Experiment set8IT070 for Agrobacterium fabrum C58

Compare to:

Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

200 most important genes:

  gene name fitness t score description  
Atu5513 -3.4 -2.4 cold shock protein compare
Atu5540 -2.9 -1.1 hypothetical protein compare
Atu2728 -2.7 -6.9 beta (1-->2) glucan export ATP-binding protein compare
Atu0434 -2.6 -3.7 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4773 -2.2 -2.2 two component response regulator compare
Atu6098 -2.1 -0.8 transcriptional regulator, HTH family compare
Atu2522 -1.5 -9.0 agrobacterium chromosomal virulence protein B compare
Atu1359 -1.5 -1.3 dnaK deletion suppressor protein compare
Atu3009 -1.4 -1.8 exopolysaccharide production protein compare
Atu0190 -1.3 -7.2 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1470 -1.3 -1.7 Camphor resistance protein compare
Atu5489 -1.3 -2.0 hypothetical protein compare
Atu0971 -1.2 -2.4 two component sensor kinase compare
Atu3008 -1.2 -1.6 hypothetical protein compare
Atu0846 -1.1 -2.9 transcriptional regulator, MarR family compare
Atu6153 -1.1 -2.6 conserved hypothetical protein compare
Atu1774 -1.1 -5.9 ABC transporter, substrate binding protein (peptide) compare
Atu3012 -1.1 -2.0 hypothetical protein compare
Atu5125 -1.0 -2.9 GntR family transcriptional regulator compare
Atu6027 -1.0 -3.1 ABC transporter, substrate binding protein (nopaline) compare
Atu2249 -1.0 -1.1 hypothetical protein compare
Atu1028 -1.0 -2.1 hypothetical protein compare
Atu0999 -1.0 -4.4 magnesium transport protein compare
Atu0953 -1.0 -0.6 hypothetical protein compare
Atu3011 -1.0 -3.7 ArsR family transcriptional regulator compare
Atu3017 -1.0 -1.6 phosphoglyceromutase compare
Atu1030 -1.0 -1.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3763 -1.0 -1.5 hypothetical protein compare
Atu6045 -0.9 -0.9 replication protein C compare
Atu0986 -0.9 -1.3 hypothetical protein compare
Atu5061 -0.9 -2.5 glycerophosphoryl diester phosphodiesterase compare
Atu4527 -0.9 -1.7 hypothetical protein compare
Atu5186 -0.9 -1.2 hypothetical protein compare
Atu0141 -0.9 -1.5 cytochrome O ubiquinol oxidase subunit I compare
Atu5430 -0.9 -0.6 hypothetical protein compare
Atu0784 -0.9 -1.5 hypothetical protein compare
Atu4711 -0.9 -3.3 two component sensor kinase compare
Atu0723 -0.8 -1.6 FAD dependent oxidoreductase compare
Atu1232 -0.8 -1.8 hypothetical protein compare
Atu3030 -0.8 -3.5 hypothetical protein compare
Atu4144 -0.8 -1.0 hypothetical protein compare
Atu0031 -0.8 -0.9 PTS system, IIA component compare
Atu0941 -0.8 -0.8 hypothetical protein compare
Atu2464 -0.8 -2.0 formyltetrahydrofolate deformylase compare
Atu0346 -0.8 -2.2 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu6165 -0.8 -0.7 hypothetical protein compare
Atu3001 -0.8 -2.9 hypothetical protein compare
Atu2787 -0.8 -1.0 hypothetical protein compare
Atu5468 -0.8 -1.3 hypothetical protein compare
Atu1099 -0.8 -4.4 hypothetical protein compare
Atu0189 -0.7 -1.6 ABC transporter, membrane spanning protein (peptide) compare
Atu5115 -0.7 -0.7 hypothetical protein compare
Atu3032 -0.7 -2.7 hypothetical protein compare
Atu2057 -0.7 -2.2 DNA helicase II compare
Atu4894 -0.7 -3.8 transposase compare
Atu5471 -0.7 -1.8 hypothetical protein compare
Atu6146 -0.7 -2.6 conserved hypothetical protein compare
Atu2439 -0.7 -1.2 hypothetical protein compare
Atu4881 -0.7 -3.3 hypothetical protein compare
Atu1836 -0.7 -1.0 hypothetical protein compare
Atu4471 -0.7 -3.8 ABC transporter substrate-binding protein compare
Atu1810 -0.7 -0.9 hypothetical protein compare
Atu0815 -0.7 -1.1 hypothetical protein compare
Atu6036 -0.7 -0.4 entry-exclusion protein compare
Atu6058 -0.7 -2.5 ABC transporter, nucleotide binding/ATPase protein (nitrate/sulfonates) compare
Atu3021 -0.7 -4.4 sugar ABC transporter ATPase compare
Atu4872 -0.6 -4.6 LysR family transcriptional regulator compare
Atu4161 -0.6 -1.4 hypothetical protein compare
Atu6020 -0.6 -1.9 conserved hypothetical protein compare
Atu6119 -0.6 -1.7 conserved hypothetical protein compare
Atu4866 -0.6 -4.1 hypothetical protein compare
Atu3757 -0.6 -1.6 hypothetical protein compare
Atu0142 -0.6 -1.2 cytochrome o ubiquinol oxidase subunit II compare
Atu3015 -0.6 -3.7 hypothetical protein compare
Atu4865 -0.6 -3.8 oxidoreductase compare
Atu4873 -0.6 -3.6 TetR family transcriptional regulator compare
Atu5043 -0.6 -1.4 hypothetical protein compare
Atu3019 -0.6 -3.3 hypothetical protein compare
Atu4869 -0.6 -2.5 hypothetical protein compare
Atu3014 -0.6 -1.5 hypothetical protein compare
Atu4093 -0.6 -2.0 hypothetical protein compare
Atu4889 -0.6 -3.6 hypothetical protein compare
Atu2028 -0.6 -1.3 transcriptional regulator, ArsR family compare
Atu0681 -0.6 -1.8 hypothetical protein compare
Atu4897 -0.6 -1.1 hypothetical protein compare
Atu2531 -0.6 -2.6 actinorhodin polyketide dimerase compare
Atu1679 -0.6 -1.5 peptidyl prolyl cis-trans isomerase compare
Atu4879 -0.6 -2.6 hypothetical protein compare
Atu3461 -0.6 -1.5 GntR family transcriptional regulator compare
Atu5169 -0.5 -1.3 type IV secretion protein AvhB8 compare
Atu4892 -0.5 -3.9 hypothetical protein compare
Atu4779 -0.5 -1.6 hypothetical protein compare
Atu8035 -0.5 -1.0 hypothetical protein compare
Atu1439 -0.5 -1.5 hypothetical protein compare
Atu4838 -0.5 -2.4 outer membrane lipoprotein compare
Atu2634 -0.5 -1.4 hypothetical protein compare
Atu3040 -0.5 -3.5 hypothetical protein compare
Atu3020 -0.5 -3.8 GntR family transcriptional regulator compare
Atu4470 -0.5 -2.1 iron ABC transporter ATPase compare
Atu5517 -0.5 -0.7 hypothetical protein compare
Atu3016 -0.5 -2.7 phosphoglyceromutase compare
Atu1731 -0.5 -2.6 xanthine-guanine phosphoribosyltransferase compare
Atu4468 -0.5 -2.8 iron transport ABC transporter permease compare
Atu8039 -0.5 -1.6 hypothetical protein compare
Atu1364 -0.5 -2.8 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3029 -0.5 -3.7 glucarate dehydratase compare
Atu3721 -0.5 -0.9 hypothetical protein compare
Atu3022 -0.5 -3.0 sugar ABC transporter permease compare
Atu2083 -0.5 -1.5 DNA repair protein RecN compare
Atu3006 -0.5 -2.4 hypothetical protein compare
Atu3083 -0.5 -2.1 hypothetical protein compare
Atu4887 -0.5 -3.0 hypothetical protein compare
Atu5028 -0.5 -1.1 IS426 transposase compare
Atu3010 -0.5 -3.5 hypothetical protein compare
Atu0749 -0.5 -1.4 biotin synthesis BioY protein compare
Atu2117 -0.5 -2.9 lytic murein transglycosylase compare
Atu0340 -0.5 -0.9 SAM dependent methyltransferase compare
Atu0119 -0.5 -0.7 hypothetical protein compare
Atu3024 -0.5 -3.3 sugar ABC transporter permease compare
Atu3567 -0.5 -1.3 hypothetical protein compare
Atu3794 -0.5 -3.2 FadR family transcriptional regulator compare
Atu1447 -0.5 -1.1 two component sensor kinase compare
Atu0842 -0.5 -0.7 hypothetical protein compare
Atu0554 -0.5 -2.2 flagellar basal-body rod protein compare
Atu8082 -0.5 -0.7 hypothetical protein compare
Atu2441 -0.5 -1.7 RNA methylase compare
Atu5519 -0.5 -1.5 hypothetical protein compare
Atu3047 -0.5 -2.6 oligopeptide ABC transporter permease compare
Atu4418 -0.5 -2.1 glutaryl-CoA dehydrogenase compare
Atu0977 -0.5 -1.6 serine protease DO-like protease compare
Atu6197 -0.5 -1.3 agrocinopine phosphodiesterase compare
Atu6112 -0.5 -1.2 conserved hypothetical protein compare
Atu3013 -0.5 -1.8 hypothetical protein compare
Atu0544 -0.5 -0.9 hypothetical protein compare
Atu8162 -0.5 -0.6 hypothetical protein compare
Atu3036 -0.5 -2.2 dipeptide ABC transporter permease compare
Atu4870 -0.4 -3.0 NADP-dependent quinone oxidoreductase compare
Atu3028 -0.4 -2.7 hypothetical protein compare
Atu4893 -0.4 -2.3 hypothetical protein compare
Atu6051 -0.4 -2.3 conserved hypothetical protein compare
Atu0997 -0.4 -1.7 hypothetical protein compare
Atu3604 -0.4 -1.2 hypoxanthine phosphoribosyltransferase compare
Atu2768 -0.4 -1.6 hypothetical protein compare
Atu3767 -0.4 -1.8 diguanylate cyclase compare
Atu0698 -0.4 -1.5 hypothetical protein compare
Atu4876 -0.4 -3.1 oxidoreductase compare
Atu3071 -0.4 -1.5 hypothetical protein compare
Atu8202 -0.4 -1.5 hypothetical protein compare
Atu3668 -0.4 -1.3 siderophore biosynthesis protein compare
Atu1527 -0.4 -1.9 nitrogen fixation protein FixS compare
Atu4874 -0.4 -2.9 hypothetical protein compare
Atu1737 -0.4 -1.4 hypothetical protein compare
Atu0280 -0.4 -0.8 hypothetical protein compare
Atu8093 -0.4 -2.2 hypothetical protein compare
Atu3665 -0.4 -3.1 short-chain dehydrogenase compare
Atu3759 -0.4 -0.8 hypothetical protein compare
Atu0036 -0.4 -0.9 hypothetical protein compare
Atu6179 -0.4 -1.3 virA/G regulated protein compare
Atu3315 -0.4 -1.2 UDP-glucose 4-epimerase compare
Atu4877 -0.4 -2.5 short-chain dehydrogenase compare
Atu4888 -0.4 -2.4 hypothetical protein compare
Atu1744 -0.4 -2.3 nitroreductase family protein compare
Atu5450 -0.4 -1.4 hypothetical protein compare
Atu4772 -0.4 -1.6 hypothetical protein compare
Atu1666 -0.4 -2.7 hypothetical protein compare
Atu6150 -0.4 -2.3 P-450 monooxygenase compare
Atu4840 -0.4 -2.7 hypothetical protein compare
Atu0558 -0.4 -2.5 flagellar basal body rod protein compare
Atu0188 -0.4 -1.3 ABC transporter, membrane spanning protein (peptide) compare
Atu2746 -0.4 -1.5 hypothetical protein compare
Atu1518 -0.4 -1.7 transcriptional regulator, Fur family compare
Atu6186 -0.4 -1.1 virA/G regulated protein compare
Atu3025 -0.4 -3.5 oligo alginate lyase compare
Atu2776 -0.4 -2.2 hypothetical protein compare
Atu2573 -0.4 -1.8 hypothetical protein compare
Atu1508 -0.4 -1.6 hypothetical protein compare
Atu2511 -0.4 -2.6 D-alanine aminotransferase compare
Atu3033 -0.4 -3.1 hypothetical protein compare
Atu1264 -0.4 -2.3 hypothetical protein compare
Atu2344 -0.4 -1.2 lactoylglutathione lyase compare
Atu1163 -0.4 -0.6 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0762 -0.4 -0.8 hypothetical protein compare
Atu0339 -0.4 -2.0 hypothetical protein compare
Atu5449 -0.4 -1.2 heat-shock protein compare
Atu2052 -0.4 -1.9 hypothetical protein compare
Atu5527 -0.4 -1.5 NADH-dependent FMN reductase compare
Atu3027 -0.4 -2.7 dehydrogenase compare
Atu0538 -0.4 -1.6 hypothetical protein compare
Atu5116 -0.4 -1.6 transcriptional regulator protein compare
Atu3023 -0.4 -2.7 sugar ABC transporter permease compare
Atu8047 -0.4 -0.9 hypothetical protein compare
Atu5501 -0.4 -0.5 hypothetical protein compare
Atu6114 -0.4 -0.7 hypothetical protein compare
Atu2616 -0.4 -2.6 hypothetical protein compare
Atu1812 -0.4 -1.3 hypothetical protein compare
Atu2251 -0.4 -2.1 NTP pyrophosphohydrolase, MutT family compare
Atu2649 -0.4 -1.3 hypothetical protein compare
Atu4836 -0.4 -2.6 hypothetical protein compare
Atu3674 -0.4 -0.9 hypothetical protein compare
Atu0788 -0.4 -1.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in supernatant experiments

For supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered across organisms