Experiment set8IT061 for Escherichia coli BW25113

LB Aerobic with Zinc Pyrithione 0.0000025 mM

Group: stress
Media: LB + Zinc Pyrithione (2.50E-03 mM)
Culturing: Keio_ML9a, 96 deep-well microplate; Multitron, Aerobic, at 37 (C), shaken=750 rpm
By: Hans_Hualan on 7/20/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 27 genes in this experiment

For stress Zinc Pyrithione in Escherichia coli BW25113

For stress Zinc Pyrithione across organisms

SEED Subsystems

Subsystem	#Specific
Iron acquisition in Vibrio	2
Oxidative stress	2
Pentose phosphate pathway	2
Transport of Iron	2
Adenosyl nucleosidases	1
CBSS-562.2.peg.5158 SK3 including	1
Campylobacter Iron Metabolism	1
Conserved gene cluster associated with Met-tRNA formyltransferase	1
DNA repair, bacterial	1
DNA topoisomerases, Type I, ATP-independent	1
Deoxyribose and Deoxynucleoside Catabolism	1
Folate Biosynthesis	1
Fructose utilization	1
Lactose and Galactose Uptake and Utilization	1
Mannitol Utilization	1
Nitric oxide synthase	1
Peptidyl-prolyl cis-trans isomerase	1
Potassium homeostasis	1
Purine conversions	1
RNA processing and degradation, bacterial	1
Transport of Manganese	1
Transport of Zinc	1
Type IV pilus	1
ZZ gjo need homes	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Pentose phosphate pathway
• Biosynthesis of alkaloids derived from histidine and purine
• Biosynthesis of plant hormones
• Purine metabolism
• Pyrimidine metabolism
• Glutathione metabolism
• Nicotinate and nicotinamide metabolism
• Porphyrin and chlorophyll metabolism
• Biosynthesis of phenylpropanoids
• Biosynthesis of alkaloids derived from shikimate pathway

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
purine deoxyribonucleosides degradation I	4	4	3
purine ribonucleosides degradation	6	6	4
purine deoxyribonucleosides degradation II	3	3	2
adenine and adenosine salvage III	4	4	2
siroheme biosynthesis	4	4	2
guanine and guanosine salvage I	2	2	1
superoxide radicals degradation	2	2	1
xanthine and xanthosine salvage	2	2	1
adenine and adenosine salvage I	2	2	1
superpathway of purine deoxyribonucleosides degradation	7	7	3
adenine and adenosine salvage V	3	3	1
pentose phosphate pathway (oxidative branch) I	3	3	1
superpathway of guanine and guanosine salvage	3	3	1
pyrimidine deoxyribonucleosides degradation	3	3	1
factor 430 biosynthesis	7	3	2
purine nucleotides degradation II (aerobic)	11	11	3
pentose phosphate pathway	8	8	2
inosine 5'-phosphate degradation	4	4	1
guanosine nucleotides degradation III	4	4	1
reactive oxygen species degradation	4	4	1
pentose phosphate pathway (non-oxidative branch) I	5	5	1
adenosine nucleotides degradation II	5	5	1
nucleoside and nucleotide degradation (archaea)	10	4	2
superpathway of pyrimidine deoxyribonucleosides degradation	6	6	1
nucleoside and nucleotide degradation (halobacteria)	6	3	1
fluoroacetate and fluorothreonine biosynthesis	6	1	1
cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation)	13	2	2
superpathway of purine nucleotide salvage	14	13	2
ethene biosynthesis III (microbes)	7	6	1
ureide biosynthesis	7	5	1
cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion)	15	3	2
superpathway of glucose and xylose degradation	17	17	2
formaldehyde assimilation II (assimilatory RuMP Cycle)	9	7	1
NiFe(CO)(CN)2 cofactor biosynthesis	10	9	1
Rubisco shunt	10	9	1
formaldehyde assimilation III (dihydroxyacetone cycle)	12	10	1
Bifidobacterium shunt	15	13	1
salinosporamide A biosynthesis	15	3	1
adenosylcobalamin biosynthesis II (aerobic)	33	17	2
arsenic detoxification (mammals)	17	8	1
adenosylcobalamin biosynthesis I (anaerobic)	36	16	2