Experiment set8IT084 for Pseudomonas putida KT2440

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40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.

200 most important genes:

  gene name fitness t score description  
PP_4890 -5.5 -3.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_1110 -5.2 -5.1 serine acetyltransferase compare
PP_1109 -4.9 -13.9 Transcriptional regulator, GntR family compare
PP_0290 -4.7 -3.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2348 -4.7 -4.5 Sensor histidine kinase compare
PP_4678 -4.6 -5.5 Ketol-acid reductoisomerase compare
PP_3511 -4.5 -6.2 Branched-chain-amino-acid aminotransferase compare
PP_1988 -4.5 -4.4 3-isopropylmalate dehydrogenase compare
PP_2433 -4.5 -3.1 conserved protein of unknown function compare
PP_1111 -4.4 -3.0 putative Synthetase compare
PP_0787 -4.3 -4.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0966 -4.3 -4.1 Histidinol dehydrogenase compare
PP_5104 -4.2 -5.0 thiazole synthase compare
PP_4680 -4.2 -8.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1328 -4.2 -2.8 Protein MraZ compare
PP_0967 -4.0 -4.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0965 -4.0 -6.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0293 -4.0 -2.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1985 -4.0 -2.7 3-isopropylmalate dehydratase large subunit compare
PP_2168 -3.9 -2.7 Transaldolase compare
PP_0417 -3.9 -8.7 Anthranilate synthase component 1 compare
PP_0422 -3.8 -4.5 Indole-3-glycerol phosphate synthase compare
PP_0420 -3.8 -9.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4217 -3.8 -19.0 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_0292 -3.8 -2.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1079 -3.8 -3.7 Ornithine carbamoyltransferase compare
PP_4922 -3.7 -9.9 Phosphomethylpyrimidine synthase compare
PP_0261 -3.7 -4.4 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_5076 -3.6 -14.2 L-glutamate synthase(NADPH) alpha subunit compare
PP_5289 -3.6 -2.5 Acetylglutamate kinase compare
PP_5075 -3.6 -8.3 glutamate synthase (NADPH) beta subunit compare
PP_4679 -3.4 -2.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0735 -3.4 -2.3 molybdopterin-synthase adenylyltransferase compare
PP_1233 -3.4 -3.3 sulfurtransferase compare
PP_1088 -3.4 -2.4 Argininosuccinate synthase compare
PP_1623 -3.2 -6.3 RNA polymerase, sigma S (sigma 38) factor compare
PP_4782 -3.0 -2.1 Phosphomethylpyrimidine kinase compare
PP_1995 -3.0 -4.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0362 -3.0 -11.9 Biotin synthase compare
PP_5015 -3.0 -2.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5185 -2.9 -2.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0421 -2.8 -7.0 Anthranilate phosphoribosyltransferase compare
PP_4994 -2.8 -1.9 conserved protein of unknown function compare
PP_1986 -2.8 -3.2 3-isopropylmalate dehydratase small subunit compare
PP_0593 -2.7 -1.4 putative ribosome-binding factor compare
PP_1231 -2.6 -4.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5008 -2.6 -2.5 Poly granule-associated protein compare
PP_5097 -2.6 -11.1 homoserine O-acetyltransferase compare
PP_5128 -2.6 -7.2 Dihydroxy-acid dehydratase compare
PP_4208 -2.5 -6.9 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_2327 -2.5 -4.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4271 -2.5 -1.3 conserved protein of unknown function compare
PP_5346 -2.4 -9.0 pyruvate carboxylase subunit B compare
PP_0289 -2.4 -5.9 Imidazoleglycerol-phosphate dehydratase compare
PP_1898 -2.4 -1.6 MotA/TolQ/ExbB proton channel family protein compare
PP_0184 -2.3 -2.3 Argininosuccinate lyase compare
PP_0910 -2.3 -4.1 conserved exported protein of unknown function compare
PP_5347 -2.3 -10.3 pyruvate carboxylase subunit A compare
PP_1779 -2.3 -2.2 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_5098 -2.3 -5.8 methionine biosynthesis protein MetW compare
PP_2001 -2.2 -7.8 O-succinylhomoserine sulfhydrylase compare
PP_2388 -2.1 -4.4 Transporter, LysE family compare
PP_3519 -2.1 -1.0 putative Lipoprotein compare
PP_4909 -2.0 -1.4 phosphoserine phosphatase compare
PP_0913 -1.9 -4.8 conserved exported protein of unknown function compare
PP_4058 -1.9 -1.3 1,4-alpha-glucan branching enzyme compare
PP_4356 -1.8 -3.0 Flagellar protein FliO compare
PP_0082 -1.8 -1.3 tryptophan synthase alpha chain compare
PP_1034 -1.8 -5.5 multicopper oxidase compare
PP_3916 -1.8 -3.3 conserved protein of unknown function compare
PP_0083 -1.8 -1.2 tryptophan synthase beta chain compare
PP_1348 -1.8 -5.3 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_3505 -1.7 -2.8 conserved protein of unknown function compare
PP_5155 -1.7 -2.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5303 -1.7 -3.4 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2371 -1.7 -4.2 Sulphite reductase hemoprotein, beta subunit compare
PP_0291 -1.7 -2.2 conserved protein of unknown function compare
PP_0111 -1.7 -3.8 Electron transport protein SCO1/SenC compare
PP_3376 -1.6 -4.2 putative phosphonate dehydrogenase compare
PP_4897 -1.6 -4.8 N-acetylmuramoyl-L-alanine amidase compare
PP_4060 -1.6 -9.3 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_2631 -1.6 -1.6 putative cellulose biosynthesis, BcsF/YhjT compare
PP_4505 -1.6 -4.6 Sensor histidine kinase compare
PP_3105 -1.5 -2.0 conserved membrane protein of unknown function compare
PP_1776 -1.5 -11.1 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_3580 -1.5 -1.9 conserved protein of unknown function compare
PP_0127 -1.5 -2.5 Thiol:disulfide interchange protein compare
PP_1237 -1.5 -1.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0691 -1.5 -1.0 Glutamate 5-kinase compare
PP_1025 -1.5 -5.6 2-isopropylmalate synthase compare
PP_2137 -1.5 -2.6 beta-ketoadipyl CoA thiolase, beta component compare
PP_2328 -1.5 -3.7 Phosphoadenosine phosphosulfate reductase compare
PP_4981 -1.5 -3.0 polyisoprene-binding protein, acidic stress response factor compare
PP_1082 -1.4 -3.4 bacterioferritin compare
PP_3506 -1.4 -2.9 Magnesium chelatase, subunit ChII compare
PP_2253 -1.4 -2.5 Transcriptional regulator, GntR family compare
PP_2714 -1.4 -3.2 Sensor histidine kinase compare
PP_3453 -1.3 -7.3 putative Sensor protein RstB compare
PP_4785 -1.3 -4.5 conserved exported protein of unknown function compare
PP_2326 -1.3 -5.9 Universal stress protein compare
PP_1778 -1.3 -1.3 Lipopolysaccharide ABC export system, permease protein compare
PP_4836 -1.3 -2.3 conserved exported protein of unknown function compare
PP_1802 -1.3 -9.3 glycosyl transferase compare
PP_0809 -1.3 -4.4 disulfide bond formation protein B compare
PP_5348 -1.3 -5.8 Transcriptional regulator, LysR family compare
PP_5328 -1.3 -3.1 putative phosphate transport system permease protein compare
PP_1548 -1.3 -2.5 conserved protein of unknown function compare
PP_1083 -1.3 -3.7 (2Fe-2S)-binding protein compare
PP_1663 -1.3 -6.1 conserved exported protein of unknown function compare
PP_0250 -1.3 -2.0 heat shock protein Hsp15 involved in ribosome recycling compare
PP_0482 -1.2 -5.3 bacterioferritin compare
PP_3102 -1.2 -2.4 conserved protein of unknown function compare
PP_0351 -1.2 -3.8 putative Transmembrane sensor protein compare
PP_1097 -1.2 -1.1 Methionine--tRNA ligase compare
PP_0909 -1.2 -4.2 conserved exported protein of unknown function compare
PP_0185 -1.2 -5.9 Positive alginate biosynthesis regulatory protein compare
PP_0232 -1.1 -1.3 ATP-binding taurine transporter subunit compare
PP_5110 -1.1 -2.4 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_4684 -1.1 -3.6 conserved protein of unknown function with kinase-like domain compare
PP_1729 -1.1 -1.3 conserved protein of unknown function compare
PP_4247 -1.1 -1.2 Exonuclease compare
PP_4150 -1.1 -3.1 microcin C transporter - ATP binding subunit compare
PP_3530 -1.1 -3.9 putative S-ureidoglycine aminohydrolase compare
PP_4829 -1.1 -1.7 putative precorrin-3B synthase compare
PP_2504 -1.1 -2.2 putative tautomerase K2 compare
PP_4361 -1.0 -3.0 Flagellar hook-length control protein FliK compare
PP_1078 -1.0 -3.7 putative ABC transporter, ATP-binding protein compare
PP_2390 -1.0 -4.1 Transcriptional regulator, LysR family compare
PP_4480 -1.0 -4.5 arginine N-succinyltransferase, subunit alpha compare
PP_4391 -1.0 -4.2 flagellar basal-body rod protein FlgB compare
PP_2322 -1.0 -4.3 Major outer membrane lipoprotein compare
PP_1198 -1.0 -0.7 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0908 -1.0 -3.5 conserved exported protein of unknown function compare
PP_0339 -1.0 -0.7 Pyruvate dehydrogenase E1 component compare
PP_4355 -1.0 -1.4 flagellar export apparatus subunit compare
PP_4070 -1.0 -3.7 conserved protein of unknown function compare
PP_2646 -1.0 -2.1 conserved protein of unknown function compare
PP_0260 -1.0 -2.7 ADP-sugar pyrophosphorylase compare
PP_4390 -1.0 -4.0 flagellar basal-body rod protein FlgC compare
PP_3190 -1.0 -2.5 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_1322 -1.0 -0.5 putative Lipoprotein compare
PP_4982 -1.0 -2.3 putative cytochrome b561, iron-regulated compare
PP_5557 -1.0 -1.7 protein of unknown function compare
PP_0677 -0.9 -2.5 putative Lipoprotein compare
PP_0508 -0.9 -2.2 conserved exported protein of unknown function compare
PP_1020 -0.9 -2.0 putative glucose-6-phosphate 1-epimerase compare
PP_3883 -0.9 -2.1 putative Phage holin compare
PP_1632 -0.9 -1.5 conserved protein of unknown function compare
PP_1349 -0.9 -3.4 ATP:cob(I)alamin adenosyltransferase compare
PP_1609 -0.9 -1.2 conserved protein of unknown function compare
PP_0951 -0.9 -3.0 Ribosome hibernation promoting factor compare
PP_2370 -0.9 -1.4 conserved protein of unknown function compare
PP_2873 -0.9 -2.6 conserved protein of unknown function, UPF0145 family compare
PP_4213 -0.9 -1.5 putative dipeptidase compare
PP_3999 -0.9 -2.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1099 -0.9 -1.5 Cold shock protein CapB compare
PP_1790 -0.9 -2.9 putative Acylneuraminate cytidylyltransferase compare
PP_4424 -0.9 -2.1 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_2820 -0.8 -1.2 HTH-type transcriptional regulator nfxB compare
PP_1553 -0.8 -1.5 conserved protein of unknown function compare
PP_0673 -0.8 -1.8 conserved protein of unknown function compare
PP_5232 -0.8 -0.9 conserved protein of unknown function compare
PP_5345 -0.8 -2.4 Acetyltransferase, GNAT family compare
PP_2615 -0.8 -0.9 hemolysin-coregulated protein compare
PP_5216 -0.8 -1.1 exopolyphosphatase compare
PP_1679 -0.8 -1.9 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4471 -0.8 -1.4 Magnesium transporter compare
PP_3840 -0.8 -1.1 conserved protein of unknown function compare
PP_0841 -0.8 -2.5 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_4352 -0.8 -5.0 flagellin export apparatus, substrate specificity protein compare
PP_3930 -0.8 -1.5 conserved exported protein of unknown function compare
PP_5203 -0.8 -3.6 5-formyltetrahydrofolate cyclo-ligase compare
PP_4353 -0.8 -2.6 Flagellar biosynthetic protein fliR compare
PP_0380 -0.8 -2.6 Coenzyme PQQ synthesis protein A compare
PP_2681 -0.8 -1.0 coenzyme PQQ synthesis protein D compare
PP_1748 -0.8 -2.6 conserved protein of unknown function compare
PP_5000 -0.8 -1.3 peptidase component of the ATP-dependent HslVU protease compare
PP_3790 -0.8 -4.3 diaminopimelate epimerase compare
PP_0089 -0.8 -2.8 stress-induced peroxiredoxin, lipoyl-dependent peroxidase compare
PP_1935 -0.8 -1.3 Transcriptional regulator, Cro/CI family compare
PP_3019 -0.8 -2.5 Carbon-nitrogen hydrolase family protein compare
PP_4444 -0.8 -2.8 transposase compare
PP_3804 -0.8 -3.2 conserved exported protein of unknown function compare
PP_2672 -0.8 -2.9 Transcriptional activator protein ExaE compare
PP_4015 -0.7 -1.9 HflD-like high frequency lysogenization protein compare
PP_1674 -0.7 -2.5 5,6-dimethylbenzimidazole synthase compare
PP_0710 -0.7 -2.5 conserved protein of unknown function compare
PP_0801 -0.7 -1.2 conserved exported protein of unknown function compare
PP_4937 -0.7 -0.9 toluene tolerance protein compare
PP_1460 -0.7 -4.2 putative Membrane protein compare
PP_5488 -0.7 -2.4 conserved protein of unknown function compare
PP_5014 -0.7 -0.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_1355 -0.7 -6.6 Muropeptide permease AmpG compare
PP_5140 -0.7 -1.9 Transcriptional regulator, MerR family compare
PP_5365 -0.7 -4.3 putative fatty acid methyltransferase compare
PP_1646 -0.7 -2.6 putative Thioredoxin compare
PP_4838 -0.7 -4.7 Outer membrane copper receptor OprC compare
PP_5093 -0.7 -0.9 twitching motility protein compare
PP_2768 -0.7 -2.4 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_3799 -0.7 -2.2 conserved exported protein of unknown function compare


Specific Phenotypes

For 6 genes in this experiment