Experiment set8IT062 for Agrobacterium fabrum C58

Compare to:

R2A with Vogels_fungal_media 0.8X

200 most important genes:

  gene name fitness t score description  
Atu4616 -4.2 -3.7 dTDP-4-dehydrorhamnose reductase compare
Atu0999 -3.6 -13.3 magnesium transport protein compare
Atu0400 -3.1 -5.4 orotate phosphoribosyltransferase compare
Atu1844 -2.8 -5.4 Phosphoribosylformylglycinamidine synthetase compare
Atu0017 -2.8 -5.3 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3754 -2.5 -5.1 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1687 -2.2 -7.9 anthranilate phosphoribosyltransferase compare
Atu1308 -2.2 -5.0 aspartate carbamoyl transferase catalytic subunit compare
Atu2289 -2.2 -13.3 anthranilate synthase component I and II compare
Atu1688 -2.2 -7.9 indole-3-glycerol-phosphate synthase compare
Atu1685 -2.1 -1.8 hypothetical protein compare
Atu1845 -2.1 -6.5 phosphoribosylformylglycinamidine synthase I compare
Atu0298 -2.1 -6.3 orotidine 5 compare
Atu0486 -2.0 -6.0 dihydroorotate dehydrogenase compare
Atu1850 -2.0 -5.0 phosphoribosylformylglycinamidine synthetase II compare
Atu0399 -2.0 -5.7 dihydroorotase compare
Atu1307 -1.9 -4.2 dihydroorotase compare
Atu0039 -1.9 -3.4 imidazoleglycerol-phosphate synthase cyclase compare
Atu3468 -1.8 -1.2 hypothetical protein compare
Atu2125 -1.8 -3.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu5540 -1.6 -1.2 hypothetical protein compare
Atu3755 -1.6 -5.7 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu4317 -1.6 -4.5 TetR family transcriptional regulator compare
Atu1446 -1.5 -1.7 two component response regulator compare
Atu0434 -1.5 -2.6 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu5430 -1.4 -1.3 hypothetical protein compare
Atu0842 -1.4 -2.4 hypothetical protein compare
Atu1141 -1.3 -4.0 Phosphoribosylglycinamide synthetase compare
Atu1075 -1.3 -6.8 amidophosphoribosyltransferase compare
Atu4773 -1.3 -1.5 two component response regulator compare
Atu0647 -1.3 -4.4 phosphoribosylamine--glycine ligase compare
Atu1457 -1.2 -3.1 hypothetical protein compare
Atu6165 -1.2 -1.6 hypothetical protein compare
Atu1686 -1.2 -8.7 peptidyl-prolyl cis-trans isomerse D compare
Atu3469 -1.2 -2.4 phosphoglyceromutase compare
Atu1219 -1.1 -1.3 hypothetical protein compare
Atu3707 -1.1 -3.5 phosphoserine aminotransferase compare
Atu1589 -1.1 -4.4 aminotransferase, class I compare
Atu3461 -1.1 -1.9 GntR family transcriptional regulator compare
Atu1021 -1.0 -2.7 outer membrane protein compare
Atu2183 -1.0 -5.5 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0040 -1.0 -1.3 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1874 -1.0 -2.6 RecA protein compare
Atu0141 -1.0 -1.3 cytochrome O ubiquinol oxidase subunit I compare
Atu0041 -1.0 -1.6 glutamine amidotransferase compare
Atu6189 -1.0 -0.9 protein secretion chaperone compare
Atu2548 -1.0 -7.0 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu5513 -1.0 -1.8 cold shock protein compare
Atu2728 -1.0 -4.3 beta (1-->2) glucan export ATP-binding protein compare
Atu2442 -0.9 -2.8 hypothetical protein compare
Atu2832 -0.9 -3.0 tRNA modification GTPase compare
Atu1140 -0.9 -2.7 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu6036 -0.9 -0.7 entry-exclusion protein compare
Atu0678 -0.9 -4.3 histidyl-tRNA synthetase compare
Atu4072 -0.9 -1.8 nodulation protein N compare
Atu0142 -0.9 -1.5 cytochrome o ubiquinol oxidase subunit II compare
Atu1683 -0.9 -1.7 hypothetical protein compare
Atu0189 -0.9 -3.4 ABC transporter, membrane spanning protein (peptide) compare
Atu4166 -0.9 -2.2 UDP-glucose 4-epimerase compare
Atu4618 -0.8 -5.4 dTDP-rhamnose-3,5-epimerase compare
Atu3727 -0.8 -3.3 hypothetical protein compare
Atu4711 -0.8 -2.6 two component sensor kinase compare
Atu3763 -0.8 -0.8 hypothetical protein compare
Atu3017 -0.8 -1.3 phosphoglyceromutase compare
Atu3311 -0.8 -5.5 phosphomannose isomerase compare
Atu2726 -0.8 -6.4 pyruvate carboxylase compare
Atu1470 -0.8 -1.3 Camphor resistance protein compare
Atu2057 -0.7 -1.8 DNA helicase II compare
Atu0086 -0.7 -1.0 ribosome-binding factor A compare
Atu0784 -0.7 -2.3 hypothetical protein compare
Atu4614 -0.7 -3.7 glycosyltransferase compare
Atu3353 -0.7 -4.2 mannose-1-phosphate guanylyltransferase compare
Atu1737 -0.7 -1.5 hypothetical protein compare
Atu0598 -0.7 -2.8 phosphogluconate dehydratase compare
Atu0679 -0.7 -3.4 ATP phosphoribosyltransferase compare
Atu0190 -0.7 -4.1 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu5470 -0.7 -1.4 hypothetical protein compare
Atu4617 -0.7 -3.6 dTDP-D-glucose-4,6-dehydratase compare
Atu0184 -0.7 -1.4 glucokinase compare
Atu3706 -0.7 -3.6 D-3-phosphoglycerate dehydrogenase compare
Atu2640 -0.7 -2.3 hypothetical protein compare
Atu4615 -0.7 -3.9 glucose-1-phosphate thymidylyltransferase compare
Atu1701 -0.7 -1.0 protein-L-isoaspartate O-methyltransferase compare
Atu1189 -0.6 -2.5 hypothetical protein compare
Atu4143 -0.6 -1.5 hypothetical protein compare
Atu0280 -0.6 -1.9 hypothetical protein compare
Atu1028 -0.6 -1.2 hypothetical protein compare
Atu2439 -0.6 -1.2 hypothetical protein compare
Atu5146 -0.6 -1.4 hypothetical protein compare
Atu4144 -0.6 -0.9 hypothetical protein compare
Atu3491 -0.6 -1.6 hypothetical protein compare
Atu3739 -0.6 -1.8 phosphoglycerate kinase compare
Atu4840 -0.6 -2.1 hypothetical protein compare
Atu2028 -0.6 -1.0 transcriptional regulator, ArsR family compare
Atu0939 -0.6 -1.3 PemI protein compare
Atu1439 -0.6 -1.2 hypothetical protein compare
Atu0692 -0.6 -4.0 glutathione-regulated potassium-efflux system protein compare
Atu1447 -0.6 -1.5 two component sensor kinase compare
Atu1023 -0.6 -1.4 hypothetical protein compare
Atu2827 -0.6 -2.2 hypothetical protein compare
Atu3609 -0.6 -2.9 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu4075 -0.6 -2.7 glycogen synthase compare
Atu6197 -0.6 -2.1 agrocinopine phosphodiesterase compare
Atu1364 -0.6 -3.1 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0038 -0.6 -1.9 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu8056 -0.6 -0.8 hypothetical protein compare
Atu2831 -0.6 -2.9 glucose inhibited division protein A compare
Atu1793 -0.6 -3.6 phosphatidylcholine synthase compare
Atu3730 -0.6 -1.1 hypothetical protein compare
Atu4671 -0.5 -1.5 response regulator compare
Atu1677 -0.5 -2.0 queuine tRNA-ribosyltransferase compare
Atu2193 -0.5 -0.7 hypothetical protein compare
Atu2052 -0.5 -3.3 hypothetical protein compare
Atu0340 -0.5 -0.9 SAM dependent methyltransferase compare
Atu0368 -0.5 -2.8 tRNA pseudouridine synthase I compare
Atu2011 -0.5 -1.8 hypothetical protein compare
Atu0976 -0.5 -1.4 cycL protein compare
Atu4108 -0.5 -3.7 ribonuclease D compare
Atu2787 -0.5 -0.5 hypothetical protein compare
Atu3085 -0.5 -2.3 hydantoin racemase compare
Atu5045 -0.5 -1.0 hypothetical protein compare
Atu5534 -0.5 -2.5 ABC transporter nucleotide binding/ATPase compare
Atu0762 -0.5 -0.9 hypothetical protein compare
Atu0943 -0.5 -1.3 hypothetical protein compare
Atu0544 -0.5 -1.2 hypothetical protein compare
Atu3063 -0.5 -2.4 ABC transporter permease compare
Atu3604 -0.5 -1.2 hypoxanthine phosphoribosyltransferase compare
Atu1904 -0.5 -1.5 transcriptional regulator compare
Atu1629 -0.5 -0.8 transcriptional regulator, ArsR family compare
Atu1836 -0.5 -1.4 hypothetical protein compare
Atu0537 -0.5 -2.3 histidinol dehydrogenase compare
Atu3759 -0.5 -1.0 hypothetical protein compare
Atu4418 -0.5 -2.3 glutaryl-CoA dehydrogenase compare
Atu2204 -0.5 -1.2 hypothetical protein compare
Atu1774 -0.5 -2.9 ABC transporter, substrate binding protein (peptide) compare
Atu2620 -0.5 -0.9 hypothetical protein compare
Atu3794 -0.5 -2.0 FadR family transcriptional regulator compare
Atu1503 -0.5 -0.7 hypothetical protein compare
Atu1490 -0.5 -1.3 arsenate reductase compare
Atu0422 -0.5 -1.2 ABC transporter, membrane spanning protein compare
Atu0638 -0.5 -1.3 hypothetical protein compare
Atu3105 -0.5 -2.2 hypothetical protein compare
Atu3496 -0.5 -2.2 hypothetical protein compare
Atu2115 -0.5 -2.9 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu8047 -0.4 -1.5 hypothetical protein compare
Atu8053 -0.4 -1.1 hypothetical protein compare
Atu3510 -0.4 -1.0 amidohydrolase compare
Atu3506 -0.4 -1.7 hypothetical protein compare
Atu2029 -0.4 -1.3 hypothetical protein compare
Atu3522 -0.4 -3.0 glucans biosynthesis protein compare
Atu1217 -0.4 -3.2 cysteine synthase compare
Atu2040 -0.4 -1.9 phosphoserine phosphatase compare
Atu0051 -0.4 -1.6 two component sensor kinase compare
Atu1232 -0.4 -1.1 hypothetical protein compare
Atu5468 -0.4 -1.1 hypothetical protein compare
Atu5511 -0.4 -1.9 hypothetical protein compare
Atu1570 -0.4 -0.5 hypothetical protein compare
Atu1323 -0.4 -1.3 hypothetical protein compare
Atu3518 -0.4 -2.6 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu8126 -0.4 -2.7 putative phage tail protein I compare
Atu0769 -0.4 -0.9 protoheme IX farnesyltransferase compare
Atu8138 -0.4 -0.9 hypothetical protein compare
Atu3075 -0.4 -2.0 TetR family transcriptional regulator compare
Atu1469 -0.4 -1.5 hypothetical protein compare
Atu8055 -0.4 -0.8 hypothetical protein compare
Atu2025 -0.4 -2.3 transcriptional regulator compare
Atu1339 -0.4 -1.2 ribonuclease E compare
Atu1056 -0.4 -2.8 hypothetical protein compare
Atu4613 -0.4 -2.9 glycosyltransferase compare
Atu0043 -0.4 -1.3 imidazoleglycerol-phosphate dehydratase compare
Atu5057 -0.4 -0.9 hypothetical protein compare
Atu1301 -0.4 -1.2 hypothetical protein compare
Atu3090 -0.4 -2.1 DNA polymerase III subunit epsilon compare
Atu1154 -0.4 -1.6 hypothetical protein compare
Atu2367 -0.4 -1.8 hypothetical protein compare
Atu0977 -0.4 -2.3 serine protease DO-like protease compare
Atu2239 -0.4 -1.0 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu3036 -0.4 -1.6 dipeptide ABC transporter permease compare
Atu1127 -0.4 -0.8 molybdopterin converting factor small subunit compare
Atu3663 -0.4 -0.5 hypothetical protein compare
Atu1527 -0.4 -1.9 nitrogen fixation protein FixS compare
Atu0971 -0.4 -1.9 two component sensor kinase compare
Atu5061 -0.4 -1.7 glycerophosphoryl diester phosphodiesterase compare
Atu3986 -0.4 -2.4 hypothetical protein compare
Atu0556 -0.4 -1.4 hypothetical protein compare
Atu2208 -0.4 -1.7 secretion chaperone compare
Atu3065 -0.4 -2.9 sugar ABC transporter permease compare
Atu3071 -0.4 -2.2 hypothetical protein compare
Atu1588 -0.4 -2.6 homoserine dehydrogenase compare
Atu0393 -0.4 -1.8 ABC transporter, membrane spanning protein compare
Atu3315 -0.4 -1.4 UDP-glucose 4-epimerase compare
Atu3822 -0.4 -1.9 hypothetical protein compare
Atu0515 -0.4 -2.4 hypothetical protein compare
Atu4744 -0.4 -1.7 sugar ABC transporter substrate-binding protein compare
Atu5159 -0.4 -1.2 hypothetical protein compare
Atu8128 -0.4 -2.0 putative bacteriophage P2 tail protein compare
Atu3731 -0.4 -2.7 5-formyltetrahydrofolate cyclo-ligase compare
Atu4477 -0.4 -2.2 TetR family transcriptional regulator compare
Atu1435 -0.4 -1.3 hypothetical protein compare
Atu3964 -0.4 -2.1 dehydrogenase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in supernatant control:fungal media experiments

For supernatant control:fungal media Vogels_fungal_media, filtered across organisms