Experiment set8IT080 for Pseudomonas putida KT2440

Compare to:

Adaptation in M9 media timecourse 3; day 2

200 most important genes:

  gene name fitness t score description  
PP_0967 -3.5 -10.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4994 -3.5 -5.3 conserved protein of unknown function compare
PP_2168 -3.5 -10.0 Transaldolase compare
PP_0292 -3.4 -4.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0290 -3.2 -9.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4701 -2.9 -2.0 glucose-6-phosphate isomerase compare
PP_0966 -2.8 -10.0 Histidinol dehydrogenase compare
PP_5289 -2.6 -5.2 Acetylglutamate kinase compare
PP_1088 -2.6 -10.7 Argininosuccinate synthase compare
PP_0289 -2.6 -6.1 Imidazoleglycerol-phosphate dehydratase compare
PP_1898 -2.4 -3.3 MotA/TolQ/ExbB proton channel family protein compare
PP_1231 -2.3 -5.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4723 -2.2 -2.7 Carbamoyl-phosphate synthase large chain compare
PP_4890 -2.2 -5.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_1079 -2.0 -6.2 Ornithine carbamoyltransferase compare
PP_3511 -2.0 -8.7 Branched-chain-amino-acid aminotransferase compare
PP_5155 -2.0 -3.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0184 -1.9 -4.9 Argininosuccinate lyase compare
PP_1988 -1.9 -8.5 3-isopropylmalate dehydrogenase compare
PP_0965 -1.8 -7.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0291 -1.8 -3.2 conserved protein of unknown function compare
PP_5216 -1.8 -2.6 exopolyphosphatase compare
PP_4909 -1.8 -5.5 phosphoserine phosphatase compare
PP_0001 -1.8 -1.2 probable chromosome-partitioning protein compare
PP_5185 -1.8 -5.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4532 -1.8 -2.0 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1986 -1.7 -3.2 3-isopropylmalate dehydratase small subunit compare
PP_4679 -1.7 -5.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4058 -1.7 -6.9 1,4-alpha-glucan branching enzyme compare
PP_2433 -1.7 -3.2 conserved protein of unknown function compare
PP_1985 -1.7 -5.0 3-isopropylmalate dehydratase large subunit compare
PP_5015 -1.7 -3.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5014 -1.7 -1.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_0787 -1.7 -5.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4561 -1.6 -1.3 stress response protein compare
PP_4724 -1.6 -2.1 Carbamoyl-phosphate synthase small chain compare
PP_4836 -1.6 -3.5 conserved exported protein of unknown function compare
PP_4680 -1.6 -9.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4678 -1.6 -11.0 Ketol-acid reductoisomerase compare
PP_5128 -1.6 -6.7 Dihydroxy-acid dehydratase compare
PP_0293 -1.5 -2.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3880 -1.4 -2.0 conserved exported protein of unknown function compare
PP_3376 -1.4 -5.9 putative phosphonate dehydrogenase compare
PP_3946 -1.4 -1.3 HTH-type transcriptional repressor NicR compare
PP_1778 -1.4 -4.2 Lipopolysaccharide ABC export system, permease protein compare
PP_5095 -1.3 -1.5 pyrroline-5-carboxylate reductase compare
PP_0339 -1.3 -3.3 Pyruvate dehydrogenase E1 component compare
PP_0691 -1.3 -2.4 Glutamate 5-kinase compare
PP_0888 -1.3 -0.8 Photosynthetic apparatus regulatory protein RegA compare
PP_1428 -1.3 -1.4 Sigma factor AlgU negative regulatory protein compare
PP_0261 -1.2 -4.9 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_1779 -1.2 -4.4 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_0003 -1.2 -2.7 16S RNA methyltransferase compare
PP_0082 -1.2 -3.2 tryptophan synthase alpha chain compare
PP_0035 -1.1 -2.7 putative bactoprenol-linked glycose transferase compare
PP_2348 -1.1 -3.4 Sensor histidine kinase compare
PP_2442 -1.1 -2.2 conserved protein of unknown function, DUF480 family compare
PP_0111 -1.1 -4.2 Electron transport protein SCO1/SenC compare
PP_4505 -1.1 -3.8 Sensor histidine kinase compare
PP_0775 -1.0 -1.5 conserved protein of unknown function compare
PP_4008 -1.0 -1.9 ATP-dependent serine protease compare
PP_1111 -1.0 -5.7 putative Synthetase compare
PP_4217 -1.0 -8.4 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_5546 -1.0 -2.7 conserved protein of unknown function compare
PP_1110 -1.0 -3.8 serine acetyltransferase compare
PP_3726 -1.0 -1.9 Enoyl-CoA hydratase/isomerase family protein compare
PP_1025 -0.9 -6.1 2-isopropylmalate synthase compare
PP_4265 -0.9 -1.7 DNA-binding transcriptional dual regulator compare
PP_4264 -0.9 -3.9 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_4004 -0.9 -1.4 DNA translocase FtsK compare
PP_1763 -0.9 -1.8 putative oxidoreductase compare
PP_4262 -0.9 -1.6 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1185 -0.9 -2.9 Outer membrane protein H1 compare
PP_2907 -0.9 -2.2 DNA-binding response regulator compare
PP_5350 -0.9 -1.7 Transcriptional regulator, RpiR family compare
PP_1598 -0.9 -2.3 regulatory intramembrane protein RIP zinc protease compare
PP_4120 -0.9 -1.0 NADH-quinone oxidoreductase subunit B compare
PP_4208 -0.9 -3.7 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_0083 -0.9 -2.8 tryptophan synthase beta chain compare
PP_2028 -0.9 -2.0 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_4902 -0.8 -1.1 Oligoribonuclease compare
PP_1460 -0.8 -6.1 putative Membrane protein compare
PP_2142 -0.8 -2.5 Cell division inhibitor SulA compare
PP_5140 -0.8 -2.6 Transcriptional regulator, MerR family compare
PP_4482 -0.8 -2.7 Transcriptional regulator, AraC family compare
PP_0240 -0.8 -2.8 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_3903 -0.8 -1.3 conserved protein of unknown function compare
PP_5600 -0.8 -2.4 conserved protein of unknown function compare
PP_0241 -0.8 -2.7 Transporter compare
PP_3916 -0.8 -1.8 conserved protein of unknown function compare
PP_5295 -0.8 -1.7 conserved protein of unknown function compare
PP_3332 -0.8 -2.5 putative cytochrome c-type protein compare
PP_4696 -0.8 -1.7 Nitrogen regulation protein NR(I) compare
PP_5053 -0.8 -3.2 Protein-export protein SecB compare
PP_0421 -0.8 -3.9 Anthranilate phosphoribosyltransferase compare
PP_4342 -0.8 -1.3 flagellar synthesis regulator, putative ATPase compare
PP_0422 -0.8 -3.5 Indole-3-glycerol phosphate synthase compare
PP_0959 -0.8 -1.6 phospholipid ABC transporter compare
PP_0351 -0.7 -3.7 putative Transmembrane sensor protein compare
PP_4009 -0.7 -2.9 ATP-dependent Clp protease adapter protein ClpS compare
PP_4837 -0.7 -1.7 conserved protein of unknown function compare
PP_4098 -0.7 -1.3 UvrABC system protein C compare
PP_4999 -0.7 -0.5 dihydroorotase-like protein compare
PP_1513 -0.7 -1.7 Ribosomal RNA small subunit methyltransferase J compare
PP_4156 -0.7 -1.8 Transcriptional regulator, LysR family compare
PP_2747 -0.7 -1.4 conserved protein of unknown function compare
PP_0913 -0.7 -2.9 conserved exported protein of unknown function compare
PP_0040 -0.7 -1.9 hypothetical protein compare
PP_3971 -0.7 -1.4 conserved protein of unknown function compare
PP_3505 -0.7 -1.7 conserved protein of unknown function compare
PP_0086 -0.7 -1.6 conserved protein of unknown function compare
PP_5748 -0.7 -1.5 cytochrome c heme lyase subunit compare
PP_5390 -0.7 -3.1 conserved hypothetical protein compare
PP_5735 -0.7 -2.5 conserved hypothetical protein compare
PP_0910 -0.7 -3.1 conserved exported protein of unknown function compare
PP_2820 -0.7 -1.2 HTH-type transcriptional regulator nfxB compare
PP_3359 -0.7 -1.1 putative Hydroxycinnamic acid degradation regulator compare
PP_0007 -0.7 -1.3 conserved hypothetical protein compare
PP_1995 -0.7 -3.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5000 -0.7 -1.0 peptidase component of the ATP-dependent HslVU protease compare
PP_1623 -0.7 -4.6 RNA polymerase, sigma S (sigma 38) factor compare
PP_5580 -0.7 -1.7 protein of unknown function compare
PP_0593 -0.7 -0.7 putative ribosome-binding factor compare
PP_1664 -0.7 -1.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_0048 -0.7 -0.9 conserved protein of unknown function compare
PP_0420 -0.7 -4.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1109 -0.7 -5.0 Transcriptional regulator, GntR family compare
PP_0258 -0.6 -2.6 regulator of murein cross-linking compare
PP_5621 -0.6 -1.5 protein of unknown function compare
PP_0673 -0.6 -1.9 conserved protein of unknown function compare
PP_2152 -0.6 -1.8 glycerophosphoryl diester phosphodiesterase compare
PP_1646 -0.6 -2.9 putative Thioredoxin compare
PP_2764 -0.6 -1.9 FMN reductase (NADPH) compare
PP_2409 -0.6 -2.1 cobalt-zinc-cadmium resistance protein compare
PP_5110 -0.6 -0.8 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_3766 -0.6 -1.6 Lactoylglutathione lyase compare
PP_0852 -0.6 -1.2 Transcriptional regulator, Cro/CI family compare
PP_3767 -0.6 -2.8 conserved protein of unknown function compare
PP_0908 -0.6 -3.1 conserved exported protein of unknown function compare
PP_1548 -0.6 -1.8 conserved protein of unknown function compare
PP_5073 -0.6 -1.9 conserved exported protein of unknown function compare
PP_1468 -0.6 -0.7 Tyrosine recombinase XerD compare
PP_1300 -0.6 -1.2 putative amino acid ABC transporter - ATP-binding subunit compare
PP_4688 -0.6 -2.9 Heme/hemin ABC transporter, permease protein compare
PP_5051 -0.6 -1.5 conserved protein of unknown function compare
PP_5365 -0.6 -4.1 putative fatty acid methyltransferase compare
PP_5348 -0.6 -3.5 Transcriptional regulator, LysR family compare
PP_2510 -0.6 -1.0 conserved protein of unknown function compare
PP_0919 -0.6 -1.8 conserved protein of unknown function compare
PP_2302 -0.6 -1.6 DNA-binding, ATP-dependent protease compare
PP_4681 -0.6 -2.0 conserved protein of unknown function compare
PP_5661 -0.6 -2.1 putative lipoprotein compare
PP_0357 -0.6 -2.5 ACT domain protein compare
PP_3051 -0.6 -2.3 Pyocin R2_PP, tail spike protein compare
PP_4838 -0.6 -4.3 Outer membrane copper receptor OprC compare
PP_4707 -0.6 -1.7 OsmY-related protein compare
PP_0482 -0.6 -3.4 bacterioferritin compare
PP_0909 -0.6 -3.0 conserved exported protein of unknown function compare
PP_0839 -0.6 -1.3 tRNA Cm32/Um32 methyltransferase compare
PP_3017 -0.6 -1.9 O6-methylguanine-DNA methyltransferase compare
PP_4870 -0.5 -1.1 Azurin compare
PP_0417 -0.5 -4.3 Anthranilate synthase component 1 compare
PP_0094 -0.5 -2.5 5'-nucleotidase compare
PP_5058 -0.5 -2.0 Carboxy-terminal-processing protease compare
PP_0231 -0.5 -2.8 taurine ABC transporter permease subunit compare
PP_0002 -0.5 -2.5 probable chromosome partition protein compare
PP_1571 -0.5 -2.0 conserved protein of unknown function compare
PP_1926 -0.5 -1.4 putative phosphotyrosine-protein phosphatase compare
PP_1055 -0.5 -0.7 Type II secretion pathway protein GspN compare
PP_1397 -0.5 -2.2 conserved protein of unknown function compare
PP_2714 -0.5 -1.9 Sensor histidine kinase compare
PP_4060 -0.5 -4.0 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_1307 -0.5 -1.7 AsnC family transcriptional regulator compare
PP_1020 -0.5 -0.9 putative glucose-6-phosphate 1-epimerase compare
PP_3284 -0.5 -1.8 enoyl-CoA hydratase-isomerase compare
PP_5644 -0.5 -0.9 conserved membrane protein of unknown function compare
PP_1206 -0.5 -2.5 basic-amino-acid specific porin OprD compare
PP_5589 -0.5 -1.3 protein of unknown function containing Rhs repeat-associated core domain compare
PP_3117 -0.5 -1.8 putative protein involved in error-prone processing of DNA lesions compare
PP_0126 -0.5 -1.0 Cytochrome c4 compare
PP_4792 -0.5 -0.9 conserved exported protein of unknown function compare
PP_t11 -0.5 -1.3 tRNA-Lys compare
PP_2144 -0.5 -1.3 Transcriptional regulator, TetR family compare
PP_3837 -0.5 -2.0 inner membrane protein of unknown function compare
PP_1759 -0.5 -2.1 conserved exported protein of unknown function compare
PP_2793 -0.5 -1.6 Acyl-CoA dehydrogenase family protein compare
PP_3662 -0.5 -3.0 conserved protein of unknown function compare
PP_0903 -0.5 -2.0 conserved protein of unknown function compare
PP_1034 -0.5 -3.0 multicopper oxidase compare
PP_0087 -0.5 -1.3 conserved exported protein of unknown function compare
PP_3417 -0.5 -2.1 D-gluconate transporter compare
PP_5507 -0.5 -1.2 protein of unknown function compare
PP_3190 -0.5 -1.5 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_5582 -0.5 -1.0 conserved protein of unknown function compare
PP_1736 -0.5 -1.1 conserved protein of unknown function compare
PP_3551 -0.5 -0.6 DNA-binding response regulator, LuxR family compare
PP_4897 -0.5 -2.0 N-acetylmuramoyl-L-alanine amidase compare
PP_3850 -0.5 -1.9 conserved protein of unknown function compare
PP_1078 -0.5 -2.2 putative ABC transporter, ATP-binding protein compare
PP_5712 -0.5 -1.2 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in reactor_pregrowth experiments