Experiment set8IT083 for Agrobacterium fabrum C58

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
Atu0434 -4.2 -2.7 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1446 -4.0 -2.1 two component response regulator compare
Atu1810 -2.9 -1.1 hypothetical protein compare
Atu3469 -2.5 -2.7 phosphoglyceromutase compare
Atu2439 -2.5 -1.4 hypothetical protein compare
Atu1030 -2.5 -1.3 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3730 -2.5 -1.9 hypothetical protein compare
Atu4317 -2.3 -2.3 TetR family transcriptional regulator compare
Atu1850 -2.2 -3.0 phosphoribosylformylglycinamidine synthetase II compare
Atu0298 -2.1 -5.5 orotidine 5 compare
Atu4217 -2.1 -1.7 TetR family transcriptional regulator compare
Atu1844 -2.1 -3.0 Phosphoribosylformylglycinamidine synthetase compare
Atu3740 -2.0 -7.4 fructose bisphosphate aldolase compare
Atu0784 -2.0 -2.3 hypothetical protein compare
Atu0399 -2.0 -5.4 dihydroorotase compare
Atu0842 -2.0 -2.0 hypothetical protein compare
Atu3468 -1.9 -0.7 hypothetical protein compare
Atu2728 -1.8 -4.6 beta (1-->2) glucan export ATP-binding protein compare
Atu0086 -1.8 -1.0 ribosome-binding factor A compare
Atu2193 -1.8 -0.8 hypothetical protein compare
Atu1075 -1.8 -4.6 amidophosphoribosyltransferase compare
Atu0031 -1.8 -1.0 PTS system, IIA component compare
Atu1760 -1.8 -1.2 hypothetical protein compare
Atu0999 -1.8 -6.7 magnesium transport protein compare
Atu8052 -1.7 -0.9 hypothetical protein compare
Atu5430 -1.7 -1.0 hypothetical protein compare
Atu1845 -1.6 -3.4 phosphoribosylformylglycinamidine synthase I compare
Atu3754 -1.6 -4.6 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0190 -1.6 -6.6 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1225 -1.5 -1.4 hypothetical protein compare
Atu4470 -1.5 -5.3 iron ABC transporter ATPase compare
Atu1364 -1.5 -5.1 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1359 -1.4 -0.8 dnaK deletion suppressor protein compare
Atu3727 -1.4 -2.6 hypothetical protein compare
Atu1028 -1.4 -1.6 hypothetical protein compare
Atu2554 -1.4 -1.8 lysyl-tRNA synthetase compare
Atu3739 -1.4 -0.8 phosphoglycerate kinase compare
Atu0386 -1.4 -1.3 hypothetical protein compare
Atu4468 -1.4 -5.3 iron transport ABC transporter permease compare
Atu2163 -1.3 -1.1 hypothetical protein compare
Atu1629 -1.3 -0.9 transcriptional regulator, ArsR family compare
Atu4505 -1.3 -5.7 LacI family transcriptional regulator compare
Atu1619 -1.3 -2.6 protein-export membrane protein SECG compare
Atu4446 -1.3 -4.7 hypothetical protein compare
Atu3733 -1.3 -2.0 hypothetical protein compare
Atu1417 -1.3 -5.3 enoyl-CoA hydratase compare
Atu0051 -1.3 -4.2 two component sensor kinase compare
Atu5164 -1.3 -0.7 type IV secretion protein AvhB3 compare
Atu1468 -1.3 -5.6 hypothetical protein compare
Atu0912 -1.3 -1.1 Na+/H+ antiporter compare
Atu3750 -1.2 -2.2 thiamine-phosphate pyrophosphorylase compare
Atu0188 -1.2 -2.6 ABC transporter, membrane spanning protein (peptide) compare
Atu0647 -1.2 -3.7 phosphoribosylamine--glycine ligase compare
Atu4711 -1.2 -3.9 two component sensor kinase compare
Atu4471 -1.2 -6.4 ABC transporter substrate-binding protein compare
Atu1739 -1.2 -3.2 permease compare
Atu1774 -1.2 -6.0 ABC transporter, substrate binding protein (peptide) compare
Atu1535 -1.2 -1.3 cytochrome c oxidase, FixQ chain compare
Atu0050 -1.1 -3.4 two component response regulator compare
Atu2115 -1.1 -5.7 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu1163 -1.1 -1.0 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu6131 -1.1 -3.5 TraR Antiactivator compare
Atu4502 -1.1 -4.9 cobalamin synthesis protein compare
Atu0189 -1.1 -1.7 ABC transporter, membrane spanning protein (peptide) compare
Atu6098 -1.1 -0.5 transcriptional regulator, HTH family compare
Atu4161 -1.1 -1.0 hypothetical protein compare
Atu2640 -1.1 -2.8 hypothetical protein compare
Atu1307 -1.1 -2.1 dihydroorotase compare
Atu0029 -1.1 -3.1 S-adenosylhomocysteine hydrolase compare
Atu2831 -1.1 -2.4 glucose inhibited division protein A compare
Atu2207 -1.0 -3.4 two component sensor kinase compare
Atu6114 -1.0 -1.5 hypothetical protein compare
Atu4824 -1.0 -4.9 IclR family transcriptional regulator compare
Atu2073 -1.0 -2.9 membrane protein compare
Atu0421 -1.0 -0.7 ABC transporter, membrane spanning protein compare
Atu2442 -1.0 -1.5 hypothetical protein compare
Atu0141 -1.0 -1.0 cytochrome O ubiquinol oxidase subunit I compare
Atu1219 -1.0 -0.4 hypothetical protein compare
Atu1062 -1.0 -1.0 phosphatidylserine synthase compare
Atu0269 -1.0 -2.6 exodeoxyribonuclease VII large subunit compare
Atu0071 -1.0 -4.4 ribonucleoside-diphosphate reductase 2 beta chain compare
Atu1339 -1.0 -1.9 ribonuclease E compare
Atu8151 -1.0 -1.1 hypothetical protein compare
Atu0401 -1.0 -2.2 fructokinase compare
Atu1620 -1.0 -4.3 triosephosphate isomerase compare
Atu0236 -1.0 -1.3 hypothetical protein compare
Atu1074 -0.9 -4.6 NAD/NADP dependent oxidoreductase compare
Atu3712 -0.9 -0.6 hypothetical protein compare
Atu0895 -0.9 -1.7 ABC transporter, substrate binding protein compare
Atu2057 -0.9 -1.6 DNA helicase II compare
Atu1141 -0.9 -1.2 Phosphoribosylglycinamide synthetase compare
Atu1254 -0.9 -1.0 transcriptional regulator, ArsR family compare
Atu0971 -0.9 -2.7 two component sensor kinase compare
Atu4148 -0.9 -4.1 UDP-glucuronic acid epimerase compare
Atu3481 -0.9 -2.6 enoyl-CoA hydratase compare
Atu1449 -0.9 -3.3 potassium uptake protein compare
Atu3763 -0.9 -0.9 hypothetical protein compare
Atu0926 -0.9 -2.4 hypothetical protein compare
Atu4469 -0.9 -1.9 iron ABC transporter permease compare
Atu4077 -0.9 -5.3 glycogen branching protein compare
Atu4530 -0.9 -3.4 TetR family transcriptional regulator compare
Atu4779 -0.9 -2.3 hypothetical protein compare
Atu6036 -0.9 -0.6 entry-exclusion protein compare
Atu3162 -0.9 -4.2 LacI family transcriptional regulator compare
Atu0361 -0.9 -1.1 transcriptional regulator compare
Atu3121 -0.9 -0.7 cold shock protein compare
Atu3913 -0.9 -3.9 biotin carboxylase compare
Atu1513 -0.8 -3.3 ABC excinuclease subunit A compare
Atu4053 -0.8 -0.8 succinoglycan biosynthesis protein compare
Atu1838 -0.8 -2.4 ABC transporter, substrate binding protein (amino acid) compare
Atu1874 -0.8 -1.9 RecA protein compare
Atu4418 -0.8 -2.4 glutaryl-CoA dehydrogenase compare
Atu4686 -0.8 -1.2 hypothetical protein compare
Atu1301 -0.8 -1.8 hypothetical protein compare
Atu1902 -0.8 -3.0 transketolase compare
Atu2578 -0.8 -3.2 cAMP-dependent protein kinase regulatory subunit compare
Atu4451 -0.8 -3.0 mannitol 2-dehydrogenase compare
Atu3757 -0.8 -1.4 hypothetical protein compare
Atu0041 -0.8 -1.1 glutamine amidotransferase compare
Atu1754 -0.8 -1.1 hypothetical protein compare
Atu1336 -0.8 -1.7 hypothetical protein compare
Atu5540 -0.8 -0.5 hypothetical protein compare
Atu4108 -0.8 -4.1 ribonuclease D compare
Atu4671 -0.8 -2.0 response regulator compare
Atu1522 -0.8 -3.2 transcriptional regulator, LacI family compare
Atu2238 -0.8 -3.7 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu2125 -0.8 -0.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu3910 -0.8 -3.6 LamB/YcsF family protein compare
Atu0533 -0.8 -1.6 putative inhibitor of septum formation compare
Atu0070 -0.8 -3.9 ribonucleoside-diphosphate reductase 2 alpha chain compare
Atu0538 -0.8 -1.4 hypothetical protein compare
Atu5125 -0.8 -2.3 GntR family transcriptional regulator compare
Atu0520 -0.8 -1.6 chemotaxis receiver protein compare
Atu1602 -0.8 -2.1 transcriptional activator, Crp family compare
Atu2116 -0.8 -1.8 hypothetical protein compare
Atu1685 -0.8 -0.5 hypothetical protein compare
Atu1444 -0.8 -3.1 nitrogen regulation protein compare
Atu0941 -0.8 -0.5 hypothetical protein compare
Atu2344 -0.8 -1.0 lactoylglutathione lyase compare
Atu1530 -0.7 -3.8 nitrogen fixation protein FixG compare
Atu0751 -0.7 -2.2 ABC transporter, nucleotide binding/ATPase protein (cobalt) compare
Atu4306 -0.7 -1.9 two component response regulator compare
Atu3120 -0.7 -0.6 hypothetical protein compare
Atu0956 -0.7 -1.1 phage prohead protease compare
Atu1511 -0.7 -1.2 hypothetical protein compare
Atu1229 -0.7 -2.1 hypothetical protein compare
Atu3561 -0.7 -1.8 hypothetical protein compare
Atu5467 -0.7 -1.6 hypothetical protein compare
Atu5485 -0.7 -1.1 hypothetical protein compare
Atu0147 -0.7 -1.7 hypothetical protein compare
Atu0922 -0.7 -2.1 hypothetical protein compare
Atu2239 -0.7 -1.6 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0601 -0.7 -3.2 oxidoreductase compare
Atu3337 -0.7 -3.7 LacI family transcriptional regulator compare
Atu3479 -0.7 -3.9 3-methylcrotonyl-CoA carboxylase subunit alpha compare
Atu0272 -0.7 -2.3 transcriptional regulator, MarR family compare
Atu0184 -0.7 -1.1 glucokinase compare
Atu6112 -0.7 -1.7 conserved hypothetical protein compare
Atu0237 -0.7 -2.3 hypothetical protein compare
Atu0346 -0.7 -1.1 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu8056 -0.7 -0.5 hypothetical protein compare
Atu1204 -0.7 -3.3 potassium uptake protein compare
Atu2052 -0.7 -2.7 hypothetical protein compare
Atu3663 -0.7 -0.6 hypothetical protein compare
Atu0578 -0.7 -2.9 FlbT post-transcriptional regulator of flagellin compare
Atu2184 -0.7 -2.6 transcriptional regulator, AsnC family compare
Atu2368 -0.7 -0.5 hypothetical protein compare
Atu5061 -0.7 -2.0 glycerophosphoryl diester phosphodiesterase compare
Atu0354 -0.7 -1.1 ferric uptake regulator compare
Atu5064 -0.7 -2.8 MarR family transcriptional regulator compare
Atu0156 -0.7 -2.9 hypothetical protein compare
Atu2205 -0.7 -1.5 transcriptional regulator, MarR family compare
Atu1802 -0.7 -2.1 lactoylglutathione lyase compare
Atu2489 -0.7 -3.3 hypothetical protein compare
Atu0907 -0.7 -1.7 Phosphinothricin acetyltransferase compare
Atu0093 -0.7 -1.9 Recombination protein compare
Atu4139 -0.7 -1.1 hypothetical protein compare
Atu2832 -0.7 -2.1 tRNA modification GTPase compare
Atu2808 -0.7 -3.2 cobyric acid synthase compare
Atu3572 -0.6 -2.7 transcriptional regulator compare
Atu0319 -0.6 -0.6 ubiquinone biosynthesis protein compare
Atu2682 -0.6 -1.5 hypothetical protein compare
Atu1759 -0.6 -3.0 L-serine dehydratase compare
Atu4205 -0.6 -2.9 TetR family transcriptional regulator compare
Atu0062 -0.6 -2.1 transcriptional regulator, ROK family compare
Atu3835 -0.6 -1.5 hypothetical protein compare
Atu3031 -0.6 -0.8 hypothetical protein compare
Atu1099 -0.6 -2.2 hypothetical protein compare
Atu0786 -0.6 -1.9 peptidase, family M16 compare
Atu0464 -0.6 -2.8 hypothetical protein compare
Atu0947 -0.6 -1.7 transcriptional regulator, AsnC family compare
Atu2472 -0.6 -0.6 hypothetical protein compare
Atu8055 -0.6 -1.5 hypothetical protein compare
Atu4630 -0.6 -1.1 hypothetical protein compare
Atu6189 -0.6 -0.4 protein secretion chaperone compare
Atu0225 -0.6 -0.4 hypothetical protein compare
Atu2746 -0.6 -1.6 hypothetical protein compare
Atu3798 -0.6 -1.9 TetR family transcriptional regulator compare
Atu1019 -0.6 -1.2 hypothetical protein compare
Atu4462 -0.6 -2.5 transcriptional regulator compare


Specific Phenotypes

For 4 genes in this experiment