Experiment set8IT082 for Pseudomonas putida KT2440

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24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.

200 most important genes:

  gene name fitness t score description  
PP_1110 -4.8 -3.3 serine acetyltransferase compare
PP_1109 -4.6 -10.4 Transcriptional regulator, GntR family compare
PP_4890 -4.5 -3.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_3511 -4.0 -3.9 Branched-chain-amino-acid aminotransferase compare
PP_4678 -3.7 -5.0 Ketol-acid reductoisomerase compare
PP_0290 -3.5 -3.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4217 -3.5 -14.6 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_1988 -3.5 -3.4 3-isopropylmalate dehydrogenase compare
PP_0967 -3.4 -2.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0787 -3.4 -3.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2433 -3.4 -2.3 conserved protein of unknown function compare
PP_1111 -3.3 -2.3 putative Synthetase compare
PP_4680 -3.3 -5.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0261 -3.3 -2.3 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_0966 -3.2 -3.8 Histidinol dehydrogenase compare
PP_0422 -3.2 -3.8 Indole-3-glycerol phosphate synthase compare
PP_1079 -3.2 -2.2 Ornithine carbamoyltransferase compare
PP_5076 -3.2 -10.1 L-glutamate synthase(NADPH) alpha subunit compare
PP_0965 -3.1 -5.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0420 -3.1 -6.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0293 -2.9 -2.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1985 -2.9 -2.0 3-isopropylmalate dehydratase large subunit compare
PP_2168 -2.9 -2.0 Transaldolase compare
PP_0735 -2.8 -1.9 molybdopterin-synthase adenylyltransferase compare
PP_0292 -2.8 -1.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5075 -2.8 -6.1 glutamate synthase (NADPH) beta subunit compare
PP_4505 -2.7 -3.2 Sensor histidine kinase compare
PP_3505 -2.7 -2.6 conserved protein of unknown function compare
PP_5289 -2.6 -1.8 Acetylglutamate kinase compare
PP_5143 -2.6 -3.5 conserved membrane protein of unknown function compare
PP_5104 -2.6 -4.9 thiazole synthase compare
PP_5155 -2.6 -2.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4922 -2.6 -7.9 Phosphomethylpyrimidine synthase compare
PP_5128 -2.5 -7.3 Dihydroxy-acid dehydratase compare
PP_0421 -2.5 -3.9 Anthranilate phosphoribosyltransferase compare
PP_4679 -2.5 -1.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5346 -2.4 -6.3 pyruvate carboxylase subunit B compare
PP_0417 -2.4 -8.2 Anthranilate synthase component 1 compare
PP_1986 -2.4 -1.6 3-isopropylmalate dehydratase small subunit compare
PP_4208 -2.3 -4.3 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_1088 -2.3 -2.7 Argininosuccinate synthase compare
PP_1995 -2.2 -2.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1233 -2.2 -2.6 sulfurtransferase compare
PP_0289 -2.2 -3.3 Imidazoleglycerol-phosphate dehydratase compare
PP_4561 -2.2 -1.2 stress response protein compare
PP_3926 -2.2 -1.5 short-chain dehydrogenase compare
PP_2348 -2.1 -4.2 Sensor histidine kinase compare
PP_4782 -2.1 -1.4 Phosphomethylpyrimidine kinase compare
PP_0362 -2.1 -8.6 Biotin synthase compare
PP_5097 -2.1 -7.5 homoserine O-acetyltransferase compare
PP_1623 -2.0 -4.2 RNA polymerase, sigma S (sigma 38) factor compare
PP_1025 -2.0 -8.4 2-isopropylmalate synthase compare
PP_2414 -2.0 -1.9 conserved exported protein of unknown function compare
PP_5185 -2.0 -1.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4952 -1.9 -1.9 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_0978 -1.8 -3.3 conserved protein of unknown function compare
PP_4994 -1.8 -1.3 conserved protein of unknown function compare
PP_2001 -1.8 -5.7 O-succinylhomoserine sulfhydrylase compare
PP_1231 -1.8 -2.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_3164 -1.8 -2.4 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_0351 -1.8 -5.3 putative Transmembrane sensor protein compare
PP_5347 -1.8 -7.1 pyruvate carboxylase subunit A compare
PP_0913 -1.7 -2.6 conserved exported protein of unknown function compare
PP_2725 -1.7 -2.3 Protease PfpI compare
PP_1083 -1.6 -3.8 (2Fe-2S)-binding protein compare
PP_2345 -1.6 -1.6 conserved exported protein of unknown function compare
PP_3376 -1.6 -4.0 putative phosphonate dehydrogenase compare
PP_2646 -1.6 -2.6 conserved protein of unknown function compare
PP_0995 -1.5 -3.1 conserved membrane protein of unknown function compare
PP_0007 -1.5 -1.5 conserved hypothetical protein compare
PP_2326 -1.5 -5.9 Universal stress protein compare
PP_3919 -1.5 -2.3 conserved protein of unknown function compare
PP_0184 -1.5 -1.0 Argininosuccinate lyase compare
PP_5093 -1.5 -1.0 twitching motility protein compare
PP_3519 -1.4 -0.8 putative Lipoprotein compare
PP_2371 -1.4 -2.6 Sulphite reductase hemoprotein, beta subunit compare
PP_1812 -1.4 -1.9 conserved protein of unknown function compare
PP_0607 -1.4 -2.7 putative Type IV pili biogenesis protein FimT compare
PP_1729 -1.4 -1.6 conserved protein of unknown function compare
PP_5015 -1.4 -1.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1898 -1.4 -0.9 MotA/TolQ/ExbB proton channel family protein compare
PP_2908 -1.4 -2.0 DNA-binding transcriptional repressor compare
PP_4355 -1.3 -1.5 flagellar export apparatus subunit compare
PP_3806 -1.3 -2.1 Hydrolase, isochorismatase family compare
PP_3453 -1.3 -5.5 putative Sensor protein RstB compare
PP_1779 -1.3 -1.3 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_3938 -1.3 -1.5 conserved protein of unknown function compare
PP_1410 -1.3 -1.5 conserved protein of unknown function compare
PP_3880 -1.3 -1.3 conserved exported protein of unknown function compare
PP_5295 -1.3 -1.7 conserved protein of unknown function compare
PP_2390 -1.2 -4.6 Transcriptional regulator, LysR family compare
PP_0801 -1.2 -1.5 conserved exported protein of unknown function compare
PP_5098 -1.2 -3.4 methionine biosynthesis protein MetW compare
PP_2327 -1.2 -2.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5348 -1.2 -5.5 Transcriptional regulator, LysR family compare
PP_2370 -1.2 -1.2 conserved protein of unknown function compare
PP_4247 -1.2 -1.1 Exonuclease compare
PP_0909 -1.2 -2.9 conserved exported protein of unknown function compare
PP_5048 -1.2 -3.5 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1513 -1.2 -1.5 Ribosomal RNA small subunit methyltransferase J compare
PP_4150 -1.2 -2.8 microcin C transporter - ATP binding subunit compare
PP_3378 -1.2 -1.6 putative 2-ketogluconokinase compare
PP_3332 -1.2 -2.2 putative cytochrome c-type protein compare
PP_5594 -1.2 -1.9 conserved protein of unknown function compare
PP_4529 -1.1 -2.4 conserved protein of unknown function compare
PP_2511 -1.1 -1.7 conserved protein of unknown function compare
PP_5609 -1.1 -2.2 conserved protein of unknown function compare
PP_5001 -1.1 -1.4 protease HslVU, ATPase component compare
PP_4669 -1.1 -1.3 OmpA family protein compare
PP_2880 -1.1 -1.8 Transcriptional regulator, TetR family compare
PP_1034 -1.1 -3.2 multicopper oxidase compare
PP_2748 -1.1 -1.8 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_3307 -1.1 -0.8 conserved protein of unknown function compare
PP_4060 -1.1 -5.9 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_3292 -1.1 -3.1 conserved membrane protein of unknown function compare
PP_0905 -1.1 -0.9 conserved exported protein of unknown function compare
PP_0770 -1.1 -2.1 PemI-like protein compare
PP_2833 -1.1 -3.2 Transcriptional regulator, LysR family compare
PP_4391 -1.1 -3.2 flagellar basal-body rod protein FlgB compare
PP_2847 -1.0 -1.8 Urease accessory protein UreJ compare
PP_2459 -1.0 -2.1 ribose pyranase compare
PP_2526 -1.0 -2.4 conserved membrane protein of unknown function compare
PP_5502 -1.0 -2.6 ribosome modulation factor compare
PP_1254 -1.0 -3.2 XenA compare
PP_0809 -1.0 -2.6 disulfide bond formation protein B compare
PP_2328 -1.0 -1.9 Phosphoadenosine phosphosulfate reductase compare
PP_3484 -1.0 -3.3 Response regulator receiver protein compare
PP_4214 -1.0 -1.2 pyoverdine biosynthesis related protein compare
PP_5546 -1.0 -1.6 conserved protein of unknown function compare
PP_0827 -1.0 -2.0 putative phosphonate transport system permease protein PtxC compare
PP_0291 -1.0 -1.3 conserved protein of unknown function compare
PP_1553 -1.0 -1.3 conserved protein of unknown function compare
PP_0482 -1.0 -3.4 bacterioferritin compare
PP_2409 -1.0 -1.7 cobalt-zinc-cadmium resistance protein compare
PP_4094 -1.0 -1.7 conserved protein of unknown function compare
PP_3978 -1.0 -2.4 conserved protein of unknown function compare
PP_1663 -0.9 -4.0 conserved exported protein of unknown function compare
PP_1269 -0.9 -1.3 Universal stress protein family compare
PP_0185 -0.9 -4.1 Positive alginate biosynthesis regulatory protein compare
PP_5216 -0.9 -0.9 exopolyphosphatase compare
PP_4084 -0.9 -1.6 conserved protein of unknown function compare
PP_5303 -0.9 -1.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0276 -0.9 -1.0 Transcriptional regulator, Cro/CI family compare
PP_4793 -0.9 -1.4 conserved protein of unknown function compare
PP_0951 -0.9 -3.2 Ribosome hibernation promoting factor compare
PP_2044 -0.9 -0.6 conserved inner membrane protein of unknown function compare
PP_2388 -0.9 -2.0 Transporter, LysE family compare
PP_4199 -0.9 -0.8 putative Lipoprotein compare
PP_1045 -0.9 -1.2 Type II secretion pathway protein XcpP compare
PP_3748 -0.9 -2.1 conserved hypothetical protein compare
PP_0910 -0.9 -2.1 conserved exported protein of unknown function compare
PP_4419 -0.9 -1.7 transposase compare
PP_3797 -0.9 -3.0 conserved membrane protein of unknown function compare
PP_3947 -0.9 -2.4 nicotinate dehydrogenase subunit A compare
PP_2061 -0.9 -2.2 conserved protein of unknown function compare
PP_4909 -0.9 -1.0 phosphoserine phosphatase compare
PP_0908 -0.9 -2.3 conserved exported protein of unknown function compare
PP_1491 -0.9 -3.0 CheW domain protein compare
PP_1078 -0.9 -2.1 putative ABC transporter, ATP-binding protein compare
PP_4897 -0.9 -2.4 N-acetylmuramoyl-L-alanine amidase compare
PP_0127 -0.9 -1.2 Thiol:disulfide interchange protein compare
PP_2373 -0.9 -1.9 conserved protein of unknown function compare
PP_3239 -0.9 -1.2 putative cointegrate resolution protein T Tn4652 compare
PP_2417 -0.8 -1.4 putative Iron ABC transporter, permease protein compare
PP_4058 -0.8 -0.6 1,4-alpha-glucan branching enzyme compare
PP_2793 -0.8 -1.8 Acyl-CoA dehydrogenase family protein compare
PP_2496 -0.8 -1.6 conserved protein of unknown function compare
PP_4069 -0.8 -1.6 conserved protein of unknown function compare
PP_0677 -0.8 -1.7 putative Lipoprotein compare
PP_3800 -0.8 -2.8 conserved protein of unknown function compare
PP_4504 -0.8 -1.3 conserved exported protein of unknown function compare
PP_2820 -0.8 -1.2 HTH-type transcriptional regulator nfxB compare
PP_0082 -0.8 -0.6 tryptophan synthase alpha chain compare
PP_2299 -0.8 -1.1 Trigger factor compare
PP_3473 -0.8 -2.4 curli secretion and assembly outer membrane associated component compare
PP_1082 -0.8 -2.0 bacterioferritin compare
PP_1621 -0.8 -2.4 Protein-L-isoaspartate O-methyltransferase compare
PP_4684 -0.8 -2.2 conserved protein of unknown function with kinase-like domain compare
PP_5475 -0.8 -1.1 conserved protein of unknown function compare
PP_4109 -0.8 -1.3 conserved protein of unknown function compare
PP_4448 -0.8 -3.5 conserved protein of unknown function compare
PP_5327 -0.8 -2.6 putative phosphate ABC transporter, permease subunit compare
PP_5489 -0.8 -1.6 conserved protein of unknown function compare
PP_4390 -0.8 -2.6 flagellar basal-body rod protein FlgC compare
PP_0083 -0.8 -0.5 tryptophan synthase beta chain compare
PP_1404 -0.8 -0.9 conserved protein of unknown function compare
PP_1348 -0.8 -2.5 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1012 -0.8 -2.1 DNA-binding response regulator compare
PP_4828 -0.8 -0.7 Precorrin-8X methylmutase compare
PP_4882 -0.8 -3.9 Iron ABC transporter, permease protein compare
PP_0260 -0.8 -2.2 ADP-sugar pyrophosphorylase compare
PP_1038 -0.8 -1.1 conserved protein of unknown function compare
PP_2060 -0.8 -1.3 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_2127 -0.8 -2.1 Sensor histidine kinase compare
PP_5313 -0.8 -1.2 DNA-binding protein HU-alpha compare
PP_4368 -0.8 -1.8 flagellar motor switch protein compare
PP_5110 -0.7 -0.9 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_3576 -0.7 -2.0 putative Transmembrane sensor compare
PP_4352 -0.7 -3.7 flagellin export apparatus, substrate specificity protein compare
PP_5571 -0.7 -1.0 conserved protein of unknown function compare


Specific Phenotypes

For 6 genes in this experiment