Experiment set8IT070 for Pseudomonas putida KT2440

Compare to:

Adaptation in M9 media timecourse 2; day 3

200 most important genes:

  gene name fitness t score description  
PP_0293 -5.0 -3.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4994 -4.3 -3.0 conserved protein of unknown function compare
PP_5185 -4.1 -5.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1110 -4.1 -4.7 serine acetyltransferase compare
PP_5289 -4.0 -5.5 Acetylglutamate kinase compare
PP_1088 -3.9 -8.7 Argininosuccinate synthase compare
PP_1985 -3.9 -6.4 3-isopropylmalate dehydratase large subunit compare
PP_4890 -3.8 -8.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_0967 -3.7 -10.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2168 -3.7 -9.6 Transaldolase compare
PP_0290 -3.6 -9.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0966 -3.5 -11.1 Histidinol dehydrogenase compare
PP_1111 -3.4 -8.5 putative Synthetase compare
PP_5155 -3.4 -5.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0184 -3.3 -2.3 Argininosuccinate lyase compare
PP_0083 -3.3 -2.3 tryptophan synthase beta chain compare
PP_4058 -3.2 -5.7 1,4-alpha-glucan branching enzyme compare
PP_0965 -3.1 -11.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0289 -3.1 -7.9 Imidazoleglycerol-phosphate dehydratase compare
PP_2433 -3.1 -4.6 conserved protein of unknown function compare
PP_0292 -3.0 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1109 -3.0 -13.3 Transcriptional regulator, GntR family compare
PP_1898 -2.9 -2.0 MotA/TolQ/ExbB proton channel family protein compare
PP_1995 -2.9 -9.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1988 -2.9 -8.5 3-isopropylmalate dehydrogenase compare
PP_1779 -2.7 -6.2 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1778 -2.6 -4.9 Lipopolysaccharide ABC export system, permease protein compare
PP_5014 -2.5 -3.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_0691 -2.5 -2.4 Glutamate 5-kinase compare
PP_1198 -2.4 -3.2 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4909 -2.4 -5.2 phosphoserine phosphatase compare
PP_4678 -2.4 -12.1 Ketol-acid reductoisomerase compare
PP_3511 -2.4 -7.8 Branched-chain-amino-acid aminotransferase compare
PP_0422 -2.3 -6.2 Indole-3-glycerol phosphate synthase compare
PP_0417 -2.3 -14.8 Anthranilate synthase component 1 compare
PP_4723 -2.3 -2.7 Carbamoyl-phosphate synthase large chain compare
PP_0082 -2.3 -3.7 tryptophan synthase alpha chain compare
PP_4680 -2.2 -13.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4505 -2.2 -7.4 Sensor histidine kinase compare
PP_2348 -2.2 -6.4 Sensor histidine kinase compare
PP_1231 -2.2 -6.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4213 -2.2 -4.0 putative dipeptidase compare
PP_0261 -2.1 -6.8 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4724 -2.0 -1.4 Carbamoyl-phosphate synthase small chain compare
PP_0421 -2.0 -7.4 Anthranilate phosphoribosyltransferase compare
PP_5015 -2.0 -4.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0735 -2.0 -2.2 molybdopterin-synthase adenylyltransferase compare
PP_4679 -1.9 -4.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4217 -1.9 -15.4 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_5128 -1.8 -7.2 Dihydroxy-acid dehydratase compare
PP_5232 -1.7 -3.5 conserved protein of unknown function compare
PP_1079 -1.6 -5.6 Ornithine carbamoyltransferase compare
PP_t12 -1.6 -0.7 tRNA-Thr compare
PP_1176 -1.5 -1.5 conserved protein of unknown function compare
PP_1986 -1.5 -3.4 3-isopropylmalate dehydratase small subunit compare
PP_4208 -1.4 -6.7 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_4902 -1.4 -1.0 Oligoribonuclease compare
PP_4060 -1.4 -9.8 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_0291 -1.4 -3.3 conserved protein of unknown function compare
PP_4836 -1.4 -2.8 conserved exported protein of unknown function compare
PP_4342 -1.3 -2.0 flagellar synthesis regulator, putative ATPase compare
PP_5097 -1.3 -7.9 homoserine O-acetyltransferase compare
PP_0787 -1.3 -4.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1208 -1.2 -2.1 conserved protein of unknown function, SlyX family compare
PP_5241 -1.2 -3.5 DNA-binding response regulator, LuxR family compare
PP_0002 -1.2 -4.9 probable chromosome partition protein compare
PP_0909 -1.2 -5.4 conserved exported protein of unknown function compare
PP_2001 -1.2 -5.7 O-succinylhomoserine sulfhydrylase compare
PP_4069 -1.2 -3.5 conserved protein of unknown function compare
PP_0022 -1.2 -0.9 hypothetical protein compare
PP_5095 -1.1 -1.4 pyrroline-5-carboxylate reductase compare
PP_2326 -1.1 -6.0 Universal stress protein compare
PP_3376 -1.1 -4.2 putative phosphonate dehydrogenase compare
PP_5705 -1.1 -1.5 protein of unknown function compare
PP_1186 -1.1 -1.7 two component system DNA-binding transcriptional dual regulator compare
PP_4782 -1.1 -3.6 Phosphomethylpyrimidine kinase compare
PP_1876 -1.1 -3.2 putative ATP/GTP-binding protein of the AAA+ family compare
PP_5346 -1.0 -6.3 pyruvate carboxylase subunit B compare
PP_4008 -1.0 -2.8 ATP-dependent serine protease compare
PP_1025 -1.0 -5.6 2-isopropylmalate synthase compare
PP_1598 -1.0 -2.0 regulatory intramembrane protein RIP zinc protease compare
PP_2568 -1.0 -1.3 Ring-cleaving dioxygenase compare
PP_5104 -1.0 -4.4 thiazole synthase compare
PP_1233 -0.9 -3.0 sulfurtransferase compare
PP_4122 -0.9 -0.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0677 -0.9 -3.1 putative Lipoprotein compare
PP_2328 -0.9 -3.6 Phosphoadenosine phosphosulfate reductase compare
PP_5393 -0.9 -1.3 putative metal-binding chaperone compare
PP_4009 -0.9 -3.5 ATP-dependent Clp protease adapter protein ClpS compare
PP_2681 -0.9 -1.3 coenzyme PQQ synthesis protein D compare
PP_5053 -0.9 -3.4 Protein-export protein SecB compare
PP_3481 -0.9 -2.2 conserved exported protein of unknown function compare
PP_1034 -0.9 -5.3 multicopper oxidase compare
PP_4785 -0.9 -4.0 conserved exported protein of unknown function compare
PP_5098 -0.9 -3.9 methionine biosynthesis protein MetW compare
PP_5295 -0.9 -1.2 conserved protein of unknown function compare
PP_5008 -0.9 -1.9 Poly granule-associated protein compare
PP_0910 -0.9 -3.5 conserved exported protein of unknown function compare
PP_5507 -0.9 -2.1 protein of unknown function compare
PP_3946 -0.9 -1.1 HTH-type transcriptional repressor NicR compare
PP_1788 -0.9 -2.0 conserved protein of unknown function compare
PP_4355 -0.9 -1.7 flagellar export apparatus subunit compare
PP_0339 -0.8 -1.9 Pyruvate dehydrogenase E1 component compare
PP_3519 -0.8 -0.8 putative Lipoprotein compare
PP_0420 -0.8 -4.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1224 -0.8 -2.9 periplasmic subunit of the TolQRA transport system compare
PP_3241 -0.8 -0.8 conserved exported protein of unknown function compare
PP_2720 -0.8 -1.5 conserved protein of unknown function compare
PP_5090 -0.8 -1.2 putative cell division protein compare
PP_5007 -0.8 -1.8 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_1082 -0.8 -3.4 bacterioferritin compare
PP_2152 -0.8 -1.3 glycerophosphoryl diester phosphodiesterase compare
PP_2714 -0.8 -2.6 Sensor histidine kinase compare
PP_0001 -0.8 -0.8 probable chromosome-partitioning protein compare
PP_0593 -0.8 -0.6 putative ribosome-binding factor compare
PP_4999 -0.8 -0.5 dihydroorotase-like protein compare
PP_0087 -0.8 -1.7 conserved exported protein of unknown function compare
PP_4982 -0.8 -2.8 putative cytochrome b561, iron-regulated compare
PP_0111 -0.7 -3.1 Electron transport protein SCO1/SenC compare
PP_1054 -0.7 -1.7 Type II secretion pathway protein XcpZ compare
PP_0040 -0.7 -2.2 hypothetical protein compare
PP_3318 -0.7 -1.4 conserved protein of unknown function compare
PP_3539 -0.7 -1.1 putative Transcriptional regulator compare
PP_4070 -0.7 -4.1 conserved protein of unknown function compare
PP_2826 -0.7 -2.8 Transcriptional regulator MexT compare
PP_0508 -0.7 -2.2 conserved exported protein of unknown function compare
PP_3926 -0.7 -1.6 short-chain dehydrogenase compare
PP_0362 -0.7 -5.6 Biotin synthase compare
PP_5331 -0.7 -3.2 Long-chain acyl-CoA thioester hydrolase compare
PP_5475 -0.7 -1.4 conserved protein of unknown function compare
PP_2031 -0.7 -1.3 conserved protein of unknown function compare
PP_2087 -0.7 -1.3 CmpX protein compare
PP_3726 -0.7 -1.0 Enoyl-CoA hydratase/isomerase family protein compare
PP_4660 -0.7 -1.6 Transcriptional regulator, LysR family compare
PP_0951 -0.7 -3.2 Ribosome hibernation promoting factor compare
PP_2640 -0.7 -2.3 Acetyltransferase, GNAT family compare
PP_4922 -0.7 -5.0 Phosphomethylpyrimidine synthase compare
PP_4004 -0.7 -1.1 DNA translocase FtsK compare
PP_5042 -0.7 -2.4 conserved protein of unknown function compare
PP_4882 -0.7 -4.4 Iron ABC transporter, permease protein compare
PP_2327 -0.7 -2.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2976 -0.7 -1.3 putative transposase compare
PP_0908 -0.7 -3.0 conserved exported protein of unknown function compare
PP_5347 -0.7 -4.8 pyruvate carboxylase subunit A compare
PP_2820 -0.7 -1.2 HTH-type transcriptional regulator nfxB compare
PP_5621 -0.6 -1.1 protein of unknown function compare
PP_1415 -0.6 -2.6 putative membrane associated enzyme subunit compare
PP_0409 -0.6 -3.3 Sensory box histidine kinase compare
PP_4838 -0.6 -4.6 Outer membrane copper receptor OprC compare
PP_4214 -0.6 -1.7 pyoverdine biosynthesis related protein compare
PP_3043 -0.6 -0.8 conserved protein of unknown function compare
PP_2511 -0.6 -2.0 conserved protein of unknown function compare
PP_5667 -0.6 -1.8 putative microcin B17-like-processing protein, McbC family compare
PP_4268 -0.6 -0.6 nucleoid-associated broad specificity regulator compare
PP_5348 -0.6 -4.3 Transcriptional regulator, LysR family compare
PP_2928 -0.6 -3.5 Saccharopine dehydrogenase compare
PP_2345 -0.6 -1.2 conserved exported protein of unknown function compare
PP_3662 -0.6 -3.5 conserved protein of unknown function compare
PP_3648 -0.6 -2.6 Carboxymuconolactone decarboxylase family protein compare
PP_3804 -0.6 -2.1 conserved exported protein of unknown function compare
PP_4262 -0.6 -1.3 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5247 -0.6 -2.4 conserved protein of unknown function compare
PP_4797 -0.6 -1.6 conserved protein of unknown function compare
PP_5311 -0.6 -3.6 putative signal transduction protein compare
PP_4696 -0.6 -1.5 Nitrogen regulation protein NR(I) compare
PP_2889 -0.6 -2.7 putative Transmembrane regulator PrtR compare
PP_5294 -0.6 -2.5 Ribonuclease PH compare
PP_4059 -0.6 -4.7 fused trehalose synthase B/maltokinase compare
PP_1926 -0.6 -1.3 putative phosphotyrosine-protein phosphatase compare
PP_5558 -0.6 -1.4 putative transcriptional xre family of phage origin compare
PP_3833 -0.6 -2.1 Response regulator compare
PP_1013 -0.6 -3.0 Sensor histidine kinase compare
PP_0782 -0.6 -1.9 conserved protein of unknown function compare
PP_5456 -0.6 -1.1 conserved protein of unknown function compare
PP_0351 -0.6 -2.7 putative Transmembrane sensor protein compare
PP_1347 -0.6 -2.7 Glutathione S-transferase family protein compare
PP_4848 -0.6 -1.8 Curved DNA-binding protein compare
PP_3999 -0.6 -2.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0195 -0.6 -1.0 conserved protein of unknown function compare
PP_5110 -0.6 -1.3 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_3064 -0.6 -1.5 Phage tail protein compare
PP_5640 -0.6 -1.9 conserved protein of unknown function compare
PP_2028 -0.6 -1.3 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_3102 -0.6 -1.9 conserved protein of unknown function compare
PP_4881 -0.6 -4.3 putative Iron ABC transporter, periplasmic iron-binding protein compare
PP_1508 -0.6 -2.1 conserved protein of unknown function compare
PP_4045 -0.6 -1.7 conserved protein of unknown function compare
PP_0913 -0.5 -2.4 conserved exported protein of unknown function compare
PP_4897 -0.5 -2.6 N-acetylmuramoyl-L-alanine amidase compare
PP_1410 -0.5 -1.2 conserved protein of unknown function compare
PP_2390 -0.5 -2.9 Transcriptional regulator, LysR family compare
PP_5661 -0.5 -1.4 putative lipoprotein compare
PP_3380 -0.5 -2.0 2-ketogluconate utilization repressor compare
PP_3797 -0.5 -2.7 conserved membrane protein of unknown function compare
PP_1770 -0.5 -1.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_1012 -0.5 -2.2 DNA-binding response regulator compare
PP_1078 -0.5 -2.7 putative ABC transporter, ATP-binding protein compare
PP_1468 -0.5 -0.6 Tyrosine recombinase XerD compare
PP_0666 -0.5 -1.7 conserved protein of unknown function compare
PP_2389 -0.5 -2.3 conserved protein of unknown function compare


Specific Phenotypes

For 2 genes in this experiment