Experiment set8IT084 for Agrobacterium fabrum C58

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
Atu3469 -3.9 -2.4 phosphoglyceromutase compare
Atu3730 -3.4 -1.9 hypothetical protein compare
Atu4317 -3.3 -3.6 TetR family transcriptional regulator compare
Atu2125 -3.0 -1.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu0434 -2.8 -2.2 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0050 -2.6 -7.0 two component response regulator compare
Atu4217 -2.5 -1.9 TetR family transcriptional regulator compare
Atu3763 -2.1 -2.0 hypothetical protein compare
Atu3754 -2.1 -4.7 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1844 -2.1 -2.8 Phosphoribosylformylglycinamidine synthetase compare
Atu2439 -2.1 -1.2 hypothetical protein compare
Atu1810 -1.9 -1.2 hypothetical protein compare
Atu0943 -1.9 -1.9 hypothetical protein compare
Atu3739 -1.9 -2.4 phosphoglycerate kinase compare
Atu3598 -1.8 -1.5 thiol:disulfide interchange protein compare
Atu1021 -1.7 -2.3 outer membrane protein compare
Atu1850 -1.7 -2.4 phosphoribosylformylglycinamidine synthetase II compare
Atu5501 -1.7 -2.4 hypothetical protein compare
Atu4468 -1.6 -5.6 iron transport ABC transporter permease compare
Atu1075 -1.6 -5.1 amidophosphoribosyltransferase compare
Atu0189 -1.6 -2.6 ABC transporter, membrane spanning protein (peptide) compare
Atu1141 -1.6 -4.2 Phosphoribosylglycinamide synthetase compare
Atu1446 -1.6 -1.9 two component response regulator compare
Atu0971 -1.5 -3.7 two component sensor kinase compare
Atu0999 -1.5 -5.3 magnesium transport protein compare
Atu1845 -1.5 -3.4 phosphoribosylformylglycinamidine synthase I compare
Atu0026 -1.5 -0.8 hypothetical protein compare
Atu4677 -1.5 -1.4 hypothetical protein compare
Atu2728 -1.5 -4.2 beta (1-->2) glucan export ATP-binding protein compare
Atu4451 -1.5 -6.3 mannitol 2-dehydrogenase compare
Atu5540 -1.5 -0.8 hypothetical protein compare
Atu0051 -1.5 -4.3 two component sensor kinase compare
Atu1028 -1.4 -1.3 hypothetical protein compare
Atu4446 -1.4 -7.3 hypothetical protein compare
Atu5125 -1.4 -5.0 GntR family transcriptional regulator compare
Atu1140 -1.4 -3.6 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu4469 -1.4 -2.7 iron ABC transporter permease compare
Atu1359 -1.4 -0.8 dnaK deletion suppressor protein compare
Atu1163 -1.4 -1.3 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu4711 -1.3 -4.6 two component sensor kinase compare
Atu2052 -1.3 -5.2 hypothetical protein compare
Atu0912 -1.3 -1.3 Na+/H+ antiporter compare
Atu0346 -1.3 -2.6 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0361 -1.3 -2.7 transcriptional regulator compare
Atu0784 -1.3 -1.9 hypothetical protein compare
Atu1683 -1.3 -2.1 hypothetical protein compare
Atu3740 -1.3 -2.4 fructose bisphosphate aldolase compare
Atu2831 -1.2 -2.9 glucose inhibited division protein A compare
Atu0184 -1.2 -1.7 glucokinase compare
Atu0188 -1.2 -2.4 ABC transporter, membrane spanning protein (peptide) compare
Atu4418 -1.2 -2.8 glutaryl-CoA dehydrogenase compare
Atu2832 -1.2 -2.9 tRNA modification GTPase compare
Atu0041 -1.2 -1.2 glutamine amidotransferase compare
Atu4471 -1.2 -5.6 ABC transporter substrate-binding protein compare
Atu3727 -1.1 -2.9 hypothetical protein compare
Atu1110 -1.1 -1.7 cytosol aminopeptidase compare
Atu4505 -1.1 -3.5 LacI family transcriptional regulator compare
Atu1620 -1.1 -5.5 triosephosphate isomerase compare
Atu5164 -1.1 -0.7 type IV secretion protein AvhB3 compare
Atu2640 -1.0 -3.9 hypothetical protein compare
Atu1339 -1.0 -2.2 ribonuclease E compare
Atu0723 -1.0 -1.3 FAD dependent oxidoreductase compare
Atu3759 -1.0 -1.1 hypothetical protein compare
Atu8191 -1.0 -1.1 hypothetical protein compare
Atu1467 -1.0 -3.4 hypothetical protein compare
Atu0401 -1.0 -2.6 fructokinase compare
Atu1685 -1.0 -0.7 hypothetical protein compare
Atu0769 -1.0 -1.2 protoheme IX farnesyltransferase compare
Atu5513 -1.0 -1.3 cold shock protein compare
Atu3750 -1.0 -2.0 thiamine-phosphate pyrophosphorylase compare
Atu2193 -1.0 -0.6 hypothetical protein compare
Atu0977 -1.0 -2.3 serine protease DO-like protease compare
Atu1801 -1.0 -1.7 hypothetical protein compare
Atu0976 -1.0 -1.9 cycL protein compare
Atu0422 -1.0 -1.2 ABC transporter, membrane spanning protein compare
Atu2238 -1.0 -4.2 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu4470 -1.0 -2.6 iron ABC transporter ATPase compare
Atu0895 -0.9 -2.0 ABC transporter, substrate binding protein compare
Atu1739 -0.9 -2.9 permease compare
Atu1513 -0.9 -4.4 ABC excinuclease subunit A compare
Atu3479 -0.9 -4.5 3-methylcrotonyl-CoA carboxylase subunit alpha compare
Atu1468 -0.9 -2.5 hypothetical protein compare
Atu2187 -0.9 -2.0 transcriptional regulator, ArsR family compare
Atu0190 -0.9 -3.8 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2207 -0.9 -2.2 two component sensor kinase compare
Atu1619 -0.9 -1.8 protein-export membrane protein SECG compare
Atu1904 -0.9 -1.9 transcriptional regulator compare
Atu1099 -0.9 -3.0 hypothetical protein compare
Atu0071 -0.9 -4.4 ribonucleoside-diphosphate reductase 2 beta chain compare
Atu2768 -0.9 -2.9 hypothetical protein compare
Atu5205 -0.9 -3.6 hypothetical protein compare
Atu8161 -0.9 -0.9 hypothetical protein compare
Atu2274 -0.9 -3.8 cation efflux system protein compare
Atu3337 -0.9 -4.7 LacI family transcriptional regulator compare
Atu0486 -0.9 -2.1 dihydroorotate dehydrogenase compare
Atu1774 -0.9 -3.0 ABC transporter, substrate binding protein (peptide) compare
Atu3912 -0.9 -4.4 hypothetical protein compare
Atu0070 -0.9 -4.3 ribonucleoside-diphosphate reductase 2 alpha chain compare
Atu3162 -0.9 -4.1 LacI family transcriptional regulator compare
Atu1307 -0.9 -1.9 dihydroorotase compare
Atu3345 -0.9 -2.0 6-pyruvoyl tetrahydrobiopterin synthase compare
Atu4685 -0.9 -4.2 LacI family transcriptional regulator compare
Atu4077 -0.9 -4.6 glycogen branching protein compare
Atu3183 -0.8 -0.5 hypothetical protein compare
Atu4108 -0.8 -2.6 ribonuclease D compare
Atu5145 -0.8 -1.9 acetyltransferase compare
Atu0073 -0.8 -3.2 recF-like protein compare
Atu0062 -0.8 -3.5 transcriptional regulator, ROK family compare
Atu5136 -0.8 -4.2 transcriptional repressor of the blcABC operon compare
Atu1535 -0.8 -2.3 cytochrome c oxidase, FixQ chain compare
Atu0152 -0.8 -1.2 hypothetical protein compare
Atu0578 -0.8 -2.5 FlbT post-transcriptional regulator of flagellin compare
Atu0280 -0.8 -1.3 hypothetical protein compare
Atu0399 -0.8 -2.6 dihydroorotase compare
Atu1536 -0.8 -2.5 cytochrome C oxidase, FixO chain compare
Atu5485 -0.8 -1.3 hypothetical protein compare
Atu4825 -0.8 -3.6 dehydrogenase compare
Atu8138 -0.8 -0.7 hypothetical protein compare
Atu6131 -0.8 -1.7 TraR Antiactivator compare
Atu1301 -0.8 -2.7 hypothetical protein compare
Atu1737 -0.8 -1.4 hypothetical protein compare
Atu0368 -0.8 -2.9 tRNA pseudouridine synthase I compare
Atu3240 -0.8 -4.5 ROK family transcriptional regulator compare
Atu0086 -0.8 -0.6 ribosome-binding factor A compare
Atu2442 -0.8 -1.3 hypothetical protein compare
Atu1529 -0.8 -3.1 nitrogen fixation protein FixH compare
Atu1527 -0.8 -1.8 nitrogen fixation protein FixS compare
Atu2827 -0.8 -2.2 hypothetical protein compare
Atu3707 -0.8 -1.4 phosphoserine aminotransferase compare
Atu0883 -0.8 -1.7 hypothetical protein compare
Atu0029 -0.8 -3.4 S-adenosylhomocysteine hydrolase compare
Atu6165 -0.7 -0.8 hypothetical protein compare
Atu0230 -0.7 -0.9 hypothetical protein compare
Atu0464 -0.7 -5.3 hypothetical protein compare
Atu3609 -0.7 -2.5 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu8035 -0.7 -0.8 hypothetical protein compare
Atu1030 -0.7 -0.7 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu5464 -0.7 -4.1 IclR family transcriptional regulator compare
Atu0647 -0.7 -2.5 phosphoribosylamine--glycine ligase compare
Atu1980 -0.7 -1.4 hypothetical protein compare
Atu1602 -0.7 -2.0 transcriptional activator, Crp family compare
Atu2495 -0.7 -2.4 flavoprotein oxidoreductase compare
Atu5475 -0.7 -1.2 hypothetical protein compare
Atu4824 -0.7 -3.7 IclR family transcriptional regulator compare
Atu0566 -0.7 -0.9 hypothetical protein compare
Atu3755 -0.7 -2.1 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu5010 -0.7 -1.5 hypothetical protein compare
Atu2555 -0.7 -1.7 L-lysine 2,3-aminomutase compare
Atu3579 -0.7 -1.6 lactoylglutathione lyase compare
Atu0276 -0.7 -1.4 hypothetical protein compare
Atu2335 -0.7 -1.0 hypothetical protein compare
Atu0947 -0.7 -1.9 transcriptional regulator, AsnC family compare
Atu4205 -0.7 -2.6 TetR family transcriptional regulator compare
Atu0400 -0.7 -1.3 orotate phosphoribosyltransferase compare
Atu1204 -0.7 -2.8 potassium uptake protein compare
Atu2115 -0.7 -2.7 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu4364 -0.7 -3.5 LacI family transcriptional regulator compare
Atu8166 -0.7 -1.9 hypothetical protein compare
Atu4153 -0.7 -3.6 aldehyde dehydrogenase compare
Atu1759 -0.7 -3.3 L-serine dehydratase compare
Atu0153 -0.7 -1.9 transcriptional regulator, Fur family compare
Atu4157 -0.7 -5.3 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase compare
Atu2201 -0.7 -1.5 hydrolase compare
Atu4061 -0.7 -1.5 exopolysaccharide production repressor protein compare
Atu4530 -0.7 -2.4 TetR family transcriptional regulator compare
Atu5161 -0.7 -3.2 hypothetical protein compare
Atu1074 -0.7 -3.8 NAD/NADP dependent oxidoreductase compare
Atu0556 -0.7 -2.0 hypothetical protein compare
Atu1185 -0.7 -1.1 hypothetical protein compare
Atu0973 -0.6 -2.8 cycH protein compare
Atu1447 -0.6 -1.2 two component sensor kinase compare
Atu8118 -0.6 -2.8 putative universal stress protein compare
Atu2237 -0.6 -2.2 cytochrome c1 compare
Atu4148 -0.6 -3.4 UDP-glucuronic acid epimerase compare
Atu0101 -0.6 -1.4 cytochrome c compare
Atu3913 -0.6 -2.5 biotin carboxylase compare
Atu3746 -0.6 -1.9 hypothetical protein compare
Atu3481 -0.6 -1.9 enoyl-CoA hydratase compare
Atu0470 -0.6 -0.9 hypothetical protein compare
Atu4144 -0.6 -0.5 hypothetical protein compare
Atu3295 -0.6 -2.2 hypothetical protein compare
Atu0353 -0.6 -3.2 acetyltransferase compare
Atu0885 -0.6 -1.5 hypothetical protein compare
Atu3518 -0.6 -2.6 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu0762 -0.6 -1.2 hypothetical protein compare
Atu0419 -0.6 -1.0 two component sensor kinase compare
Atu1123 -0.6 -1.7 hypothetical protein compare
Atu4323 -0.6 -2.4 ribitol 2-dehydrogenase compare
Atu0502 -0.6 -2.5 acetyl-CoA acetyltransferase compare
Atu3798 -0.6 -2.2 TetR family transcriptional regulator compare
Atu1232 -0.6 -1.2 hypothetical protein compare
Atu2058 -0.6 -1.3 hypothetical protein compare
Atu0225 -0.6 -0.4 hypothetical protein compare
Atu1444 -0.6 -2.4 nitrogen regulation protein compare
Atu2306 -0.6 -2.7 methionine aminopeptidase compare
Atu0939 -0.6 -1.5 PemI protein compare
Atu3264 -0.6 -1.8 IclR family transcriptional regulator compare
Atu1678 -0.6 -2.4 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu3603 -0.6 -0.9 two component response regulator compare
Atu1023 -0.6 -0.8 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment