| | gene | name | fitness | t score | description | |
|---|
| b0463 | acrA | -5.1 | -4.9 | multidrug efflux system (NCBI) | compare |
| b0462 | acrB | -4.9 | -6.7 | multidrug efflux system protein (NCBI) | compare |
| b1085 | b1085 | -4.1 | -2.8 | orf, hypothetical protein (VIMSS) | compare |
| b3035 | tolC | -3.8 | -3.7 | outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) | compare |
| b1677 | lpp | -3.8 | -2.5 | murein lipoprotein (NCBI) | compare |
| b2512 | yfgL | -3.7 | -2.6 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b2494 | yfgC | -3.2 | -7.7 | predicted peptidase (NCBI) | compare |
| b0178 | hlpA | -3.2 | -4.3 | periplasmic chaperone (NCBI) | compare |
| b4451 | ryhB | -3.0 | -2.0 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b1855 | lpxM | -3.0 | -4.4 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b1830 | prc | -2.8 | -2.7 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b4201 | priB | -2.8 | -2.6 | primosomal replication protein N (NCBI) | compare |
| b3842 | rfaH | -2.8 | -3.3 | transcriptional activator RfaH (NCBI) | compare |
| b1176 | minC | -2.7 | -2.6 | septum formation inhibitor (NCBI) | compare |
| b2168 | fruK | -2.7 | -1.8 | 1-phosphofructokinase (NCBI) | compare |
| b0605 | ahpC | -2.7 | -3.6 | alkyl hydroperoxide reductase, C22 subunit (NCBI) | compare |
| b3632 | rfaQ | -2.7 | -10.9 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b3609 | secB | -2.6 | -3.5 | export protein SecB (NCBI) | compare |
| b0015 | dnaJ | -2.6 | -7.5 | chaperone Hsp40, co-chaperone with DnaK (NCBI) | compare |
| b2299 | yfcD | -2.6 | -4.7 | predicted NUDIX hydrolase (NCBI) | compare |
| b3052 | rfaE | -2.5 | -2.9 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b1853 | yebK | -2.4 | -3.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3404 | envZ | -2.4 | -9.4 | osmolarity sensor protein (NCBI) | compare |
| b3791 | rffA | -2.4 | -7.2 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b2413 | cysZ | -2.4 | -6.4 | putative sulfate transport protein CysZ (NCBI) | compare |
| b2215 | ompC | -2.3 | -6.7 | outer membrane porin protein C (NCBI) | compare |
| b3163 | nlpI | -2.3 | -3.1 | hypothetical protein (NCBI) | compare |
| b0222 | lpcA | -2.3 | -1.6 | phosphoheptose isomerase (NCBI) | compare |
| b3199 | yrbK | -2.3 | -2.7 | hypothetical protein (NCBI) | compare |
| b3794 | rffM | -2.3 | -7.0 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b3387 | dam | -2.3 | -8.9 | DNA adenine methylase (NCBI) | compare |
| b0677 | nagA | -2.3 | -4.5 | N-acetylglucosamine-6-phosphate deacetylase (NCBI) | compare |
| b3405 | ompR | -2.3 | -6.2 | osmolarity response regulator (NCBI) | compare |
| b3631 | rfaG | -2.2 | -7.3 | glucosyltransferase I (NCBI) | compare |
| b4159 | yjeP | -2.2 | -15.1 | predicted mechanosensitive channel (NCBI) | compare |
| b3621 | rfaC | -2.1 | -2.1 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b4481 | rffT | -2.1 | -5.7 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b3630 | rfaP | -2.1 | -4.0 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b0014 | dnaK | -2.1 | -1.4 | molecular chaperone DnaK (NCBI) | compare |
| b4000 | hupA | -2.1 | -4.9 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b0053 | surA | -2.1 | -1.4 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b3032 | cpdA | -2.1 | -6.6 | cyclic 3',5'-adenosine monophosphate phosphodiesterase (NCBI) | compare |
| b2314 | dedD | -2.1 | -3.5 | putative lipoprotein (VIMSS) | compare |
| b1175 | minD | -2.1 | -3.8 | membrane ATPase of the MinC-MinD-MinE system (NCBI) | compare |
| b0683 | fur | -2.0 | -1.3 | ferric uptake regulator (NCBI) | compare |
| b0738 | tolR | -2.0 | -1.4 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b1954 | dsrA | -2.0 | -2.5 | regulatory antisense RNA (NCBI) | compare |
| b3784 | rfe | -2.0 | -10.8 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b1882 | cheY | -1.9 | -1.0 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b3620 | rfaF | -1.9 | -2.3 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b2317 | dedA | -1.9 | -4.3 | conserved inner membrane protein (NCBI) | compare |
| b0724 | sdhB | -1.8 | -5.7 | succinate dehydrogenase, FeS subunit (NCBI) | compare |
| b1429 | tehA | -1.8 | -1.1 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b0149 | mrcB | -1.8 | -9.8 | penicillin-binding protein 1b (NCBI) | compare |
| b3787 | rffD | -1.8 | -8.9 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) | compare |
| b1103 | ycfF | -1.8 | -1.6 | orf, hypothetical protein (VIMSS) | compare |
| b2174 | b2174 | -1.8 | -6.7 | orf, hypothetical protein (VIMSS) | compare |
| b2532 | yfhQ | -1.8 | -3.1 | predicted methyltransferase (NCBI) | compare |
| b3790 | rffC | -1.8 | -4.0 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b2501 | ppk | -1.8 | -6.6 | polyphosphate kinase (NCBI) | compare |
| b4220 | ytfM | -1.8 | -9.5 | predicted outer membrane protein and surface antigen (NCBI) | compare |
| b0726 | sucA | -1.8 | -3.0 | alpha-ketoglutarate decarboxylase (NCBI) | compare |
| b3619 | rfaD | -1.7 | -1.2 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b1192 | ldcA | -1.7 | -4.2 | L,D-carboxypeptidase A (NCBI) | compare |
| b1531 | marA | -1.7 | -3.7 | multiple antibiotic resistance; transcriptional activator of defense systems (VIMSS) | compare |
| b1831 | proQ | -1.7 | -3.4 | putative solute/DNA competence effector (NCBI) | compare |
| b3935 | priA | -1.7 | -1.4 | primosome assembly protein PriA (NCBI) | compare |
| b2617 | smpA | -1.7 | -2.6 | small membrane protein A (VIMSS) | compare |
| b4221 | ytfN | -1.6 | -12.0 | hypothetical protein (NCBI) | compare |
| b0688 | pgm | -1.6 | -1.5 | phosphoglucomutase (NCBI) | compare |
| b4538 | yoeF | -1.6 | -1.5 | hypothetical protein (RefSeq) | compare |
| b3017 | sufI | -1.6 | -9.0 | repressor protein for FtsI (NCBI) | compare |
| b3194 | yrbE | -1.6 | -8.1 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b3778 | rep | -1.6 | -3.5 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b1860 | ruvB | -1.6 | -1.0 | Holliday junction DNA helicase B (NCBI) | compare |
| b4603 | rseX | -1.6 | -0.8 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b1575 | dicB | -1.6 | -1.7 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b4701 | sokX | -1.6 | -1.0 | sok-related sRNA, function unknown (RefSeq) | compare |
| b3786 | rffE | -1.5 | -9.2 | UDP-N-acetyl glucosamine-2-epimerase (NCBI) | compare |
| b3192 | yrbC | -1.5 | -7.1 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b1594 | dgsA | -1.5 | -2.9 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1984 | asnW | -1.5 | -1.4 | tRNA-Asn (NCBI) | compare |
| b3195 | yrbF | -1.5 | -7.9 | predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b1236 | galU | -1.5 | -2.4 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b1863 | ruvC | -1.5 | -1.6 | Holliday junction resolvase (NCBI) | compare |
| b3193 | yrbD | -1.5 | -6.8 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b4171 | miaA | -1.5 | -1.7 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b0436 | tig | -1.5 | -5.6 | trigger factor (NCBI) | compare |
| b1348 | lar | -1.5 | -1.6 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b0957 | ompA | -1.5 | -2.7 | outer membrane protein A (3a;II*;G;d) (NCBI) | compare |
| b2188 | yejM | -1.4 | -6.6 | predicted hydrolase, inner membrane (NCBI) | compare |
| b3803 | hemX | -1.4 | -7.5 | predicted uroporphyrinogen III methylase (NCBI) | compare |
| b1907 | tyrP | -1.4 | -3.8 | tyrosine transporter (NCBI) | compare |
| b2642 | yfjW | -1.4 | -0.9 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b0723 | sdhA | -1.4 | -7.1 | succinate dehydrogenase flavoprotein subunit (NCBI) | compare |
| b3236 | mdh | -1.4 | -5.9 | malate dehydrogenase (NCBI) | compare |
| b3226 | yhcK | -1.4 | -3.6 | putative FADA-type transcriptional regulator (VIMSS) | compare |
| b3740 | gidB | -1.4 | -7.8 | glucose-inhibited division protein B (NCBI) | compare |
| b0739 | tolA | -1.4 | -1.3 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b3792 | wzxE | -1.4 | -3.9 | O-antigen translocase (NCBI) | compare |
| b3962 | udhA | -1.4 | -4.0 | putative oxidoreductase (VIMSS) | compare |
| b0065 | yabI | -1.3 | -4.3 | conserved inner membrane protein (NCBI) | compare |
| b0505 | allA | -1.3 | -2.0 | ureidoglycolate hydrolase (NCBI) | compare |
| b3860 | dsbA | -1.3 | -5.6 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b1095 | fabF | -1.3 | -5.1 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b0730 | mngR | -1.3 | -0.9 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b1198 | dhaM | -1.3 | -4.0 | fused predicted dihydroxyacetone-specific PTS enzymes: HPr component/EI component (RefSeq) | compare |
| b1304 | pspA | -1.3 | -2.2 | regulatory protein for phage-shock-protein operon (NCBI) | compare |
| b1346 | ydaQ | -1.3 | -1.4 | orf, hypothetical protein (VIMSS) | compare |
| b3933 | ftsN | -1.3 | -7.2 | essential cell division protein (NCBI) | compare |
| b0737 | tolQ | -1.3 | -1.4 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b4139 | aspA | -1.3 | -5.8 | aspartate ammonia-lyase (aspartase) (VIMSS) | compare |
| b4676 | yoaK | -1.3 | -0.8 | expressed protein (RefSeq) | compare |
| b1286 | rnb | -1.3 | -1.6 | exoribonuclease II (NCBI) | compare |
| b4436 | ryeC | -1.3 | -1.4 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b2741 | rpoS | -1.3 | -3.7 | RNA polymerase sigma factor (NCBI) | compare |
| b1185 | dsbB | -1.3 | -2.2 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b1604 | ydgH | -1.3 | -3.1 | hypothetical protein (NCBI) | compare |
| b0741 | pal | -1.2 | -2.2 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b2572 | rseA | -1.2 | -3.7 | anti-sigma factor (NCBI) | compare |
| b1763 | topB | -1.2 | -2.7 | DNA topoisomerase III (NCBI) | compare |
| b0249 | ykfF | -1.2 | -2.1 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b4588 | ylcH | -1.2 | -2.9 | hypothetical protein, DLP12 prophage (RefSeq) | compare |
| b3191 | yrbB | -1.2 | -5.8 | orf, hypothetical protein (VIMSS) | compare |
| b3398 | yrfF | -1.2 | -2.0 | predicted inner membrane protein (NCBI) | compare |
| b3627 | rfaI | -1.1 | -4.4 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b3963 | fabR | -1.1 | -6.5 | DNA-binding transcriptional repressor (RefSeq) | compare |
| b2665 | ygaU | -1.1 | -3.9 | hypothetical protein (NCBI) | compare |
| b2346 | vacJ | -1.1 | -4.7 | predicted lipoprotein (NCBI) | compare |
| b4503 | yafF | -1.1 | -0.7 | no description | compare |
| b0706 | ybfD | -1.1 | -1.0 | hypothetical protein (NCBI) | compare |
| b4453 | ldrD | -1.1 | -1.8 | toxic polypeptide, small (NCBI) | compare |
| b1584 | speG | -1.1 | -4.4 | spermidine N1-acetyltransferase (NCBI) | compare |
| b2666 | yqaE | -1.1 | -2.3 | predicted membrane protein (NCBI) | compare |
| b1105 | ycfM | -1.1 | -2.3 | predicted outer membrane lipoprotein (NCBI) | compare |
| b4025 | pgi | -1.1 | -4.6 | glucose-6-phosphate isomerase (NCBI) | compare |
| b2893 | dsbC | -1.1 | -3.9 | protein disulfide isomerase II (NCBI) | compare |
| b1323 | tyrR | -1.1 | -3.2 | DNA-binding transcriptional dual regulator, tyrosine-binding (NCBI) | compare |
| b1620 | malI | -1.1 | -1.9 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4568 | ytjA | -1.1 | -1.5 | predicted protein (RefSeq) | compare |
| b1684 | sufA | -1.1 | -2.2 | iron-sulfur cluster assembly scaffold protein (NCBI) | compare |
| b3031 | yqiA | -1.1 | -4.2 | predicted esterase (NCBI) | compare |
| b1765 | ydjA | -1.1 | -0.9 | predicted oxidoreductase (NCBI) | compare |
| b2807 | ygdD | -1.1 | -3.1 | conserved inner membrane protein (NCBI) | compare |
| b3198 | kdsC | -1.1 | -1.7 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b3094 | exuR | -1.1 | -3.2 | negative regulator of exu regulon, exuT, uxaAC, and uxuB (VIMSS) | compare |
| b0740 | tolB | -1.1 | -2.2 | translocation protein TolB precursor (NCBI) | compare |
| b3641 | ttk | -1.1 | -4.7 | putative transcriptional regulator (VIMSS) | compare |
| b1928 | yedD | -1.0 | -3.3 | hypothetical protein (NCBI) | compare |
| b2808 | gcvA | -1.0 | -2.4 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b4699 | fnrS | -1.0 | -0.7 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b3472 | b3472 | -1.0 | -4.7 | orf, hypothetical protein (VIMSS) | compare |
| b0191 | yaeJ | -1.0 | -2.6 | hypothetical protein (NCBI) | compare |
| b0406 | tgt | -1.0 | -3.9 | queuine tRNA-ribosyltransferase (NCBI) | compare |
| b2378 | ddg | -1.0 | -3.6 | putative heat shock protein (VIMSS) | compare |
| b1111 | ycfQ | -1.0 | -2.3 | orf, hypothetical protein (VIMSS) | compare |
| b3644 | yicC | -1.0 | -3.8 | hypothetical protein (NCBI) | compare |
| b4407 | thiS | -1.0 | -1.6 | sulfur carrier protein ThiS (NCBI) | compare |
| b4585 | sroB | -1.0 | -1.0 | Novel sRNA, function unknown (RefSeq) | compare |
| b3026 | qseC | -1.0 | -1.7 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b3931 | hslU | -1.0 | -5.9 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b2433 | b2433 | -1.0 | -1.5 | orf, hypothetical protein (VIMSS) | compare |
| b4527 | b1354 | -1.0 | -2.7 | orf, hypothetical protein (VIMSS) | compare |
| b3813 | uvrD | -1.0 | -6.5 | DNA-dependent ATPase I and helicase II (NCBI) | compare |
| b1164 | ycgZ | -1.0 | -0.9 | hypothetical protein (NCBI) | compare |
| b0460 | hha | -1.0 | -2.2 | modulator of gene expression, with H-NS (NCBI) | compare |
| b0931 | pncB | -1.0 | -2.9 | nicotinate phosphoribosyltransferase (NCBI) | compare |
| b0550 | rusA | -1.0 | -1.9 | DLP12 prophage; endonuclease RUS (NCBI) | compare |
| b4144 | yjeI | -1.0 | -1.5 | orf, hypothetical protein (VIMSS) | compare |
| b3613 | yibP | -1.0 | -0.9 | putative membrane protein (VIMSS) | compare |
| b3839 | tatC | -1.0 | -3.8 | TatABCE protein translocation system subunit (NCBI) | compare |
| b4410 | ecnA | -1.0 | -1.2 | entericidin A membrane lipoprotein, antidote entericidin B (NCBI) | compare |
| b2445 | yffN | -1.0 | -2.3 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b4133 | cadC | -1.0 | -5.6 | DNA-binding transcriptional activator (NCBI) | compare |
| b1523 | yneG | -1.0 | -1.7 | hypothetical protein (NCBI) | compare |
| b4062 | soxS | -0.9 | -2.6 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1581 | rspA | -0.9 | -2.0 | predicted dehydratase (NCBI) | compare |
| b0339 | cynT | -0.9 | -2.8 | carbonic anhydrase (NCBI) | compare |
| b2910 | zapA | -0.9 | -2.4 | protein that localizes to the cytokinetic ring (NCBI) | compare |
| b1259 | yciG | -0.9 | -1.0 | orf, hypothetical protein (VIMSS) | compare |
| b1861 | ruvA | -0.9 | -0.8 | Holliday junction DNA helicase motor protein (NCBI) | compare |
| b1829 | htpX | -0.9 | -2.6 | heat shock protein HtpX (NCBI) | compare |
| b3131 | agaR | -0.9 | -2.4 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2061 | wzb | -0.9 | -1.7 | protein-tyrosine phosphatase (NCBI) | compare |
| b4402 | yjjY | -0.9 | -0.6 | hypothetical protein (NCBI) | compare |
| b2209 | eco | -0.9 | -1.6 | ecotin precursor (NCBI) | compare |
| b1480 | sra | -0.9 | -0.9 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b3155 | yhbQ | -0.9 | -2.5 | hypothetical protein (NCBI) | compare |
| b0721 | sdhC | -0.9 | -2.5 | succinate dehydrogenase cytochrome b556 large membrane subunit (NCBI) | compare |
| b1038 | csgF | -0.9 | -1.6 | predicted transport protein (NCBI) | compare |
| b2189 | proL | -0.9 | -1.2 | tRNA-Pro (NCBI) | compare |
| b0782 | moaB | -0.9 | -1.2 | molybdopterin biosynthesis protein B (NCBI) | compare |
| b1643 | ydhI | -0.9 | -2.9 | predicted inner membrane protein (NCBI) | compare |
| b0225 | yafQ | -0.9 | -1.9 | predicted toxin of the YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b2156 | lysP | -0.9 | -4.9 | lysine transporter (NCBI) | compare |
| b0049 | apaH | -0.9 | -1.3 | diadenosinetetraphosphatase (NCBI) | compare |
| b4431 | rprA | -0.9 | -1.3 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b1242 | ychE | -0.9 | -2.4 | predicted inner membrane protein (NCBI) | compare |
| b1482 | osmC | -0.9 | -1.4 | osmotically inducible, stress-inducible membrane protein (NCBI) | compare |
| b2553 | glnB | -0.9 | -2.2 | regulatory protein P-II for glutamine synthetase (NCBI) | compare |