Experiment set8IT068 for Agrobacterium fabrum C58

Compare to:

Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

200 most important genes:

  gene name fitness t score description  
Atu2728 -2.5 -7.0 beta (1-->2) glucan export ATP-binding protein compare
Atu0434 -2.4 -3.5 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0723 -2.3 -3.1 FAD dependent oxidoreductase compare
Atu0769 -2.1 -2.8 protoheme IX farnesyltransferase compare
Atu6098 -1.8 -0.7 transcriptional regulator, HTH family compare
Atu6165 -1.7 -0.9 hypothetical protein compare
Atu3763 -1.7 -2.4 hypothetical protein compare
Atu1446 -1.6 -2.1 two component response regulator compare
Atu2522 -1.6 -10.4 agrobacterium chromosomal virulence protein B compare
Atu0190 -1.5 -8.1 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1359 -1.5 -1.4 dnaK deletion suppressor protein compare
Atu4773 -1.4 -1.5 two component response regulator compare
Atu1149 -1.3 -2.2 adenylate cyclase compare
Atu0188 -1.3 -3.3 ABC transporter, membrane spanning protein (peptide) compare
Atu3121 -1.3 -1.6 cold shock protein compare
Atu0031 -1.3 -1.3 PTS system, IIA component compare
Atu1163 -1.3 -2.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu4072 -1.3 -1.7 nodulation protein N compare
Atu0189 -1.2 -3.6 ABC transporter, membrane spanning protein (peptide) compare
Atu0999 -1.2 -7.0 magnesium transport protein compare
Atu6036 -1.2 -0.7 entry-exclusion protein compare
Atu1774 -1.2 -5.8 ABC transporter, substrate binding protein (peptide) compare
Atu3008 -1.1 -1.6 hypothetical protein compare
Atu0346 -1.1 -3.0 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu5164 -1.1 -0.6 type IV secretion protein AvhB3 compare
Atu3011 -1.1 -4.3 ArsR family transcriptional regulator compare
Atu8162 -1.1 -1.8 hypothetical protein compare
Atu2286 -1.1 -1.9 hypothetical protein compare
Atu2052 -1.0 -4.4 hypothetical protein compare
Atu3730 -1.0 -1.7 hypothetical protein compare
Atu4711 -1.0 -4.4 two component sensor kinase compare
Atu1354 -1.0 -1.2 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu1302 -1.0 -1.3 hypothetical protein compare
Atu2442 -1.0 -1.5 hypothetical protein compare
Atu3012 -1.0 -2.2 hypothetical protein compare
Atu2729 -0.9 -1.8 hypothetical protein compare
Atu5515 -0.9 -3.0 hypothetical protein compare
Atu4873 -0.9 -5.5 TetR family transcriptional regulator compare
Atu1503 -0.9 -1.2 hypothetical protein compare
Atu1182 -0.9 -1.0 hypothetical protein compare
Atu5046 -0.9 -1.7 hypothetical protein compare
Atu4317 -0.8 -3.0 TetR family transcriptional regulator compare
Atu1225 -0.8 -1.7 hypothetical protein compare
Atu1099 -0.8 -5.0 hypothetical protein compare
Atu6045 -0.8 -0.7 replication protein C compare
Atu8018 -0.8 -0.7 hypothetical protein compare
Atu0842 -0.8 -1.8 hypothetical protein compare
Atu0784 -0.8 -2.5 hypothetical protein compare
Atu4896 -0.8 -2.2 acetyltransferase compare
Atu5107 -0.8 -1.3 hypothetical protein compare
Atu5034 -0.8 -1.1 hypothetical protein compare
Atu1844 -0.8 -1.4 Phosphoribosylformylglycinamidine synthetase compare
Atu3006 -0.8 -3.9 hypothetical protein compare
Atu5169 -0.8 -1.7 type IV secretion protein AvhB8 compare
Atu6169 -0.8 -2.4 component of type IV secretion system compare
Atu0167 -0.8 -3.5 transcriptional regulator, AraC family compare
Atu0977 -0.8 -2.5 serine protease DO-like protease compare
Atu3794 -0.8 -4.3 FadR family transcriptional regulator compare
Atu3018 -0.7 -2.7 hypothetical protein compare
Atu0280 -0.7 -1.9 hypothetical protein compare
Atu1364 -0.7 -3.0 ATP-dependent Clp protease, ATP-binding subunit compare
Atu8053 -0.7 -0.9 hypothetical protein compare
Atu1566 -0.7 -1.0 hypothetical protein compare
Atu4881 -0.7 -2.9 hypothetical protein compare
Atu0580 -0.7 -2.6 flagellar biosynthetic protein compare
Atu3019 -0.7 -4.6 hypothetical protein compare
Atu4865 -0.7 -5.8 oxidoreductase compare
Atu8202 -0.7 -2.5 hypothetical protein compare
Atu4882 -0.7 -2.0 hypothetical protein compare
Atu5427 -0.7 -1.7 hypothetical protein compare
Atu4876 -0.7 -5.2 oxidoreductase compare
Atu3052 -0.7 -2.6 MarR family transcriptional regulator compare
Atu6129 -0.7 -2.8 conjugal transfer protein compare
Atu2432 -0.7 -1.6 hypothetical protein compare
Atu8096 -0.7 -1.4 hypothetical protein compare
Atu3423 -0.7 -1.5 hypothetical protein compare
Atu3021 -0.7 -3.9 sugar ABC transporter ATPase compare
Atu0400 -0.7 -2.1 orotate phosphoribosyltransferase compare
Atu5493 -0.7 -1.9 hypothetical protein compare
Atu4470 -0.7 -3.1 iron ABC transporter ATPase compare
Atu4893 -0.7 -4.4 hypothetical protein compare
Atu4856 -0.7 -4.3 nucleotidyltransferase compare
Atu0142 -0.7 -1.3 cytochrome o ubiquinol oxidase subunit II compare
Atu4890 -0.7 -1.7 IS426 transposase compare
Atu3009 -0.7 -1.2 exopolysaccharide production protein compare
Atu1904 -0.7 -1.3 transcriptional regulator compare
Atu1076 -0.7 -2.9 colicin V production protein compare
Atu4869 -0.7 -2.3 hypothetical protein compare
Atu4868 -0.7 -4.8 oxidoreductase compare
Atu3036 -0.7 -2.6 dipeptide ABC transporter permease compare
Atu1030 -0.6 -0.7 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4860 -0.6 -3.3 hypothetical protein compare
Atu6040 -0.6 -1.3 conjugal transfer protein compare
Atu0025 -0.6 -1.1 hypothetical protein compare
Atu3999 -0.6 -1.5 dithiobiotin synthetase compare
Atu8088 -0.6 -1.5 hypothetical protein compare
Atu0533 -0.6 -2.5 putative inhibitor of septum formation compare
Atu5504 -0.6 -1.6 hypothetical protein compare
Atu3037 -0.6 -3.9 dipeptide ABC transporter permease compare
Atu2317 -0.6 -2.4 hypothetical protein compare
Atu4894 -0.6 -4.4 transposase compare
Atu1447 -0.6 -2.1 two component sensor kinase compare
Atu4878 -0.6 -2.3 hypothetical protein compare
Atu0972 -0.6 -2.6 lipA protein compare
Atu6159 -0.6 -1.3 hypothetical protein compare
Atu8099 -0.6 -1.0 hypothetical protein compare
Atu4892 -0.6 -4.6 hypothetical protein compare
Atu3025 -0.6 -4.9 oligo alginate lyase compare
Atu2790 -0.6 -1.5 3-isopropylmalate dehydratase, small subunit compare
Atu5142 -0.6 -0.6 hypothetical protein compare
Atu3014 -0.6 -1.0 hypothetical protein compare
Atu4471 -0.6 -3.9 ABC transporter substrate-binding protein compare
Atu5437 -0.6 -1.9 hypothetical protein compare
Atu1484 -0.6 -2.1 transcriptional regulator compare
Atu5109 -0.6 -1.3 conjugal transfer protein compare
Atu4888 -0.6 -2.7 hypothetical protein compare
Atu5080 -0.6 -2.2 ABC transporter membrane spanning protein (sugar) compare
Atu4870 -0.6 -3.6 NADP-dependent quinone oxidoreductase compare
Atu1110 -0.6 -1.5 cytosol aminopeptidase compare
Atu3040 -0.6 -4.3 hypothetical protein compare
Atu5501 -0.6 -0.9 hypothetical protein compare
Atu3047 -0.6 -3.3 oligopeptide ABC transporter permease compare
Atu3024 -0.6 -4.5 sugar ABC transporter permease compare
Atu3016 -0.6 -3.2 phosphoglyceromutase compare
Atu1845 -0.6 -1.9 phosphoribosylformylglycinamidine synthase I compare
Atu5545 -0.6 -1.6 hypothetical protein compare
Atu1333 -0.6 -1.7 outer membrane protein compare
Atu1736 -0.6 -3.0 manganese transport protein compare
Atu4857 -0.6 -3.3 mobilization protein C compare
Atu4879 -0.6 -2.9 hypothetical protein compare
Atu2289 -0.6 -4.6 anthranilate synthase component I and II compare
Atu3029 -0.6 -3.7 glucarate dehydratase compare
Atu4846 -0.6 -4.5 hypothetical protein compare
Atu2827 -0.6 -1.8 hypothetical protein compare
Atu3791 -0.6 -3.8 L-asparaginase compare
Atu5475 -0.6 -1.0 hypothetical protein compare
Atu3496 -0.6 -2.0 hypothetical protein compare
Atu1588 -0.6 -3.6 homoserine dehydrogenase compare
Atu3027 -0.6 -4.3 dehydrogenase compare
Atu2163 -0.5 -0.8 hypothetical protein compare
Atu4418 -0.5 -2.5 glutaryl-CoA dehydrogenase compare
Atu3010 -0.5 -3.6 hypothetical protein compare
Atu2710 -0.5 -2.7 hypothetical protein compare
Atu4843 -0.5 -3.8 sugar ABC transporter ATPase compare
Atu1291 -0.5 -0.8 hypothetical protein compare
Atu5028 -0.5 -1.0 IS426 transposase compare
Atu0971 -0.5 -1.5 two component sensor kinase compare
Atu4835 -0.5 -4.0 glucose-6-phosphate 1-dehydrogenase compare
Atu4859 -0.5 -3.9 hypothetical protein compare
Atu3023 -0.5 -4.0 sugar ABC transporter permease compare
Atu4889 -0.5 -2.7 hypothetical protein compare
Atu6133 -0.5 -1.3 conserved hypothetical protein compare
Atu4468 -0.5 -2.9 iron transport ABC transporter permease compare
Atu3031 -0.5 -1.1 hypothetical protein compare
Atu4867 -0.5 -3.6 hypothetical protein compare
Atu5047 -0.5 -1.3 hypothetical protein compare
Atu1592 -0.5 -2.5 hypothetical protein compare
Atu8055 -0.5 -1.2 hypothetical protein compare
Atu3043 -0.5 -3.8 hydantoinase beta subunit-like protein compare
Atu5117 -0.5 -2.4 hypothetical protein compare
Atu0026 -0.5 -0.6 hypothetical protein compare
Atu3032 -0.5 -2.4 hypothetical protein compare
Atu4215 -0.5 -2.1 cell division protein compare
Atu1838 -0.5 -2.3 ABC transporter, substrate binding protein (amino acid) compare
Atu3051 -0.5 -3.4 agropine synthesis reductase compare
Atu2349 -0.5 -1.1 hypothetical protein compare
Atu1141 -0.5 -2.3 Phosphoribosylglycinamide synthetase compare
Atu6146 -0.5 -1.8 conserved hypothetical protein compare
Atu3033 -0.5 -2.9 hypothetical protein compare
Atu5091 -0.5 -2.1 Curdlan synthesis protein compare
Atu0768 -0.5 -3.3 cytochrome-c oxidase chain I compare
Atu3775 -0.5 -0.9 hypothetical protein compare
Atu1685 -0.5 -0.6 hypothetical protein compare
Atu3728 -0.5 -2.0 hypothetical protein compare
Atu3020 -0.5 -3.0 GntR family transcriptional regulator compare
Atu0846 -0.5 -1.3 transcriptional regulator, MarR family compare
Atu4880 -0.5 -3.5 AraC family transcriptional regulator compare
Atu0585 -0.5 -1.7 hypothetical protein compare
Atu0303 -0.5 -1.4 hypothetical protein compare
Atu4875 -0.5 -2.7 hypothetical protein compare
Atu4068 -0.5 -1.6 sarcosine oxidase delta subunit compare
Atu3001 -0.5 -1.4 hypothetical protein compare
Atu3013 -0.5 -2.8 hypothetical protein compare
Atu0859 -0.5 -1.6 hypothetical protein compare
Atu3028 -0.5 -2.4 hypothetical protein compare
Atu0422 -0.5 -0.8 ABC transporter, membrane spanning protein compare
Atu0184 -0.5 -0.7 glucokinase compare
Atu3034 -0.5 -2.3 ROK family transcriptional regulator compare
Atu4845 -0.5 -3.7 sugar ABC transporter permease compare
Atu4897 -0.5 -1.0 hypothetical protein compare
Atu2083 -0.5 -1.4 DNA repair protein RecN compare
Atu6113 -0.5 -1.3 conserved hypothetical protein compare
Atu4887 -0.5 -2.1 hypothetical protein compare
Atu5494 -0.5 -1.4 hypothetical protein compare
Atu4874 -0.5 -3.6 hypothetical protein compare
Atu8156 -0.5 -1.7 hypothetical protein compare
Atu4842 -0.5 -3.9 sugar ABC transporter substrate-binding protein compare
Atu6117 -0.5 -1.6 NTP pyrophosphohydrolase, MutT family compare
Atu4862 -0.5 -3.7 IS21 family transposase compare
Atu3160 -0.5 -1.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in supernatant experiments

For supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered across organisms