Experiment set8IT060 for Pseudomonas putida KT2440

Compare to:

24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

200 most important genes:

  gene name fitness t score description  
PP_4890 -4.7 -3.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_2433 -4.6 -3.2 conserved protein of unknown function compare
PP_0787 -4.5 -3.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3511 -4.4 -5.2 Branched-chain-amino-acid aminotransferase compare
PP_5104 -4.3 -3.0 thiazole synthase compare
PP_0422 -4.2 -2.9 Indole-3-glycerol phosphate synthase compare
PP_0290 -4.2 -4.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4678 -4.1 -4.9 Ketol-acid reductoisomerase compare
PP_1988 -4.1 -4.8 3-isopropylmalate dehydrogenase compare
PP_0293 -4.0 -2.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0967 -3.9 -2.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4680 -3.9 -3.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4723 -3.8 -2.6 Carbamoyl-phosphate synthase large chain compare
PP_5155 -3.8 -2.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0292 -3.8 -2.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3052 -3.7 -1.9 conserved protein of unknown function compare
PP_0966 -3.6 -4.3 Histidinol dehydrogenase compare
PP_0965 -3.6 -5.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1079 -3.6 -2.5 Ornithine carbamoyltransferase compare
PP_2348 -3.6 -4.2 Sensor histidine kinase compare
PP_4208 -3.6 -4.2 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_4724 -3.5 -2.4 Carbamoyl-phosphate synthase small chain compare
PP_4994 -3.5 -2.4 conserved protein of unknown function compare
PP_0417 -3.5 -7.4 Anthranilate synthase component 1 compare
PP_2168 -3.3 -3.2 Transaldolase compare
PP_5128 -3.3 -7.3 Dihydroxy-acid dehydratase compare
PP_4217 -3.2 -15.2 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_0421 -3.2 -4.4 Anthranilate phosphoribosyltransferase compare
PP_0261 -3.2 -3.8 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_5289 -3.2 -2.2 Acetylglutamate kinase compare
PP_5097 -3.1 -7.8 homoserine O-acetyltransferase compare
PP_1995 -3.1 -2.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4679 -3.0 -2.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0735 -2.9 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_1110 -2.9 -2.9 serine acetyltransferase compare
PP_1088 -2.9 -2.0 Argininosuccinate synthase compare
PP_1231 -2.9 -2.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1985 -2.8 -2.8 3-isopropylmalate dehydratase large subunit compare
PP_0289 -2.8 -3.9 Imidazoleglycerol-phosphate dehydratase compare
PP_1898 -2.8 -1.9 MotA/TolQ/ExbB proton channel family protein compare
PP_4909 -2.8 -1.9 phosphoserine phosphatase compare
PP_1233 -2.7 -2.6 sulfurtransferase compare
PP_5098 -2.7 -4.5 methionine biosynthesis protein MetW compare
PP_0362 -2.7 -9.1 Biotin synthase compare
PP_2001 -2.7 -6.2 O-succinylhomoserine sulfhydrylase compare
PP_5185 -2.7 -1.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2371 -2.6 -2.6 Sulphite reductase hemoprotein, beta subunit compare
PP_1109 -2.6 -9.3 Transcriptional regulator, GntR family compare
PP_4060 -2.6 -9.4 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_4058 -2.6 -1.8 1,4-alpha-glucan branching enzyme compare
PP_0691 -2.5 -1.8 Glutamate 5-kinase compare
PP_0246 -2.5 -1.7 two-component system DNA-binding response transcriptional dual regulator compare
PP_0127 -2.5 -3.0 Thiol:disulfide interchange protein compare
PP_5347 -2.5 -7.8 pyruvate carboxylase subunit A compare
PP_1111 -2.5 -3.8 putative Synthetase compare
PP_0420 -2.4 -7.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1986 -2.4 -1.7 3-isopropylmalate dehydratase small subunit compare
PP_4262 -2.4 -1.6 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4785 -2.4 -6.1 conserved exported protein of unknown function compare
PP_4782 -2.4 -1.6 Phosphomethylpyrimidine kinase compare
PP_1083 -2.3 -4.3 (2Fe-2S)-binding protein compare
PP_4555 -2.3 -2.7 conserved protein of unknown function compare
PP_5533 -2.3 -1.7 conserved protein of unknown function compare
PP_5015 -2.2 -1.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5346 -2.2 -6.4 pyruvate carboxylase subunit B compare
PP_0593 -2.1 -1.1 putative ribosome-binding factor compare
PP_1779 -2.1 -2.1 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_0913 -2.1 -3.7 conserved exported protein of unknown function compare
PP_1034 -2.0 -5.2 multicopper oxidase compare
PP_2327 -2.0 -3.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1025 -2.0 -6.7 2-isopropylmalate synthase compare
PP_2878 -2.0 -1.9 conserved protein of unknown function compare
PP_4247 -1.9 -1.2 Exonuclease compare
PP_1142 -1.9 -1.0 conserved protein of unknown function compare
PP_3519 -1.9 -1.0 putative Lipoprotein compare
PP_0351 -1.8 -4.4 putative Transmembrane sensor protein compare
PP_0184 -1.8 -1.3 Argininosuccinate lyase compare
PP_0377 -1.8 -1.8 coenzyme PQQ synthesis protein D compare
PP_5017 -1.8 -0.9 Sec-independent protein translocase protein TatB compare
PP_2759 -1.8 -2.4 ribose ABC transporter - ATP-binding subunit compare
PP_1683 -1.7 -1.7 Transcriptional regulator, MarR family compare
PP_5014 -1.7 -1.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_1568 -1.7 -1.2 conserved protein of unknown function compare
PP_3804 -1.7 -4.0 conserved exported protein of unknown function compare
PP_5139 -1.7 -2.6 cadmium translocating P-type ATPase compare
PP_4008 -1.7 -1.2 ATP-dependent serine protease compare
PP_2976 -1.7 -1.2 putative transposase compare
PP_4669 -1.7 -1.6 OmpA family protein compare
PP_2580 -1.7 -2.3 conserved protein of unknown function compare
PP_5328 -1.7 -1.8 putative phosphate transport system permease protein compare
PP_1198 -1.7 -1.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4069 -1.6 -2.5 conserved protein of unknown function compare
PP_4997 -1.6 -1.2 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_1716 -1.6 -2.0 Transcriptional regulator, Cro/CI family compare
PP_0673 -1.6 -1.9 conserved protein of unknown function compare
PP_4792 -1.6 -2.2 conserved exported protein of unknown function compare
PP_1082 -1.6 -3.0 bacterioferritin compare
PP_2345 -1.6 -2.6 conserved exported protein of unknown function compare
PP_0111 -1.6 -2.8 Electron transport protein SCO1/SenC compare
PP_0910 -1.6 -3.0 conserved exported protein of unknown function compare
PP_2370 -1.6 -1.8 conserved protein of unknown function compare
PP_5327 -1.5 -4.2 putative phosphate ABC transporter, permease subunit compare
PP_4707 -1.5 -2.2 OsmY-related protein compare
PP_1176 -1.5 -1.0 conserved protein of unknown function compare
PP_3318 -1.5 -1.7 conserved protein of unknown function compare
PP_3833 -1.5 -2.8 Response regulator compare
PP_3453 -1.5 -6.1 putative Sensor protein RstB compare
PP_0048 -1.5 -1.3 conserved protein of unknown function compare
PP_0809 -1.5 -4.6 disulfide bond formation protein B compare
PP_4009 -1.4 -3.2 ATP-dependent Clp protease adapter protein ClpS compare
PP_4923 -1.4 -5.8 Outer membrane efflux protein compare
PP_2322 -1.4 -5.5 Major outer membrane lipoprotein compare
PP_4701 -1.4 -1.0 glucose-6-phosphate isomerase compare
PP_5486 -1.4 -1.7 conserved protein of unknown function compare
PP_3840 -1.4 -1.3 conserved protein of unknown function compare
PP_2253 -1.4 -1.9 Transcriptional regulator, GntR family compare
PP_1239 -1.4 -2.3 Metallo-beta-lactamase family protein compare
PP_3971 -1.4 -1.0 conserved protein of unknown function compare
PP_5051 -1.4 -1.0 conserved protein of unknown function compare
PP_4214 -1.4 -1.6 pyoverdine biosynthesis related protein compare
PP_3332 -1.3 -2.4 putative cytochrome c-type protein compare
PP_2858 -1.3 -2.1 conserved exported protein of unknown function compare
PP_5090 -1.3 -1.3 putative cell division protein compare
PP_3037 -1.3 -2.2 C4-type zinc finger protein, DksA/TraR family compare
PP_5348 -1.3 -3.9 Transcriptional regulator, LysR family compare
PP_2747 -1.3 -1.3 conserved protein of unknown function compare
PP_4267 -1.3 -2.6 Recombination protein RecR compare
PP_0846 -1.3 -0.9 DnaK-like molecular chaperone specific for IscU compare
PP_4837 -1.3 -1.8 conserved protein of unknown function compare
PP_1208 -1.3 -1.2 conserved protein of unknown function, SlyX family compare
PP_5083 -1.3 -2.4 putative Type IV pili biogenesis protein PilM compare
PP_0908 -1.3 -3.2 conserved exported protein of unknown function compare
PP_0978 -1.3 -2.3 conserved protein of unknown function compare
PP_3926 -1.3 -1.5 short-chain dehydrogenase compare
PP_3365 -1.3 -1.1 Acetolactate synthase compare
PP_0040 -1.3 -1.5 hypothetical protein compare
PP_5248 -1.2 -0.8 putative hydrolase compare
PP_1713 -1.2 -2.0 Transcriptional regulator PcaQ compare
PP_3447 -1.2 -1.1 conserved membrane protein of unknown function compare
PP_2328 -1.2 -2.3 Phosphoadenosine phosphosulfate reductase compare
PP_4379 -1.2 -3.4 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5313 -1.2 -1.4 DNA-binding protein HU-alpha compare
PP_4505 -1.2 -3.0 Sensor histidine kinase compare
PP_5110 -1.2 -1.3 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_0435 -1.2 -7.9 Peptidase, M23/M37 family compare
PP_5331 -1.2 -3.1 Long-chain acyl-CoA thioester hydrolase compare
PP_3506 -1.2 -2.0 Magnesium chelatase, subunit ChII compare
PP_0508 -1.2 -1.8 conserved exported protein of unknown function compare
PP_5267 -1.2 -1.6 putative cytochrome c5 compare
PP_5425 -1.1 -3.2 conserved protein of unknown function compare
PP_3258 -1.1 -1.6 conserved protein of unknown function compare
PP_1493 -1.1 -2.4 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1319 -1.1 -2.1 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_0153 -1.1 -1.3 hypothetical protein compare
PP_0512 -1.1 -1.7 hypothetical protein compare
PP_4471 -1.1 -1.5 Magnesium transporter compare
PP_4261 -1.1 -2.0 cation-transporting P-type ATPase compare
PP_5628 -1.1 -1.5 conserved protein of unknown function compare
PP_0083 -1.1 -0.8 tryptophan synthase beta chain compare
PP_5575 -1.1 -1.6 conserved protein of unknown function compare
PP_0082 -1.1 -0.7 tryptophan synthase alpha chain compare
PP_1099 -1.1 -1.5 Cold shock protein CapB compare
PP_5022 -1.1 -1.4 Glutamine transport ATP-binding protein GlnQ compare
PP_3798 -1.1 -2.6 conserved protein of unknown function compare
PP_4922 -1.1 -4.5 Phosphomethylpyrimidine synthase compare
PP_2809 -1.1 -2.3 conserved membrane protein of unknown function compare
PP_0909 -1.1 -2.9 conserved exported protein of unknown function compare
PP_2794 -1.1 -1.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_1802 -1.1 -7.2 glycosyl transferase compare
PP_3726 -1.1 -1.2 Enoyl-CoA hydratase/isomerase family protein compare
PP_1778 -1.1 -0.7 Lipopolysaccharide ABC export system, permease protein compare
PP_5582 -1.1 -1.3 conserved protein of unknown function compare
PP_2441 -1.1 -1.4 conserved protein of unknown function compare
PP_2555 -1.1 -2.7 conserved protein of unknown function compare
PP_4263 -1.0 -1.7 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_0406 -1.0 -2.3 Nucleotidyltransferase family protein compare
PP_4223 -1.0 -1.0 diaminobutyrate-2-oxoglutarate transaminase compare
PP_4937 -1.0 -1.0 toluene tolerance protein compare
PP_5055 -1.0 -1.0 Sulfurtransferase compare
PP_3801 -1.0 -4.7 putative Cation ABC transporter, periplasmic cation-binding protein compare
PP_t29 -1.0 -0.7 tRNA-Ala compare
PP_2326 -1.0 -3.8 Universal stress protein compare
PP_4836 -1.0 -1.5 conserved exported protein of unknown function compare
PP_2429 -1.0 -1.0 putative Membrane protein compare
PP_2582 -1.0 -2.2 putative Heme oxygenase compare
PP_3637 -1.0 -1.3 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_2720 -1.0 -1.0 conserved protein of unknown function compare
PP_4015 -1.0 -2.4 HflD-like high frequency lysogenization protein compare
PP_3662 -1.0 -3.8 conserved protein of unknown function compare
PP_1827 -1.0 -3.4 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
PP_2107 -1.0 -1.1 conserved protein of unknown function compare
PP_4835 -1.0 -1.6 conserved exported protein of unknown function compare
PP_2714 -1.0 -2.5 Sensor histidine kinase compare
PP_4070 -1.0 -3.2 conserved protein of unknown function compare
PP_5008 -1.0 -1.2 Poly granule-associated protein compare
PP_1834 -1.0 -1.5 conserved protein of unknown function compare
PP_2999 -1.0 -1.1 Glyoxalase family protein compare
PP_5475 -1.0 -1.3 conserved protein of unknown function compare
PP_2414 -1.0 -1.5 conserved exported protein of unknown function compare
PP_0361 -1.0 -2.0 putative Competence protein ComF compare


Specific Phenotypes

For 4 genes in this experiment