
Atu3515 -0.7 -1.3 hypothetical protein compare
Atu5485 -0.7 -1.1 hypothetical protein compare
Atu1517 -0.7 -2.5 hypothetical protein compare
Atu0135 -0.7 -1.0 uracil phosphoribosyltransferase compare
Atu1629 -0.7 -0.6 transcriptional regulator, ArsR family compare
Atu1098 -0.7 -0.9 hypothetical protein compare
Atu8190 -0.7 -2.0 hypothetical protein compare
Atu1838 -0.7 -1.8 ABC transporter, substrate binding protein (amino acid) compare
Atu1039 -0.7 -1.8 DNA repair protein RecO compare
Atu1129 -0.7 -3.0 excinuclease ABC chain C compare
Atu4153 -0.7 -3.2 aldehyde dehydrogenase compare
Atu0565 -0.7 -2.1 hypothetical protein compare
Atu2648 -0.7 -1.9 hypothetical protein compare
Atu2630 -0.7 -2.1 hypothetical protein compare
Atu2205 -0.7 -2.6 transcriptional regulator, MarR family compare
Atu2832 -0.7 -1.6 tRNA modification GTPase compare
Atu2554 -0.7 -0.8 lysyl-tRNA synthetase compare
Atu5148 -0.7 -2.0 hypothetical protein compare
Atu0862 -0.7 -1.9 hypothetical protein compare
Atu2733 -0.6 -1.5 hypothetical protein compare
Atu1232 -0.6 -0.9 hypothetical protein compare
Atu3609 -0.6 -1.7 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu3360 -0.6 -3.0 amino acid ABC transporter ATPase/permease compare
Atu3480 -0.6 -2.7 hydroxymethylglutaryl-CoA lyase compare
Atu3519 -0.6 -2.8 peptidyl-prolyl cis-trans isomerase compare
Atu3911 -0.6 -0.9 hypothetical protein compare
Atu0846 -0.6 -1.5 transcriptional regulator, MarR family compare
Atu0269 -0.6 -1.8 exodeoxyribonuclease VII large subunit compare
Atu1457 -0.6 -1.1 hypothetical protein compare
Atu1338 -0.6 -1.6 3-oxoacyl-(acyl carrier protein) reductase compare
Atu2137 -0.6 -2.0 hypothetical protein compare
Atu3429 -0.6 -0.6 hypothetical protein compare
Atu1782 -0.6 -1.3 hypothetical protein compare
Atu0468 -0.6 -2.8 hypothetical protein compare
Atu0197 -0.6 -2.4 ABC transporter, nucleotide binding/ATPase protein (proline/glycine/betaine) compare
Atu2537 -0.6 -1.3 transcriptional regulator, TetR family compare
Atu3486 -0.6 -0.8 DeoR family transcriptional regulator compare
Atu1537 -0.6 -2.4 cytochrome-c oxidase, FixN chain compare
Atu1213 -0.6 -1.3 hypothetical protein compare
Atu2124 -0.6 -2.7 transcriptional regulator, ArsR family compare


Specific Phenotypes

For 4 genes in this experiment