Experiment set8IT082 for Agrobacterium fabrum C58

Compare to:

Parafilmed volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
Atu6098 -4.2 -0.9 transcriptional regulator, HTH family compare
Atu0031 -3.3 -1.0 PTS system, IIA component compare
Atu4317 -3.2 -2.8 TetR family transcriptional regulator compare
Atu0434 -3.1 -2.1 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1030 -3.0 -1.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2057 -2.8 -3.1 DNA helicase II compare
Atu1850 -2.8 -2.2 phosphoribosylformylglycinamidine synthetase II compare
Atu1845 -2.6 -3.0 phosphoribosylformylglycinamidine synthase I compare
Atu1163 -2.6 -1.3 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu8087 -2.3 -0.7 putative peptidoglycan binding protein compare
Atu0115 -2.2 -0.8 hypothetical protein compare
Atu5513 -2.2 -2.0 cold shock protein compare
Atu1446 -2.2 -1.6 two component response regulator compare
Atu8018 -2.2 -0.7 hypothetical protein compare
Atu1470 -2.1 -1.1 Camphor resistance protein compare
Atu0769 -2.1 -1.4 protoheme IX farnesyltransferase compare
Atu0399 -2.0 -4.1 dihydroorotase compare
Atu2554 -2.0 -2.1 lysyl-tRNA synthetase compare
Atu3754 -1.9 -4.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0188 -1.9 -2.7 ABC transporter, membrane spanning protein (peptide) compare
Atu4217 -1.9 -1.2 TetR family transcriptional regulator compare
Atu5430 -1.8 -1.1 hypothetical protein compare
Atu2684 -1.7 -1.1 hypothetical protein compare
Atu0976 -1.7 -2.4 cycL protein compare
Atu4161 -1.7 -1.3 hypothetical protein compare
Atu4527 -1.6 -1.2 hypothetical protein compare
Atu0189 -1.6 -2.2 ABC transporter, membrane spanning protein (peptide) compare
Atu0999 -1.6 -5.5 magnesium transport protein compare
Atu2439 -1.6 -1.0 hypothetical protein compare
Atu2634 -1.5 -1.6 hypothetical protein compare
Atu3730 -1.5 -0.9 hypothetical protein compare
Atu4469 -1.5 -2.7 iron ABC transporter permease compare
Atu1417 -1.4 -4.8 enoyl-CoA hydratase compare
Atu4166 -1.4 -1.3 UDP-glucose 4-epimerase compare
Atu6165 -1.4 -1.1 hypothetical protein compare
Atu2207 -1.4 -3.4 two component sensor kinase compare
Atu1184 -1.4 -2.0 hypothetical protein compare
Atu0050 -1.4 -4.3 two component response regulator compare
Atu1141 -1.4 -4.6 Phosphoribosylglycinamide synthetase compare
Atu4470 -1.3 -4.3 iron ABC transporter ATPase compare
Atu2441 -1.3 -1.4 RNA methylase compare
Atu1110 -1.3 -1.8 cytosol aminopeptidase compare
Atu1052 -1.3 -2.1 hypothetical protein compare
Atu0190 -1.3 -5.0 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu3162 -1.3 -4.8 LacI family transcriptional regulator compare
Atu1028 -1.3 -1.4 hypothetical protein compare
Atu0647 -1.3 -3.6 phosphoribosylamine--glycine ligase compare
Atu8082 -1.3 -1.3 hypothetical protein compare
Atu2073 -1.3 -2.7 membrane protein compare
Atu2125 -1.3 -1.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu2532 -1.3 -2.9 transcriptional regulator, MarR family compare
Atu4451 -1.3 -6.7 mannitol 2-dehydrogenase compare
Atu3740 -1.2 -4.0 fructose bisphosphate aldolase compare
Atu1344 -1.2 -1.3 hypothetical protein compare
Atu1844 -1.2 -1.5 Phosphoribosylformylglycinamidine synthetase compare
Atu4685 -1.2 -4.5 LacI family transcriptional regulator compare
Atu1327 -1.2 -1.5 NADH-ubiquinone oxidoreductase compare
Atu2113 -1.2 -1.5 N-acetylmuramoyl-L-alanine amidase compare
Atu3183 -1.2 -0.5 hypothetical protein compare
Atu0723 -1.2 -1.2 FAD dependent oxidoreductase compare
Atu1737 -1.1 -1.1 hypothetical protein compare
Atu1140 -1.1 -2.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu4711 -1.1 -2.9 two component sensor kinase compare
Atu2432 -1.1 -1.3 hypothetical protein compare
Atu0051 -1.1 -3.6 two component sensor kinase compare
Atu1838 -1.1 -2.6 ABC transporter, substrate binding protein (amino acid) compare
Atu2827 -1.1 -1.7 hypothetical protein compare
Atu0141 -1.1 -1.0 cytochrome O ubiquinol oxidase subunit I compare
Atu1503 -1.1 -0.7 hypothetical protein compare
Atu2205 -1.1 -2.6 transcriptional regulator, MarR family compare
Atu3739 -1.1 -1.4 phosphoglycerate kinase compare
Atu1469 -1.1 -1.3 hypothetical protein compare
Atu3750 -1.1 -2.2 thiamine-phosphate pyrophosphorylase compare
Atu1904 -1.1 -2.0 transcriptional regulator compare
Atu3387 -1.1 -2.1 sigma factor compare
Atu4446 -1.1 -1.9 hypothetical protein compare
Atu3491 -1.1 -1.4 hypothetical protein compare
Atu0071 -1.0 -3.5 ribonucleoside-diphosphate reductase 2 beta chain compare
Atu0762 -1.0 -1.5 hypothetical protein compare
Atu1529 -1.0 -2.9 nitrogen fixation protein FixH compare
Atu3763 -1.0 -1.0 hypothetical protein compare
Atu5125 -1.0 -2.8 GntR family transcriptional regulator compare
Atu5045 -1.0 -1.4 hypothetical protein compare
Atu0486 -1.0 -2.1 dihydroorotate dehydrogenase compare
Atu0460 -1.0 -2.7 hypothetical protein compare
Atu1307 -1.0 -2.3 dihydroorotase compare
Atu0401 -1.0 -3.6 fructokinase compare
Atu2657 -1.0 -1.5 hypothetical protein compare
Atu1619 -1.0 -1.7 protein-export membrane protein SECG compare
Atu0062 -0.9 -2.8 transcriptional regulator, ROK family compare
Atu2237 -0.9 -2.2 cytochrome c1 compare
Atu3727 -0.9 -1.5 hypothetical protein compare
Atu6159 -0.9 -1.9 hypothetical protein compare
Atu3481 -0.9 -3.2 enoyl-CoA hydratase compare
Atu0971 -0.9 -2.5 two component sensor kinase compare
Atu0544 -0.9 -1.0 hypothetical protein compare
Atu3572 -0.9 -5.5 transcriptional regulator compare
Atu8191 -0.9 -0.9 hypothetical protein compare
Atu2803 -0.9 -1.8 Cobalamin biosynthesis associated protein compare
Atu1739 -0.9 -2.0 permease compare
Atu8052 -0.9 -0.9 hypothetical protein compare
Atu1075 -0.9 -2.5 amidophosphoribosyltransferase compare
Atu0142 -0.9 -1.6 cytochrome o ubiquinol oxidase subunit II compare
Atu1620 -0.9 -4.0 triosephosphate isomerase compare
Atu3293 -0.9 -2.1 D-amino acid dehydrogenase small subunit compare
Atu0421 -0.9 -0.6 ABC transporter, membrane spanning protein compare
Atu1102 -0.9 -2.8 hypothetical protein compare
Atu5169 -0.9 -2.2 type IV secretion protein AvhB8 compare
Atu1774 -0.9 -2.5 ABC transporter, substrate binding protein (peptide) compare
Atu2029 -0.8 -2.3 hypothetical protein compare
Atu2738 -0.8 -3.2 nucleoside-diphosphate-sugar epimerase compare
Atu1302 -0.8 -1.6 hypothetical protein compare
Atu1333 -0.8 -1.5 outer membrane protein compare
Atu2239 -0.8 -1.7 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu6114 -0.8 -1.2 hypothetical protein compare
Atu0471 -0.8 -1.8 hypothetical protein compare
Atu2809 -0.8 -4.1 cobalamin biosynthesis protein compare
Atu5061 -0.8 -2.5 glycerophosphoryl diester phosphodiesterase compare
Atu1021 -0.8 -1.0 outer membrane protein compare
Atu0638 -0.8 -1.1 hypothetical protein compare
Atu2368 -0.8 -0.6 hypothetical protein compare
Atu4505 -0.8 -3.0 LacI family transcriptional regulator compare
Atu0464 -0.8 -3.9 hypothetical protein compare
Atu0784 -0.8 -1.0 hypothetical protein compare
Atu3712 -0.8 -0.8 hypothetical protein compare
Atu1364 -0.8 -2.1 ATP-dependent Clp protease, ATP-binding subunit compare
Atu4825 -0.8 -2.8 dehydrogenase compare
Atu2317 -0.8 -2.0 hypothetical protein compare
Atu1983 -0.8 -2.5 hypothetical protein compare
Atu1480 -0.8 -1.4 hypothetical protein compare
Atu0079 -0.8 -3.5 Atu0079-1 mutant of pfkB family carbohydrate kinase compare
Atu2052 -0.8 -2.9 hypothetical protein compare
Atu3480 -0.8 -3.9 hydroxymethylglutaryl-CoA lyase compare
Atu5501 -0.8 -1.5 hypothetical protein compare
Atu3910 -0.8 -1.9 LamB/YcsF family protein compare
Atu1308 -0.8 -2.5 aspartate carbamoyl transferase catalytic subunit compare
Atu3986 -0.8 -3.5 hypothetical protein compare
Atu3776 -0.8 -2.1 hypothetical protein compare
Atu3469 -0.8 -1.1 phosphoglyceromutase compare
Atu2805 -0.8 -2.7 cobalamin synthesis protein compare
Atu0528 -0.8 -1.2 large conductance mechanosensitive channel protein compare
Atu0578 -0.8 -1.6 FlbT post-transcriptional regulator of flagellin compare
Atu3075 -0.8 -2.9 TetR family transcriptional regulator compare
Atu1973 -0.8 -1.8 hypothetical protein compare
Atu0470 -0.8 -0.9 hypothetical protein compare
Atu2728 -0.8 -2.4 beta (1-->2) glucan export ATP-binding protein compare
Atu2477 -0.8 -2.0 DNA oxidation protective protein, not DNA-binding compare
Atu3114 -0.8 -3.2 sugar ABC transporter substrate-binding protein compare
Atu0038 -0.8 -1.9 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2045 -0.7 -3.1 HFLK protein compare
Atu0184 -0.7 -1.1 glucokinase compare
Atu0322 -0.7 -1.9 enoyl CoA hydratase compare
Atu3289 -0.7 -1.5 thiamine-phosphate pyrophosphorylase compare
Atu1286 -0.7 -1.9 hypothetical protein compare
Atu8161 -0.7 -0.7 hypothetical protein compare
Atu4471 -0.7 -2.6 ABC transporter substrate-binding protein compare
Atu0977 -0.7 -2.0 serine protease DO-like protease compare
Atu2831 -0.7 -2.4 glucose inhibited division protein A compare
Atu2044 -0.7 -2.4 HFLC protein compare
Atu0912 -0.7 -0.6 Na+/H+ antiporter compare
Atu1449 -0.7 -1.9 potassium uptake protein compare
Atu4737 -0.7 -1.1 hypothetical protein compare
Atu5205 -0.7 -3.0 hypothetical protein compare
Atu1692 -0.7 -1.8 hypothetical protein compare
Atu1694 -0.7 -1.2 hypothetical protein compare
Atu4468 -0.7 -1.9 iron transport ABC transporter permease compare
Atu1801 -0.7 -0.9 hypothetical protein compare
Atu4108 -0.7 -3.8 ribonuclease D compare
Atu0893 -0.7 -2.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu5464 -0.7 -3.8 IclR family transcriptional regulator compare
Atu3624 -0.7 -2.2 stress induced morphogen compare
Atu2442 -0.7 -0.8 hypothetical protein compare
Atu3532 -0.7 -2.9 GntR family transcriptional regulator compare
Atu3721 -0.7 -1.1 hypothetical protein compare
Atu5075 -0.7 -3.0 GntR family transcriptional regulator compare
Atu2534 -0.7 -2.6 outer membrane protein compare
Atu0887 -0.7 -2.2 acetyltransferase compare
Atu0869 -0.7 -2.9 hypothetical protein compare
Atu3160 -0.7 -1.1 hypothetical protein compare
Atu1056 -0.7 -2.3 hypothetical protein compare
Atu2374 -0.7 -2.4 hypothetical protein compare
Atu0130 -0.7 -1.6 cytidine deaminase compare
Atu2169 -0.7 -2.4 hypothetical protein compare
Atu4129 -0.7 -1.8 3-hydroxyisobutyrate dehydrogenase compare
Atu0276 -0.7 -1.4 hypothetical protein compare
Atu2574 -0.7 -2.4 hypothetical protein compare
Atu0859 -0.7 -1.9 hypothetical protein compare
Atu1678 -0.7 -2.7 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu1513 -0.7 -2.0 ABC excinuclease subunit A compare
Atu1339 -0.7 -0.8 ribonuclease E compare
Atu3095 -0.7 -1.3 hypothetical protein compare
Atu2067 -0.7 -0.4 hypothetical protein compare
Atu4718 -0.7 -2.9 GntR family transcriptional regulator compare
Atu2115 -0.7 -3.0 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu2176 -0.7 -2.2 hypothetical protein compare
Atu4671 -0.7 -1.2 response regulator compare
Atu2043 -0.7 -3.2 htrA family protein compare
Atu1902 -0.7 -2.3 transketolase compare
Atu8133 -0.7 -2.3 hypothetical protein compare
Atu8154 -0.7 -1.7 Plasmid stabilization system protein compare


Specific Phenotypes

For 2 genes in this experiment