Experiment set8IT085 for Pseudomonas putida KT2440

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40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.

200 most important genes:

  gene name fitness t score description  
PP_4890 -5.1 -3.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_1109 -5.0 -12.6 Transcriptional regulator, GntR family compare
PP_4678 -4.5 -3.1 Ketol-acid reductoisomerase compare
PP_3511 -4.2 -5.8 Branched-chain-amino-acid aminotransferase compare
PP_4217 -4.1 -17.5 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_1988 -4.1 -4.0 3-isopropylmalate dehydrogenase compare
PP_2433 -4.1 -2.8 conserved protein of unknown function compare
PP_0966 -4.0 -2.8 Histidinol dehydrogenase compare
PP_1111 -4.0 -2.8 putative Synthetase compare
PP_0422 -4.0 -3.9 Indole-3-glycerol phosphate synthase compare
PP_0290 -4.0 -4.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1110 -3.9 -3.0 serine acetyltransferase compare
PP_0967 -3.9 -4.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4680 -3.9 -7.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2348 -3.7 -5.0 Sensor histidine kinase compare
PP_0965 -3.6 -6.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0787 -3.6 -4.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0293 -3.6 -2.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5104 -3.6 -4.9 thiazole synthase compare
PP_1985 -3.6 -2.5 3-isopropylmalate dehydratase large subunit compare
PP_5076 -3.5 -12.3 L-glutamate synthase(NADPH) alpha subunit compare
PP_0417 -3.5 -8.9 Anthranilate synthase component 1 compare
PP_5075 -3.4 -6.1 glutamate synthase (NADPH) beta subunit compare
PP_1233 -3.3 -2.3 sulfurtransferase compare
PP_0261 -3.3 -4.5 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_0735 -3.2 -2.2 molybdopterin-synthase adenylyltransferase compare
PP_2168 -3.2 -4.3 Transaldolase compare
PP_1995 -3.1 -2.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1079 -3.1 -3.7 Ornithine carbamoyltransferase compare
PP_0421 -3.1 -5.1 Anthranilate phosphoribosyltransferase compare
PP_4922 -3.0 -9.0 Phosphomethylpyrimidine synthase compare
PP_1986 -3.0 -2.1 3-isopropylmalate dehydratase small subunit compare
PP_0420 -3.0 -9.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1088 -3.0 -2.9 Argininosuccinate synthase compare
PP_5289 -2.9 -2.9 Acetylglutamate kinase compare
PP_2903 -2.9 -2.0 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4679 -2.9 -2.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5128 -2.8 -8.3 Dihydroxy-acid dehydratase compare
PP_1231 -2.8 -2.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5098 -2.8 -3.9 methionine biosynthesis protein MetW compare
PP_5155 -2.8 -3.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0289 -2.6 -4.7 Imidazoleglycerol-phosphate dehydratase compare
PP_3971 -2.6 -1.8 conserved protein of unknown function compare
PP_5015 -2.6 -1.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5185 -2.5 -1.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1623 -2.5 -5.2 RNA polymerase, sigma S (sigma 38) factor compare
PP_4994 -2.5 -1.7 conserved protein of unknown function compare
PP_0276 -2.4 -1.8 Transcriptional regulator, Cro/CI family compare
PP_4782 -2.4 -2.8 Phosphomethylpyrimidine kinase compare
PP_2388 -2.4 -4.2 Transporter, LysE family compare
PP_2327 -2.4 -3.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4208 -2.3 -5.7 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_4505 -2.3 -4.5 Sensor histidine kinase compare
PP_5097 -2.3 -9.1 homoserine O-acetyltransferase compare
PP_2001 -2.3 -7.7 O-succinylhomoserine sulfhydrylase compare
PP_0292 -2.2 -3.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0127 -2.2 -1.5 Thiol:disulfide interchange protein compare
PP_0291 -2.2 -2.6 conserved protein of unknown function compare
PP_0184 -2.1 -1.5 Argininosuccinate lyase compare
PP_5347 -2.1 -8.7 pyruvate carboxylase subunit A compare
PP_0910 -2.1 -3.5 conserved exported protein of unknown function compare
PP_0362 -2.1 -8.2 Biotin synthase compare
PP_4009 -2.0 -3.9 ATP-dependent Clp protease adapter protein ClpS compare
PP_0913 -2.0 -3.6 conserved exported protein of unknown function compare
PP_5346 -2.0 -7.4 pyruvate carboxylase subunit B compare
PP_1898 -2.0 -1.4 MotA/TolQ/ExbB proton channel family protein compare
PP_1082 -2.0 -3.8 bacterioferritin compare
PP_1083 -2.0 -3.9 (2Fe-2S)-binding protein compare
PP_2371 -2.0 -3.7 Sulphite reductase hemoprotein, beta subunit compare
PP_2328 -1.9 -2.9 Phosphoadenosine phosphosulfate reductase compare
PP_2370 -1.8 -1.8 conserved protein of unknown function compare
PP_1779 -1.8 -1.7 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1025 -1.7 -6.1 2-isopropylmalate synthase compare
PP_4060 -1.7 -9.2 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_4504 -1.7 -2.2 conserved exported protein of unknown function compare
PP_1034 -1.7 -5.0 multicopper oxidase compare
PP_4213 -1.6 -1.9 putative dipeptidase compare
PP_3916 -1.6 -2.8 conserved protein of unknown function compare
PP_2390 -1.6 -5.9 Transcriptional regulator, LysR family compare
PP_5095 -1.6 -1.1 pyrroline-5-carboxylate reductase compare
PP_5295 -1.6 -2.1 conserved protein of unknown function compare
PP_5571 -1.6 -1.8 conserved protein of unknown function compare
PP_0048 -1.6 -1.4 conserved protein of unknown function compare
PP_2326 -1.5 -5.9 Universal stress protein compare
PP_0082 -1.5 -1.0 tryptophan synthase alpha chain compare
PP_2714 -1.5 -3.9 Sensor histidine kinase compare
PP_0351 -1.4 -4.2 putative Transmembrane sensor protein compare
PP_0083 -1.4 -1.0 tryptophan synthase beta chain compare
PP_0908 -1.4 -3.6 conserved exported protein of unknown function compare
PP_4058 -1.4 -1.4 1,4-alpha-glucan branching enzyme compare
PP_3508 -1.4 -2.5 Protein CobW compare
PP_3453 -1.4 -6.9 putative Sensor protein RstB compare
PP_3926 -1.4 -1.6 short-chain dehydrogenase compare
PP_4909 -1.4 -1.4 phosphoserine phosphatase compare
PP_0621 -1.4 -3.3 conserved protein of unknown function compare
PP_4329 -1.4 -2.4 FlhB domain protein compare
PP_2341 -1.4 -1.6 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_4199 -1.4 -1.2 putative Lipoprotein compare
PP_5022 -1.4 -1.5 Glutamine transport ATP-binding protein GlnQ compare
PP_0809 -1.3 -3.7 disulfide bond formation protein B compare
PP_5140 -1.3 -2.5 Transcriptional regulator, MerR family compare
PP_0185 -1.3 -4.7 Positive alginate biosynthesis regulatory protein compare
PP_0957 -1.3 -2.1 D-arabinose 5-phosphate isomerase compare
PP_1999 -1.3 -1.5 membrane protein required for colicin V production compare
PP_1778 -1.3 -0.9 Lipopolysaccharide ABC export system, permease protein compare
PP_0260 -1.3 -3.7 ADP-sugar pyrophosphorylase compare
PP_1776 -1.3 -9.0 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_2793 -1.2 -2.5 Acyl-CoA dehydrogenase family protein compare
PP_5348 -1.2 -6.0 Transcriptional regulator, LysR family compare
PP_5583 -1.2 -1.3 conserved protein of unknown function compare
PP_0691 -1.2 -0.8 Glutamate 5-kinase compare
PP_4982 -1.2 -2.9 putative cytochrome b561, iron-regulated compare
PP_3376 -1.2 -3.8 putative phosphonate dehydrogenase compare
PP_4681 -1.2 -2.2 conserved protein of unknown function compare
PP_1802 -1.2 -8.1 glycosyl transferase compare
PP_0893 -1.2 -2.5 ThiJ/PfpI family protein compare
PP_2152 -1.2 -2.0 glycerophosphoryl diester phosphodiesterase compare
PP_3505 -1.2 -1.9 conserved protein of unknown function compare
PP_4555 -1.2 -2.5 conserved protein of unknown function compare
PP_4684 -1.2 -3.4 conserved protein of unknown function with kinase-like domain compare
PP_2345 -1.2 -2.4 conserved exported protein of unknown function compare
PP_1716 -1.2 -1.4 Transcriptional regulator, Cro/CI family compare
PP_1663 -1.2 -4.9 conserved exported protein of unknown function compare
PP_3365 -1.1 -1.2 Acetolactate synthase compare
PP_5168 -1.1 -2.2 sulfate/thiosulfate import ATP-binding protein compare
PP_4662 -1.1 -2.4 conserved protein of unknown function compare
PP_1410 -1.1 -1.5 conserved protein of unknown function compare
PP_4352 -1.1 -5.0 flagellin export apparatus, substrate specificity protein compare
PP_1770 -1.1 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_1876 -1.1 -2.1 putative ATP/GTP-binding protein of the AAA+ family compare
PP_2142 -1.1 -2.1 Cell division inhibitor SulA compare
PP_0111 -1.1 -2.8 Electron transport protein SCO1/SenC compare
PP_5232 -1.1 -1.9 conserved protein of unknown function compare
PP_3790 -1.0 -4.6 diaminopimelate epimerase compare
PP_1729 -1.0 -1.2 conserved protein of unknown function compare
PP_5303 -1.0 -2.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4829 -1.0 -1.5 putative precorrin-3B synthase compare
PP_4687 -1.0 -2.4 Hemin import ATP-binding protein HmuV compare
PP_2356 -1.0 -4.9 putative Phytochrome family protein compare
PP_4247 -1.0 -0.9 Exonuclease compare
PP_1864 -1.0 -2.1 conserved protein of unknown function compare
PP_5167 -1.0 -1.4 conserved hypothetical protein compare
PP_3312 -1.0 -1.8 putative Heat shock protein compare
PP_4785 -1.0 -2.8 conserved exported protein of unknown function compare
PP_3649 -1.0 -0.7 Transcriptional regulator, GntR family compare
PP_2429 -1.0 -0.9 putative Membrane protein compare
PP_5110 -1.0 -1.5 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_0507 -1.0 -3.5 putative ABC efflux transporter, ATP-binding protein compare
PP_5652 -1.0 -1.3 conserved protein of unknown function, phage origin compare
PP_5502 -1.0 -2.8 ribosome modulation factor compare
PP_1553 -0.9 -1.5 conserved protein of unknown function compare
PP_1055 -0.9 -0.5 Type II secretion pathway protein GspN compare
PP_1008 -0.9 -1.7 RNA polymerase subunit sigma-24 compare
PP_0153 -0.9 -1.5 hypothetical protein compare
PP_4424 -0.9 -1.8 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_3803 -0.9 -3.4 putative Cation ABC transporter, permease protein compare
PP_2530 -0.9 -1.7 conserved protein of unknown function compare
PP_3487 -0.9 -2.2 conserved exported protein of unknown function compare
PP_3821 -0.9 -3.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0306 -0.9 -2.0 conserved protein of unknown function compare
PP_3539 -0.9 -1.1 putative Transcriptional regulator compare
PP_1020 -0.9 -1.7 putative glucose-6-phosphate 1-epimerase compare
PP_4150 -0.9 -2.8 microcin C transporter - ATP binding subunit compare
PP_5SB -0.9 -2.3 5S ribosomal RNA compare
PP_4966 -0.9 -1.7 transcriptional regulator of methionine metabolism compare
PP_3999 -0.9 -1.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2794 -0.9 -1.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_4739 -0.9 -1.6 conserved protein of unknown function compare
PP_5311 -0.9 -3.7 putative signal transduction protein compare
PP_5422 -0.9 -2.5 hypothetical protein compare
PP_0040 -0.9 -1.7 hypothetical protein compare
PP_5008 -0.9 -1.4 Poly granule-associated protein compare
PP_2740 -0.9 -1.5 Transcriptional regulator, MerR family compare
PP_5475 -0.9 -1.2 conserved protein of unknown function compare
PP_5143 -0.9 -2.0 conserved membrane protein of unknown function compare
PP_2747 -0.9 -1.5 conserved protein of unknown function compare
PP_0695 -0.9 -2.7 conserved protein of unknown function compare
PP_0482 -0.9 -3.6 bacterioferritin compare
PP_4385 -0.9 -2.2 flagellar basal-body rod protein FlgG compare
PP_5483 -0.9 -1.4 conserved protein of unknown function compare
PP_3530 -0.8 -2.9 putative S-ureidoglycine aminohydrolase compare
PP_1348 -0.8 -3.0 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4897 -0.8 -2.5 N-acetylmuramoyl-L-alanine amidase compare
PP_1328 -0.8 -1.3 Protein MraZ compare
PP_4792 -0.8 -1.5 conserved exported protein of unknown function compare
PP_0126 -0.8 -1.5 Cytochrome c4 compare
PP_4882 -0.8 -4.4 Iron ABC transporter, permease protein compare
PP_2820 -0.8 -1.4 HTH-type transcriptional regulator nfxB compare
PP_1258 -0.8 -3.5 4-hydroxyproline epimerase compare
PP_4480 -0.8 -3.5 arginine N-succinyltransferase, subunit alpha compare
PP_2020 -0.8 -3.6 putative Lipoprotein compare
PP_0508 -0.8 -1.7 conserved exported protein of unknown function compare
PP_3064 -0.8 -1.5 Phage tail protein compare
PP_3833 -0.8 -1.9 Response regulator compare
PP_5202 -0.8 -1.0 putative cell division protein compare
PP_0080 -0.8 -2.7 conserved protein of unknown function compare
PP_0022 -0.8 -0.7 hypothetical protein compare
PP_1038 -0.8 -1.4 conserved protein of unknown function compare
PP_1460 -0.8 -4.0 putative Membrane protein compare
PP_2931 -0.8 -2.0 conserved protein of unknown function compare


Specific Phenotypes

For 4 genes in this experiment