Experiment set8IT081 for Escherichia coli BW25113
LB Aerobic with Doxycycline hyclate 0.00000625 mM
Group: stressMedia: LB + Doxycycline hyclate (6.25E-03 mM)
Culturing: Keio_ML9a, 96 deep-well microplate; Multitron, Aerobic, at 37 (C), shaken=750 rpm
By: Hans_Hualan on 7/20/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 6 genes in this experiment
For stress Doxycycline hyclate in Escherichia coli BW25113
For stress Doxycycline hyclate across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| KDO2-Lipid A biosynthesis | 1 |
| Rhamnose containing glycans | 1 |
| dTDP-rhamnose synthesis | 1 |
| linker unit-arabinogalactan synthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| di-trans,poly-cis-undecaprenyl phosphate biosynthesis | 2 | 2 | 1 |
| polyisoprenoid biosynthesis (E. coli) | 5 | 5 | 1 |
| dTDP-β-L-rhamnose biosynthesis | 5 | 5 | 1 |
| O-antigen building blocks biosynthesis (E. coli) | 11 | 11 | 1 |
| superpathway of dTDP-glucose-derived O-antigen building blocks biosynthesis | 19 | 7 | 1 |
| superpathway of mycolyl-arabinogalactan-peptidoglycan complex biosynthesis | 33 | 14 | 1 |